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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020093 ID=TCONS_00020093|Name=TCONS_00020093|organism=Clytia hemisphaerica|type=transcript|length=1205bpRun BLAST on NCBI protein sequence of TCONS_00020093-protein >TCONS_00020093-protein ID=TCONS_00020093-protein|Name=TCONS_00020093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=324bp QNGGKVVTIFSKAHASSFHHETFPNPDITFKHSYKAIKIKNHKRYTATMPRun BLAST on NCBI transcript from alignment at sc0000349:3562..20657+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020093 ID=TCONS_00020093|Name=TCONS_00020093|organism=Clytia hemisphaerica|type=transcript|length=17096bp|location=Sequence derived from alignment at sc0000349:3562..20657+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000349:3562..20657+ >TCONS_00020093 ID=TCONS_00020093|Name=TCONS_00020093|organism=Clytia hemisphaerica|type=CDS|length=10725bp|location=Sequence derived from alignment at sc0000349:3562..20657+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00020093 vs. Swiss-Prot (Human)
Match: NSE3 (Non-structural maintenance of chromosomes element 3 homolog OS=Homo sapiens GN=NSMCE3 PE=1 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 3.892e-35 Identity = 80/214 (37.38%), Postives = 122/214 (57.01%), Query Frame = 3
Query: 306 KVSEMVRYLLFADRKKNGIKRADIIKNVLKENPKWFAKVFEEASLKINQVFGLDVVSLETEKKDKSKGYTLISALDDDIIQSDSTVVSWGEESQEMALLLIILSLIFMNDGPLTEASLWFTLKKIGVYKERKHRVFGDVNKLVNNDFIKVFYLTRHKEISADGPSFTYSIGPRAAKEISKRKILTFVSQVYGYDDIKKWKNQY-EIVEEEETHA 944
KVSE+V++LL D+KK IKRADI+K+V+ + F +F+ A+ ++ VFG +V LE KS Y LI+ L+ ++ D+ + + + LL+I+L LIFM + E W L+++GVY +KH +FGD KL+ DF++ YL + D + + GPR E SK K+L FV++V+ D K W QY E + +EE A
Sbjct: 88 KVSELVQFLLIKDQKKIPIKRADILKHVIGDYKDIFPDLFKRAAERLQYVFGYKLVELEP----KSNTYILINTLEP--VEEDAEMRG-DQGTPTTGLLMIVLGLIFMKGNTIKETEAWDFLRRLGVYPTKKHLIFGDPKKLITEDFVRQRYLEYRRIPHTDPVDYEFQWGPRTNLETSKMKVLKFVAKVHN-QDPKDWPAQYCEALADEENRA 293 The following BLAST results are available for this feature:
BLAST of TCONS_00020093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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