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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020090 ID=TCONS_00020090|Name=TCONS_00020090|organism=Clytia hemisphaerica|type=transcript|length=1647bp
gctagaagcgaatctcctAGATAGGATTTCAAGCCATCGCCTTGAGCGAT
CCGTGTCGTTATTGTACAAAttccggattgaaagtaaagttttccgctag
atttcaaaaaatatactaCTGGGAAACAAAGAAACTGctaaattcaatcc
gtcgtcaaaaatacggcatatattctaaggcttcactttttcttgcctga
gaaaggttaaaggttttcttttagCACTATATTGGGACCTGTGACAGAGC
TTGATTTCATGGGTGGAAGACACCGTACCTTCATCgaactcttttttttt
ggaaacGAAATTGAATCTGGAAGCATATTTTTTACACTTAAATGATAACT
TTCTTTAGAGACGCCTgtcttttgtccttcagaaatcACTTAAACGTGAA
TTCTGAAAAACGCAAGCGTCATATTTCACTATTTACAGTCtgttaaaata
tttctatttctatgaCACCCAACGCTTTGTTTtaatataaatttaaaaaa
tttataaattaatgttacgtttttcaaacttttctatACGTAACCCAGCT
CACAGACACAAATCAGCACATTGACAGCAATATGATTTGAAAACAGTTGT
TTTTGAGATATGTGTAGTCCGTCTGTCTCTCTGCTACATGATCAATAGCC
GATTTCTCATTATATACATTTTTATACACTCCAAATACGCGTCTCTAGAT
TCGTTTAGCGAAATTCAAATTATCACTTGAGATTTCACTTGATagttttt
taccattttcttgATTTACGAGTCGTGAGCTTGATCGTCTTCTTTTTCCC
AATGAAGCACGTTTCTCTTCACTGCTCGAAGATCGCTTCTTtgttttctt
cactttcttttcCTCTTCAACGACTGGCTCTGCAACGTCGGTGCCTTTCT
CTGATGCCCCGTTGGTGTCTGTCTCTTCGGATACGGAGGCTGTTTCCttt
gcttcttcttcttcttccttaggTTCTTCGTCGGGAACAGCTTCTTCACC
GTTAGATTCTTCTACCCCATTTTCTGTTTCTTCAGCTCCGCCATTTTCTT
CTTCCGCCACTTCAGCTTGTACAACTTCTTTTTGCTTCAATTGTTCTTTT
AATGCTTGAGTTGGATCTTCAACTGCTTCAGGTGATTCTACAGGGCTCTC
AATCAACTCAACCATTTTGCAATTATATTCTTCTCGTgttttttcttcta
aaatttcttctttatgAAATCctcatcaaaacattcaaacctCTCAGCTA
AACCTCAGACAACACGACTGCTAGTTCCAAAAAATGCGTCTATCTAACtt
tgtgaatgaaaaaaaatctcaaacagAGTTTTCTCtcaaacatgttttta
tttcgtGTGCGCTGATTATATAACTCTAACAATATTCCAGTATAGAGTCA
CGTGTCTCTCAGACAGTTACAGTTAtcaattggtttgttttgaattttcc
aaTATTCCTTCTCCCctatttttatgaaaagctcTTATACTCTGAGGCTT
TGatcaattttgattgaaaagacTACTTTTAATGATGATTTTTCAAGAAC
CAGTTTAGCTAGTTTCATTCTTGCTGTAATCTCCATTTTTAATTAGACTT
TTTTCTCTTTAAACTTAGTGGGTTTTCAGTCTAGCataatttaaggg Run BLAST on NCBI protein sequence of TCONS_00020090-protein >TCONS_00020090-protein ID=TCONS_00020090-protein|Name=TCONS_00020090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MVELIESPVESPEAVEDPTQALKEQLKQKEVVQAEVAEEENGGAEETENG
VEESNGEEAVPDEEPKEEEEEAKETASVSEETDTNGASEKGTDVAEPVVE
EEKKVKKTKKRSSSSEEKRASLGKRRRSSSRLVNQENGKKLSSEISSDNL
NFAKRI Run BLAST on NCBI transcript from alignment at sc0000348:297069..298715 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020090 ID=TCONS_00020090|Name=TCONS_00020090|organism=Clytia hemisphaerica|type=transcript|length=1647bp|location=Sequence derived from alignment at sc0000348:297069..298715 (Clytia hemisphaerica)
cccttaaattatGCTAGACTGAAAACCCACTAAGTTTAAAGAGAAAAAAG
TCTAATTAAAAATGGAGATTACAGCAAGAATGAAACTAGCTAAACTGGTT
CTTGAAAAATCATCATTAAAAGTAgtcttttcaatcaaaattgatCAAAG
CCTCAGAGTATAAgagcttttcataaaaatagGGGAGAAGGAATAttgga
aaattcaaaacaaaccaattgaTAACTGTAACTGTCTGAGAGACACGTGA
CTCTATACTGGAATATTGTTAGAGTTATATAATCAGCGCACacgaaataa
aaacatgtttgaGAGAAAACTctgtttgagattttttttcattcacaaaG
TTAGATAGACGCATTTTTTGGAACTAGCAGTCGTGTTGTCTGAGGTTTAG
CTGAGaggtttgaatgttttgatgagGATTTcataaagaagaaattttag
aagaaaaaacACGAGAAGAATATAATTGCAAAATGGTTGAGTTGATTGAG
AGCCCTGTAGAATCACCTGAAGCAGTTGAAGATCCAACTCAAGCATTAAA
AGAACAATTGAAGCAAAAAGAAGTTGTACAAGCTGAAGTGGCGGAAGAAG
AAAATGGCGGAGCTGAAGAAACAGAAAATGGGGTAGAAGAATCTAACGGT
GAAGAAGCTGTTCCCGACGAAGAAcctaaggaagaagaagaagaagcaaa
GGAAACAGCCTCCGTATCCGAAGAGACAGACACCAACGGGGCATCAGAGA
AAGGCACCGACGTTGCAGAGCCAGTCGTTGAAGAGgaaaagaaagtgaag
aaaacaAAGAAGCGATCTTCGAGCAGTGAAGAGAAACGTGCTTCATTGGG
AAAAAGAAGACGATCAAGCTCACGACTCGTAAATcaagaaaatggtaaaa
aactATCAAGTGAAATCTCAAGTGATAATTTGAATTTCGCTAAACGAATC
TAGAGACGCGTATTTGGAGTGTATAAAAATGTATATAATGAGAAATCGGC
TATTGATCATGTAGCAGAGAGACAGACGGACTACACATATCTCAAAAACA
ACTGTTTTCAAATCATATTGCTGTCAATGTGCTGATTTGTGTCTGTGAGC
TGGGTTACGTatagaaaagtttgaaaaacgtaacattaatttataaattt
tttaaatttatattaAAACAAAGCGTTGGGTGtcatagaaatagaaatat
tttaacaGACTGTAAATAGTGAAATATGACGCTTGCGTTTTTCAGAATTC
ACGTTTAAGTgatttctgaaggacaaaagacAGGCGTCTCTAAAGAAAGT
TATCATTTAAGTGTAAAAAATATGCTTCCAGATTCAATTTCgtttccaaa
aaaaaagagttcGATGAAGGTACGGTGTCTTCCACCCATGAAATCAAGCT
CTGTCACAGGTCCCAATATAGTGctaaaagaaaacctttaacctttctca
ggcaagaaaaagtgaagccttagaatatatgccgtatttttgacgacgga
ttgaatttagCAGTTTCTTTGTTTCCCAGtagtatattttttgaaatcta
gcggaaaactttactttcaatccggaaTTTGTACAATAACGACACGGATC
GCTCAAGGCGATGGCTTGAAATCCTATCTaggagattcgcttctagc Coding sequence (CDS) from alignment at sc0000348:297069..298715 >TCONS_00020090 ID=TCONS_00020090|Name=TCONS_00020090|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at sc0000348:297069..298715 (Clytia hemisphaerica)
ATGGTTGAGTTGATTGAGAGCCCTGTAGAATCACCTGAAGCAGTTGAAGA
TCCAACTCAAGCATTAAAAGAACAATTGAAGCAAAAAGAAGTTGTACAAG
CTGAAGTGGCGGAAGAAGAAAATGGCGGAGCTGAAGAAACAGAAAATGGG
GTAGAAGAATCTAACGGTGAAGAAGCTGTTCCCGACGAAGAAcctaagga
agaagaagaagaagcaaaGGAAACAGCCTCCGTATCCGAAGAGACAGACA
CCAACGGGGCATCAGAGAAAGGCACCGACGTTGCAGAGCCAGTCGTTGAA
GAGgaaaagaaagtgaagaaaacaAAGAAGCGATCTTCGAGCAGTGAAGA
GAAACGTGCTTCATTGGGAAAAAGAAGACGATCAAGCTCACGACTCGTAA
ATcaagaaaatggtaaaaaactATCAAGTGAAATCTCAAGTGATAATTTG
AATTTCGCTAAACGAATCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020090-exon-sc0000348-1491911889:297069..298715 | TCONS_00020090-exon-sc0000348-1491911889:297069..298715 | Clytia hemisphaerica | exon |
| TCONS_00020090-exon-sc0000348-1510915933:297069..298715 | TCONS_00020090-exon-sc0000348-1510915933:297069..298715 | Clytia hemisphaerica | exon |
| TCONS_00020090-exon-sc0000348-1575043694:297069..298715 | TCONS_00020090-exon-sc0000348-1575043694:297069..298715 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000348 | supercontig | sc0000348:297069..298715 . |
Blast
The following BLAST results are available for this feature:
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