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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020086 ID=TCONS_00020086|Name=TCONS_00020086|organism=Clytia hemisphaerica|type=transcript|length=1536bp
GAAAGATTAGCACGTTTTATCTACTGAACATTTAGGGGAGAGAGAGGTGA
AAGAAACCATTTCTCGTGTGCAAGATGAATCAGGACAAACTACAGATCGG
TTTGAACATACTCTCCTACATACTCCTTATCACAACAAACTTTCTGAACT
GGATGTTATTCAAGTTTGCAATCACCAAGAAACagaaagaaataaacaaa
agctCGCGTAGAAAATCCAAAACCATTCTCAAAGGTATTTCGATGAGTTT
GCTGGTATATACTCTCACATCCACCATCACCAATCTACACCATACCTTAC
AACACCATCTGAAATATGTTCAATTGGAGACTCTCTGCACCATGGATGTC
TTGATCAATGAAACTTTTTACATCTTAGTAACGTCACAAGTAGCCTTGTT
GCTCTTCCATCGCTACAACCACATGGTGTCGCAGGCTATCGGTCGAGAAG
CATACATCAAGAGGAGTTACTGTTACATTTTGTTTTTATGCATCATCAGT
GCAATTCTTCTGATGGCTGAAATATTTGCTTATCTGAAGATCTTGGAACC
GTTCTTCCATATATTCTCCATACTGATAAATACATCCATGTTTTTAGCCA
TTTTGTTTGTCTTATTATACGCTATCGTCGGAACGAAGAAGGAAATTAAA
AACAGATACAAAGGTTTCATTCTTACTTGGAACACTTTAAATGGGCAGTT
CTTGTATGTGACCTTGTTTATCatttacttttctttcaaaGTATTGCGAG
AAAGCGGGTTAACGGATACCTTaaaacccatcaaaattttAGGGAATTTT
TATTTCTTGATTTTATTGGTTCTTTATTACACCAACGATCGTAACTTCCG
CTCGTATGTCAAAAAGCGAACGTTGCGCGGGCCGCCAGTCGTGCCTATTG
AGAGTGCGAAGTCTGTACGCAAGAGAAAGCGTACGAGAGGTTCGGCGACG
TTCACGCTTTGTTCTCGATGTAAATTACCACAGTTCAAAGATAACGAGGT
ATCGTCGTCATCGAGTCAAGTGGTTTGCGAGCGTTGCGGACAAGAAGAGA
ACGAAGAGAACGAAGAGATTGACCGCTATTCAGTCATCAGTCAACTCGAA
GGTTTAGAGCTTCGAAGAAAAGACATCTCAACACCGGTCAAATTACTCAT
CACGTCAGCTTTTCACATCAAAGCAGCGCATGGGATTTTAGCTAAGGAGA
ATGTAGTAGCCACCCACTGGAAAAAAGTTTCACTGAAAAAGCGTAGTAAA
TCGCAACAAAACTGTTCGAATGAAGGGGCAAGTAGTGGGAGACATTCGTT
AGGAGTAAGGAGTCAGAGTGATCAACATATTGTCTCTTATGGGACGTAAT
CAGACTTTTTCGGCCAAATTGTGTGTATTTTGAATAGAATACATTTTCAA
GTATGCATTGACAGTAGGATGTGTTCAAGTGactctctctctttctctct
ccGACTTACTCCTTATAACAATAATTTTTCTGAACTGGATGTTATTCAAG
TTTGCAATCACCAAGAAGGAAAGaaataaacaagaa Run BLAST on NCBI protein sequence of TCONS_00020086-protein >TCONS_00020086-protein ID=TCONS_00020086-protein|Name=TCONS_00020086-protein|organism=Clytia hemisphaerica|type=polypeptide|length=424bp
MNQDKLQIGLNILSYILLITTNFLNWMLFKFAITKKQKEINKSSRRKSKT
ILKGISMSLLVYTLTSTITNLHHTLQHHLKYVQLETLCTMDVLINETFYI
LVTSQVALLLFHRYNHMVSQAIGREAYIKRSYCYILFLCIISAILLMAEI
FAYLKILEPFFHIFSILINTSMFLAILFVLLYAIVGTKKEIKNRYKGFIL
TWNTLNGQFLYVTLFIIYFSFKVLRESGLTDTLKPIKILGNFYFLILLVL
YYTNDRNFRSYVKKRTLRGPPVVPIESAKSVRKRKRTRGSATFTLCSRCK
LPQFKDNEVSSSSSQVVCERCGQEENEENEEIDRYSVISQLEGLELRRKD
ISTPVKLLITSAFHIKAAHGILAKENVVATHWKKVSLKKRSKSQQNCSNE
GASSGRHSLGVRSQSDQHIVSYGT Run BLAST on NCBI transcript from alignment at sc0000348:125139..126674 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020086 ID=TCONS_00020086|Name=TCONS_00020086|organism=Clytia hemisphaerica|type=transcript|length=1536bp|location=Sequence derived from alignment at sc0000348:125139..126674 (Clytia hemisphaerica)
ttcttgtttatttCTTTCCTTCTTGGTGATTGCAAACTTGAATAACATCC
AGTTCAGAAAAATTATTGTTATAAGGAGTAAGTCggagagagaaagagag
agagtCACTTGAACACATCCTACTGTCAATGCATACTTGAAAATGTATTC
TATTCAAAATACACACAATTTGGCCGAAAAAGTCTGATTACGTCCCATAA
GAGACAATATGTTGATCACTCTGACTCCTTACTCCTAACGAATGTCTCCC
ACTACTTGCCCCTTCATTCGAACAGTTTTGTTGCGATTTACTACGCTTTT
TCAGTGAAACTTTTTTCCAGTGGGTGGCTACTACATTCTCCTTAGCTAAA
ATCCCATGCGCTGCTTTGATGTGAAAAGCTGACGTGATGAGTAATTTGAC
CGGTGTTGAGATGTCTTTTCTTCGAAGCTCTAAACCTTCGAGTTGACTGA
TGACTGAATAGCGGTCAATCTCTTCGTTCTCTTCGTTCTCTTCTTGTCCG
CAACGCTCGCAAACCACTTGACTCGATGACGACGATACCTCGTTATCTTT
GAACTGTGGTAATTTACATCGAGAACAAAGCGTGAACGTCGCCGAACCTC
TCGTACGCTTTCTCTTGCGTACAGACTTCGCACTCTCAATAGGCACGACT
GGCGGCCCGCGCAACGTTCGCTTTTTGACATACGAGCGGAAGTTACGATC
GTTGGTGTAATAAAGAACCAATAAAATCAAGAAATAAAAATTCCCTaaaa
ttttgatgggttttAAGGTATCCGTTAACCCGCTTTCTCGCAATACtttg
aaagaaaagtaaatGATAAACAAGGTCACATACAAGAACTGCCCATTTAA
AGTGTTCCAAGTAAGAATGAAACCTTTGTATCTGTTTTTAATTTCCTTCT
TCGTTCCGACGATAGCGTATAATAAGACAAACAAAATGGCTAAAAACATG
GATGTATTTATCAGTATGGAGAATATATGGAAGAACGGTTCCAAGATCTT
CAGATAAGCAAATATTTCAGCCATCAGAAGAATTGCACTGATGATGCATA
AAAACAAAATGTAACAGTAACTCCTCTTGATGTATGCTTCTCGACCGATA
GCCTGCGACACCATGTGGTTGTAGCGATGGAAGAGCAACAAGGCTACTTG
TGACGTTACTAAGATGTAAAAAGTTTCATTGATCAAGACATCCATGGTGC
AGAGAGTCTCCAATTGAACATATTTCAGATGGTGTTGTAAGGTATGGTGT
AGATTGGTGATGGTGGATGTGAGAGTATATACCAGCAAACTCATCGAAAT
ACCTTTGAGAATGGTTTTGGATTTTCTACGCGagcttttgtttatttctt
tctGTTTCTTGGTGATTGCAAACTTGAATAACATCCAGTTCAGAAAGTTT
GTTGTGATAAGGAGTATGTAGGAGAGTATGTTCAAACCGATCTGTAGTTT
GTCCTGATTCATCTTGCACACGAGAAATGGTTTCTTTCACCTCTCTCTCC
CCTAAATGTTCAGTAGATAAAACGTGCTAATCTTTC Coding sequence (CDS) from alignment at sc0000348:125139..126674 >TCONS_00020086 ID=TCONS_00020086|Name=TCONS_00020086|organism=Clytia hemisphaerica|type=CDS|length=1275bp|location=Sequence derived from alignment at sc0000348:125139..126674 (Clytia hemisphaerica)
TTACGTCCCATAAGAGACAATATGTTGATCACTCTGACTCCTTACTCCTA
ACGAATGTCTCCCACTACTTGCCCCTTCATTCGAACAGTTTTGTTGCGAT
TTACTACGCTTTTTCAGTGAAACTTTTTTCCAGTGGGTGGCTACTACATT
CTCCTTAGCTAAAATCCCATGCGCTGCTTTGATGTGAAAAGCTGACGTGA
TGAGTAATTTGACCGGTGTTGAGATGTCTTTTCTTCGAAGCTCTAAACCT
TCGAGTTGACTGATGACTGAATAGCGGTCAATCTCTTCGTTCTCTTCGTT
CTCTTCTTGTCCGCAACGCTCGCAAACCACTTGACTCGATGACGACGATA
CCTCGTTATCTTTGAACTGTGGTAATTTACATCGAGAACAAAGCGTGAAC
GTCGCCGAACCTCTCGTACGCTTTCTCTTGCGTACAGACTTCGCACTCTC
AATAGGCACGACTGGCGGCCCGCGCAACGTTCGCTTTTTGACATACGAGC
GGAAGTTACGATCGTTGGTGTAATAAAGAACCAATAAAATCAAGAAATAA
AAATTCCCTaaaattttgatgggttttAAGGTATCCGTTAACCCGCTTTC
TCGCAATACtttgaaagaaaagtaaatGATAAACAAGGTCACATACAAGA
ACTGCCCATTTAAAGTGTTCCAAGTAAGAATGAAACCTTTGTATCTGTTT
TTAATTTCCTTCTTCGTTCCGACGATAGCGTATAATAAGACAAACAAAAT
GGCTAAAAACATGGATGTATTTATCAGTATGGAGAATATATGGAAGAACG
GTTCCAAGATCTTCAGATAAGCAAATATTTCAGCCATCAGAAGAATTGCA
CTGATGATGCATAAAAACAAAATGTAACAGTAACTCCTCTTGATGTATGC
TTCTCGACCGATAGCCTGCGACACCATGTGGTTGTAGCGATGGAAGAGCA
ACAAGGCTACTTGTGACGTTACTAAGATGTAAAAAGTTTCATTGATCAAG
ACATCCATGGTGCAGAGAGTCTCCAATTGAACATATTTCAGATGGTGTTG
TAAGGTATGGTGTAGATTGGTGATGGTGGATGTGAGAGTATATACCAGCA
AACTCATCGAAATACCTTTGAGAATGGTTTTGGATTTTCTACGCGagctt
ttgtttatttctttctGTTTCTTGGTGATTGCAAACTTGAATAACATCCA
GTTCAGAAAGTTTGTTGTGATAAGGAGTATGTAGGAGAGTATGTTCAAAC
CGATCTGTAGTTTGTCCTGATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020086-exon-sc0000348-1491911889:125139..126674 | TCONS_00020086-exon-sc0000348-1491911889:125139..126674 | Clytia hemisphaerica | exon |
| TCONS_00020086-exon-sc0000348-1510915933:125139..126674 | TCONS_00020086-exon-sc0000348-1510915933:125139..126674 | Clytia hemisphaerica | exon |
| TCONS_00020086-exon-sc0000348-1575043694:125139..126674 | TCONS_00020086-exon-sc0000348-1575043694:125139..126674 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000348 | supercontig | sc0000348:125139..126674 . |
Blast
The following BLAST results are available for this feature:
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