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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020098 ID=TCONS_00020098|Name=TCONS_00020098|organism=Clytia hemisphaerica|type=transcript|length=3238bpRun BLAST on NCBI transcript from alignment at sc0000349:55368..67176+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020098 ID=TCONS_00020098|Name=TCONS_00020098|organism=Clytia hemisphaerica|type=transcript|length=11809bp|location=Sequence derived from alignment at sc0000349:55368..67176+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00020098 vs. Swiss-Prot (Human)
Match: MD12L (Mediator of RNA polymerase II transcription subunit 12-like protein OS=Homo sapiens GN=MED12L PE=1 SV=2) HSP 1 Score: 257.684 bits (657), Expect = 5.238e-70 Identity = 217/807 (26.89%), Postives = 377/807 (46.72%), Query Frame = 1
Query: 4 RFEKRFASFSLKIESGILSSHKPSNTNLLWEQQFLKEHFEKPGNFPLEFIWESKLTNERPAEIYSFVCNALLAVC-KTTNQQRLYALSSFCCEVASHFSNMCTEFLGIINAFCSSLTTSGLGYEQTTQSVNLKEKSTVQALAFFTSVLVARQIIKLNDLLSEVLYPALKVTS---KKSTKGLQLVCRILEQIFVLNPFPAPKL-----KLGQTHPFALDVFDAGLLRGEMNKANLSSVLSVLKRLYLQAE-----------------------KGKSDN--------KSPSNSIS-------DVIKRSLQLIINQSWLQDKVLSN-ENKNTIMKAVLDSELKSHQSRHFISLILNQETKSSPAVNVSNIQ-QITNRICMTLDKWSLHNASLELQLLLKMASKE-------EHQSILTAIGRSILSTLTETSDVGH-----------------------------------RRS--LVGPLISKLSISIQGRILKSASETLEKGKWWIPGGNNKLSAD----------SQSILFALISSCLQNQEENKNMFLGSLQKQLQALVTAQKEDKI--DLFSSQFSGLVDAVRLRLNLVGMLFDNLLKSPSVLGDWAITLFSLLLSGIIPYTENTVLFTNVTDMVVILLQKIHMNEIXXXXXXXXXXXXXXXPLPNNEILRFNLVVRKMRKELSQRPSTEIGTLCEELLPLLTGPCEIICSEPTYSLETLQNINKEKPNKPESSNQPEQIRKRTHVQSINAWDLLEDSKNSGPLNLAMFGAVRVEKRPLRYVEESLRLIHHSHQKRKPLSYFL 2109
+F F+S K++ I ++ P+N+NL W+ F+ + E P + + K+ ++ A YSFVCN L+ VC + R+ +++F E+ + + + +E+LG++ A C S + G+ +V++ + S +LA F ++L+ARQ L D++ V P+L + + G ++ CR+L L+ F AP+ G+ P D LL N + +V +VLK + + + G +D+ KS SIS + + L+ I Q W+ + L E T + +LD L + Q++ + LI N+Q Q RI L++W+L + LELQL++K K+ E ++L I ++ + +++D+ + RR LV PLI++L S+QGR+LK+A E LEKG+ G ++K D SQ +L+ +CL+ Q+E + L SLQ Q+ +++ +E++ D+ + Q + +A++LRLNLVG +FD + +S DWA+ L ++ SG + N LFT V DM+ +L+ ++++ S + N+ NLV +K++KEL + S I + +LLPL C++I EP + +L + K +S ++ + ++ T Q ++ WDL E KN PL+ A FG VRV++R ++Y E+ L++H+H KP SY+L
Sbjct: 945 KFGDLFSSACSKVKQTIYNNVMPANSNLRWDPDFMMDFIENPSARSINYSMLGKILSDNAANRYSFVCNTLMNVCMGHQDAGRINDIANFSSELTACCTVLSSEWLGVLKALCCS-SNHVWGFNDVLCTVDVSDLSFHDSLATFIAILIARQCFSLEDVVQHVALPSLLAAACGDADAEPGARMTCRLL-----LHLFRAPQACFLPQATGKPFPGIRSSCDRHLLAAAHNSIEVGAVFAVLKAIMMLGDAKIGNNSVSSLKNDDFTMRGLRCDGNADDIWTASQNPKSCGKSISIETANLREYARYVLRTICQQEWVGEHCLKEPERLCTDKELILDPVLSNMQAQKLLQLICYPHGIKE-CTEGDNLQRQHIKRILQNLEQWTLRQSWLELQLMIKQCLKDPGSGSVAEMNNLLDNIAKATIEVFQQSADLNNSSNSGMSLFNPNSIGSADTSSTRQNGIKTFLSSSERRGVWLVAPLIARLPTSVQGRVLKAAGEELEKGQHL--GSSSKKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLTSLQNQVNQILSNWREERYQDDIKARQM--MHEALQLRLNLVGGMFDTVQRSTQWTTDWALLLLQIITSGTVDMHTNNELFTTVLDMLGVLINGTLASDLSNASPGGSE---------ENKRAYMNLV-KKLKKELGDKRSESIDKV-RQLLPLPKQTCDVITCEP---MGSLIDTKGNKIAGFDSIDKKQGLQVSTK-QKVSPWDLFEGQKNPAPLSWAWFGTVRVDRRVIKYEEQHHLLLYHTHPMPKPRSYYL 1725 The following BLAST results are available for this feature:
BLAST of TCONS_00020098 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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