TCONS_00020084 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020084
Unique NameTCONS_00020084
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length205

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020084 ID=TCONS_00020084|Name=TCONS_00020084|organism=Clytia hemisphaerica|type=transcript|length=205bp
ANAAAAATCcattataataattataatttaaatttatgaTCTCTTACATT
TGACGGTCAAACACTTGCAGATGGAATAATTTCGTTAGTAAAAAATTTGT
ACATAAAGAGGGGAAGACCTTTAACCTCCGAAGGTCGGGGTGACGGATGC
CATTGGTTCGGAGATAATGTTTCCTCCAAAATAAACAGCCACTGGGGGTT
TTACA
Run BLAST on NCBI

transcript from alignment at sc0000348:109762..109966

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020084 ID=TCONS_00020084|Name=TCONS_00020084|organism=Clytia hemisphaerica|type=transcript|length=205bp|location=Sequence derived from alignment at sc0000348:109762..109966 (Clytia hemisphaerica)
TGTAAAACCCCCAGTGGCTGTTTATTTTGGAGGAAACATTATCTCCGAAC
CAATGGCATCCGTCACCCCGACCTTCGGAGGTTAAAGGTCTTCCCCTCTT
TATGTACAAATTTTTTACTAACGAAATTATTCCATCTGCAAGTGTTTGAC
CGTCAAATGTAAGAGAtcataaatttaaattataattattataatgGATT
TTTNT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011288XLOC_011288Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020084-exon-sc0000348-1491911889:109762..109966TCONS_00020084-exon-sc0000348-1491911889:109762..109966Clytia hemisphaericaexon
TCONS_00020084-exon-sc0000348-1510915933:109762..109966TCONS_00020084-exon-sc0000348-1510915933:109762..109966Clytia hemisphaericaexon
TCONS_00020084-exon-sc0000348-1575043694:109762..109966TCONS_00020084-exon-sc0000348-1575043694:109762..109966Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:109762..109966 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.95675	6.20889	5.20861	0	0	0	0	0	6.22542	7.6352	16.6149	7.49762	1.77015	7.48772	1.6627	3.75959	1.11008	1.15632	0	0	0	2.12846	10.1614	7.00176	0	0	26.8228	57.9367	7.1268	3.61878
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020084 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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