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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020095 ID=TCONS_00020095|Name=TCONS_00020095|organism=Clytia hemisphaerica|type=transcript|length=698bp
GATACACTTTGATCAGCGCTCTGGATGATGATATCATACAAAGTGATAGT
ACTGTCGTAAGCTGGGGCGAGGAGTCACAAGAGATGGCGTTACTTCTGAT
CATCTTGAGTTTAATTTTCATGAACGATGGCCCACTTACCGAAGcatCGT
TATGGTTCACCCTGAAGAAGATTGGTGTATACAAAGAAAGAAAACATCGT
GTGTTTGGAGATGTCAATAAGTTGGTCAATAATGATTTCATCAAGGTCTt
TTATTTGACGAGACACAAAGAGATAAGTGCTGATGGACCATCGTTCACTT
ATTCGATAGGTCCTCGTGCCGCAAAAGAAATCAGTAAACGAAAAATCCTG
ACTTTTGTTTCACAGgtGTACGGATATGACGACATCAAGAAATGGAAAAA
CCAATACGAAATcgttgaagaagaagaaacgcATGCTAACCAATCACAAA
TGGATGTGGATAGTGATTAACCAATCAAATGAAAGTATTTGGTGACCTTT
GTCACGAAGCCACACGATCGATTCATCCCTTGAAAGGTCTCTTGTTATTG
AACACTAGTTATTTGGTGAATACACTAGAAGGTGAATTTCGTTTTGATAT
TCATTCGACgaagatatttcaaaattgatattGATTCACACCCTATAAAC
TTCAGAAGGAGAGAGTCACGAAGTTGTTAAATGAAACATTCGATTCTT Run BLAST on NCBI transcript from alignment at sc0000349:14253..20657+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020095 ID=TCONS_00020095|Name=TCONS_00020095|organism=Clytia hemisphaerica|type=transcript|length=6405bp|location=Sequence derived from alignment at sc0000349:14253..20657+ (Clytia hemisphaerica)
GATACACTTTGATCAGCGCTCTGGATGATGATATCATACAAAGTGATAGT
ACTGTCGTAAGCTGGTAAGTGATCAGCCTTTTGATAACTCTAAGGATACA
CTTTGATCAGCGCTCTGGATGATGATATCATACAAAGTGATAGTAATGTC
GTAAGCTGGTAGGTGATCAGCCTTTTGATAACTCTAAGGATACACTTTGA
TCAGCGCTTTGGATGATGATATCATACAAAGTGATAGTACTGTCGTAAGC
TGGTAGGCATTTAGCCTTTTGATAGCTCTACTAAAACGTTTTCAGGCCAA
AGGTCCTTGTACCAAAATAACTTACCGTTCATTTGTAATTCAAAAGGGGA
TTGAGACTTACTTCGAATAACCGGAGTTTGATTACCTATTTTTTCTGCTG
AAAGTTAAACTAAACCCTCTTTTGGGTTTAGGTTTTGATGTTCACCAAAA
GAATTAGATTATGTGGTTTAAATTGAACGTCATAAACACAAAGTTTTGCA
TAACCCATTTAAAGGAAAGGTATTTTCCAAATAAGGGAATGGTACTACTC
CACCACGAAACATTTTGTTTTCAGTCGATGATTTGCCGTAAAGCATAGCT
TCGAATAGCTTAGTGTGATTACGCCCATATACGGCTCCTCAGGGATTACG
AATCGCTTCGAATACTCGAAATTTTAAATTAAGGTTCGATAACTGAGTGA
GTCATAAAATCAAATCTAAGGGGAAAGCCATTAACTTCAAATAGTTGAAA
ATTTCGAATAAGAGGGGACTCCAATAGCCGGGAGCCTACGATGCTCTCTA
CAAACCAAAATTAGATGAAATTTTATGTATGAGCATTAGTGTGTTGCCAA
AGTGttacccactgacctttatataccctggacaaagcttctcaatccca
gccaagcaaaatctttgatcggagttttttgaaaattggtaccctaatgt
cggcactNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNgtaccaattctaaaaaaactccaatcaaagat
ggcagatatagcttggtccagggttatataaaagTCAGTGGTGTTACCGC
ttgttataaaataaaaagaatggtACTACTTTGTGTAATCaatttgtttc
cttttttcttccagGGGCGAGGAGTCACAAGAGATGGCGTTACTTCTGAT
CATCTTGAGTTTAATTTTCATGAACGATGGCCCACTTACCGAAGGTTGGT
GTGTGCTTTGGTtctaaattaaaatatttgccaaaaaatatcaaataaaa
aagaagcatttacTCTATGCGGATTCTTAAAAGAGGTCTCGACAAGTTTG
TGTGCCCCTTTCGTACGTGATCGCgtaatcataattttttttttggcgtg
atagTGTGGTAAAGATTTTGGTGTCATGTGAAATGGTGGTATGTATTCTA
GTGAGCATGCTACCCTGTGCGTTTTCTACTTTATTGTATGAAAATTTCGT
GGTATgaaaattttgcggtttttcggcCTCGATCGCGAAACTGCGAAATT
TTCATGCCGCAAAATTTTCATGCTATaaagtagtctgaatcgcagacctc
tatagacaTACTTCCTATatataagaaactcttttcgctagaggatgagc
agaagcctatgcGTTTTCTTTCTTCGATGTTCCCGTATAAAATATCACGT
AGtcatatttttttctccagcatCGTTATGGTTCACCCTGAAGAAGATTG
GTGTATACAAAGAAAGGTACGTTGGTTAAAACAACTACGTATATTTAACG
ACGTATATTTAATGGGCTTGATTTTGCTTTAAGAAACAATTTTATTGCTT
TGGGATAATGATTGATTATCATACCTCGACGAAAAGTTAGTTCCCTTTTA
AGTACTTGAGACCTAATTCGAAGTGAGAGACGGCAAAAAGTCAATGGAAA
GTGGTAGttcaaatctttgcttgaaaaagattgaacgaagtcattgcatt
gacgtcaaaagaaggcatcgcattgactttagacagtcGACTTTCTGCCG
ACTTTCGTCAAAACTAGAGAAGGCAAGGCAGAAAGTCGACCGTCTAAACT
CGTGCTGATTGGAAGGTGGTCAAAAGAGTGAATTTGTTTTTCAGAAAACA
TCGTGTGTTTGGAGATGTCAATAAGTTGGTCAATAATGATTTCATCAAGG
TCTtgtaagtttgaaaatttattgaatatttaaagTCACTCCTGTTTCTG
CTTGTATGATGATGATTCCGTGAGTTTATTTTTGGACTTACCCCGGTCGA
GGTCCTATAATAAATtcctttgttcgttcgttcatttgttcgtctgttac
aagcttttctcaagattggctcattagtttttctgattttttgcacagtg
atgcgtattagcaatgccaaAAATATGACCGAGTCAAATCTTCAAGGAAA
Agttttttccggtcgaaaatgccggaaatatgccgggaatccccgttttt
gcaaattttcattggattttttccttatatttctttgtttttttcacaca
aaaacattattgataacaatgcccaccatcaagcgtGATTCAtatgtcaa
taaaactgatttttgcgaccagaactttctatttatttttttctctactc
cccttccctctccccctatcaacaatcaatggtgaaatttaatttgttat
gcattttcgctaaacgctttATTTAAAactgattgtttttatttttctcc
ttattgctatctagctttcatcatcaggttgGTCCATttagcatctagct
tgttttacTTCGCTCTATACTGGACCTCTGTCCacttctttttgaatgaa
atacaCACTTCTGAATAAgtttacacacttttttataggAAGAATAATTT
ACTTAAGTTACTTTTTTTAGCTTAATGAATTTACACAATTTTAATAAGAC
ACAATACACAATAAGAAGATACACAATACACAATAAGAAGAAGAATTTTA
TTAGGACATGAAGTTTTTTAAAGcccaaaaacaaatcaaaaatgaaagaa
cAATCTCAGTCTCAGCAATTAAAAAGCTGATTTTAATCTccttttttaag
ccaaaatttCAGTTTAGCAAGCATATTAAGAGAATCTTAAGAttctcttt
attttcattagtgATTGACCAACCAACTTTTGAGCAGTGAGGAATTAAAC
AGAGATCTTGCAAGAATAAATGAGTGGGCtcgtcaatggaagatgtcttt
taatCCTGATCCCACAAAACAAGCTGTGGAAGTTTACTTTTCCAAAAAGC
TCTTACCAGCTAATGCTCCTGTTTTATCTTTCAATAATACTGACATAAGA
ACTAGTGAATGTCATCAGAAGCATCTAGGTCTTATCTTGGATTCCAAACT
CTCATTCAGTCACCATTtagaggaaaaaataaaaaaggccaaCAAAGGTA
TTGGCCTCATTAACAGACTTCGCAAACATGTACCAAGAAAATCTCTGCTT
ACTTTATACAAATCTTACATTAGACCACANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNt
gctttcgtggaacgtctcaagaaaaactttattctgaACTTGGTCTCGAG
AGTCTTGCTGATCGTCGATTTAGTAGGAGAATGATCTTCTTCTACAAAAT
CTTAAACAATTTAGCCCCCTCTTGTTTACGTAACTATTTACCAGCAAGAC
TTGCGGCACTGGGTAAtctaagaacaagaaatcctatttatcaacttaat
attcgaactgagcgtttccggaATTCTTTTTACCCATACTGCATAACACA
GTGGAATATTCTAGCTGGTCGTATAAGAGATATGCCTTCAGTATCtacct
tcaaaaaagcaatcctcGAGTTTCTAAGGCCCAAACCTTCTCCTGTTTTT
GGAGCTCGTGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTGCGGGGGGAtg
agctatttattttttctgtgtttgtttttgtaagtagtatatgttcgtaa
gtgtaatgtagcttctcaaatcatataaaaaaaataaaaaaaataaaaaa
tcttaagaacataCCAGTTAAAAATCCAGTAGAATCACGAAGAATAGCCT
CGGTCAAAATTTCCTGGTTCTCGTTAAGAAAGCGTGTATTTCTCTCATAC
TGATTCAGATTGAGaagattaaatttgattttgaaaattcaactttGTAT
TTTTTCAGTTATTTGACGAGACACAAAGAGATAAGTGCTGATGGACCATC
GTTCACTTATTCGATAGGTCCTCGTGCCGCAAAAGAAATCAGTAAACGAA
AAATCCTGACTTTTGTTTCACAGGTATCATTCATTCTATTCATCTCTTGA
GAATATGGGTctaataccgggtgacccacgcgAAACTCGGAACAGGTTTT
GATGTCCCCAGACCGAATAAAATATCCTAGAGTGCTTTAAGTTTGGTTAT
ctatactttttaatttttaattaaattttatcatttttgttgCAACCGGC
GGGGTGTTCAAGGTGTTTTTTCAAAGAGTAAATATCGAAGCCGAGAACGG
TTATTATGCCGGCTCTTCCAAAACTGGAGTTACTAAGATATTACTTCGAT
CTAAAGGCTTTAAAAACTGTCTATCTGTCTTTCGTCGAGAAGGGTGATTA
TGCCGGCTCTTCCAAAAGAGATTTATTCACTTTAtccgatttttttctgc
tggAAGCTCGACAATCATAAACAAATTTCGAAAGTCTGAAACCAATTTCG
ACACGTTTTGGAAGACCTCACATAGTGACCGTTCCCGGCTTTCATAGAAT
GCGGTAACGGTAGGGATTAGGCCAATAAACACCTACGGAACAAACACGCA
GCTTTAAATAAAAGGTGTTAGTGGTACATACCAGCGGTTCCCGGATCAAA
CCCccactccttccaatgttccgttcagttcacagatagccgagccggct
ggccgtgggacctgtgaaaacaatcgaacGACTTTTAAAAGTCCTAGACT
ACTGGGCTGtccacgtaaaatatcaaaatatcaacTTAAACTAAAAAAAA
GAAGCCTTTTCAGAGCCCAAAAAcctgggctccaaacattcgaaaaagct
gcaaagtggaatagagattactgcgaaaaaaaaaacaaacgcaacgtcta
gtataggctactgAAAACTGCGAAAGTGACTTCCTTTAATGCGTTTAAAG
TtgtgttctttattttcaaaaggtGTACGGATATGACGACATCAAGAAAT
GGAAAAACCAATACGAAATcgttgaagaagaagaaacgcATGCTAACCAA
TCACAAATGGATGTGGATAGTGATTAACCAATCAAATGAAAGTATTTGGT
GACCTTTGTCACGAAGCCACACGATCGATTCATCCCTTGAAAGGTCTCTT
GTTATTGAACACTAGTTATTTGGTGAATACACTAGAAGGTGAATTTCGTT
TTGATATTCATTCGACgaagatatttcaaaattgatattGATTCACACCC
TATAAACTTCAGAAGGAGAGAGTCACGAAGTTGTTAAATGAAACATTCGA
TTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020095-exon-sc0000349-1491911889:14253..14316 | TCONS_00020095-exon-sc0000349-1491911889:14253..14316 | Clytia hemisphaerica | exon |
| TCONS_00020095-exon-sc0000349-1510915933:14253..14316 | TCONS_00020095-exon-sc0000349-1510915933:14253..14316 | Clytia hemisphaerica | exon |
| TCONS_00020095-exon-sc0000349-1575043694:14253..14316 | TCONS_00020095-exon-sc0000349-1575043694:14253..14316 | Clytia hemisphaerica | exon |
| TCONS_00020095-exon-sc0000349-1491911889:15617..15696 | TCONS_00020095-exon-sc0000349-1491911889:15617..15696 | Clytia hemisphaerica | exon |
| TCONS_00020095-exon-sc0000349-1510915933:15617..15696 | TCONS_00020095-exon-sc0000349-1510915933:15617..15696 | Clytia hemisphaerica | exon |
| TCONS_00020095-exon-sc0000349-1575043694:15617..15696 | TCONS_00020095-exon-sc0000349-1575043694:15617..15696 | Clytia hemisphaerica | exon |
| TCONS_00020095-exon-sc0000349-1491911889:16173..16218 | TCONS_00020095-exon-sc0000349-1491911889:16173..16218 | Clytia hemisphaerica | exon |
| TCONS_00020095-exon-sc0000349-1510915933:16173..16218 | TCONS_00020095-exon-sc0000349-1510915933:16173..16218 | Clytia hemisphaerica | exon |
| TCONS_00020095-exon-sc0000349-1575043694:16173..16218 | TCONS_00020095-exon-sc0000349-1575043694:16173..16218 | Clytia hemisphaerica | exon |
| TCONS_00020095-exon-sc0000349-1491911889:16597..16656 | TCONS_00020095-exon-sc0000349-1491911889:16597..16656 | Clytia hemisphaerica | exon |
| TCONS_00020095-exon-sc0000349-1510915933:16597..16656 | TCONS_00020095-exon-sc0000349-1510915933:16597..16656 | Clytia hemisphaerica | exon |
| TCONS_00020095-exon-sc0000349-1575043694:16597..16656 | TCONS_00020095-exon-sc0000349-1575043694:16597..16656 | Clytia hemisphaerica | exon |
| TCONS_00020095-exon-sc0000349-1491911889:19311..19425 | TCONS_00020095-exon-sc0000349-1491911889:19311..19425 | Clytia hemisphaerica | exon |
| TCONS_00020095-exon-sc0000349-1510915933:19311..19425 | TCONS_00020095-exon-sc0000349-1510915933:19311..19425 | Clytia hemisphaerica | exon |
| TCONS_00020095-exon-sc0000349-1575043694:19311..19425 | TCONS_00020095-exon-sc0000349-1575043694:19311..19425 | Clytia hemisphaerica | exon |
| TCONS_00020095-exon-sc0000349-1491911889:20325..20657 | TCONS_00020095-exon-sc0000349-1491911889:20325..20657 | Clytia hemisphaerica | exon |
| TCONS_00020095-exon-sc0000349-1510915933:20325..20657 | TCONS_00020095-exon-sc0000349-1510915933:20325..20657 | Clytia hemisphaerica | exon |
| TCONS_00020095-exon-sc0000349-1575043694:20325..20657 | TCONS_00020095-exon-sc0000349-1575043694:20325..20657 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000349 | supercontig | sc0000349:14253..20657 + |
Blast
BLAST of TCONS_00020095 vs. Swiss-Prot (Human)
Match: NSE3 (Non-structural maintenance of chromosomes element 3 homolog OS=Homo sapiens GN=NSMCE3 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 2.462e-20 Identity = 51/147 (34.69%), Postives = 79/147 (53.74%), Query Frame = 3
Query: 3 YTLISALDDDIIQSDSTVVSWGEESQEMALLLIILSLIFMNDGPLTEASLWFTLKKIGVYKERKHRVFGDVNKLVNNDFIKVFYLTRHKEISADGPSFTYSIGPRAAKEISKRKILTFVSQVYGYDDIKKWKNQY-EIVEEEETHAN 440
Y LI+ L+ ++ D+ + + + LL+I+L LIFM + E W L+++GVY +KH +FGD KL+ DF++ YL + D + + GPR E SK K+L FV++V+ D K W QY E + +EE A
Sbjct: 152 YILINTLEP--VEEDAEMRG-DQGTPTTGLLMIVLGLIFMKGNTIKETEAWDFLRRLGVYPTKKHLIFGDPKKLITEDFVRQRYLEYRRIPHTDPVDYEFQWGPRTNLETSKMKVLKFVAKVHN-QDPKDWPAQYCEALADEENRAR 294
The following BLAST results are available for this feature:
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