|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020082 ID=TCONS_00020082|Name=TCONS_00020082|organism=Clytia hemisphaerica|type=transcript|length=763bp
CGTTTAAAGATGTTATATTTGCAAGAAAAATAGAAGTTATTTTTATGTTC
AGATGCGTAGACGTTTGAAGAGCTGctcaaaatcttcattttcatcatca
tGCTCAACGTTTGCCAAAGATTTTCTCTTCCGTCCTTTTGAGACGTTTGA
TTTAGCTTCGTTAAGTGTTTTAGTGACATAGTCAGTTGGTGTGAATAGCT
TGTTGACTTTGGTTTCTCCTGAGCGGACATCTGATgaaattgtcatttta
ttggtGAACTGGTCTGTAAGATCTTTGAAGACTTTGTCATCTGTAGATTT
GTAGACTGTTGATTCACCCATTTCGACACAAGGAAGTGGACGTTGTTGAA
TGAGATCATTCGCGTCTCGGCGTTTTGCTTTAATAACAACACGAGCCTCA
GTGAAAGGTTGAGATTTGAGAACGGCGTTCTTGTATGAAGCTTTCAGAAC
ACGATGGTACTGCTTCAAATTGATTTGAGAACGTCCAGTGTTCAACTTCT
TTATGTTTGAATTCTCCAATGCAAATGCCATTGCACGAGGATTCTTGGAT
TTTCCGATCTGATGAAATTCATCTCGggattcaatttttgaatgcaaATC
GACGACTGATTTGCGTTTTGCggtgaaaacttttgcacgAGTGATATCGA
CCTTTGTCTCAGAAGCAATATTGAACAAAgatttgcttgaaacgttcgAG
TTTTCACCGAAGACTTTTATTTTActcaaaatacacatttttcaaGACTT
TCTGCGACTGGAT Run BLAST on NCBI protein sequence of TCONS_00020082-protein >TCONS_00020082-protein ID=TCONS_00020082-protein|Name=TCONS_00020082-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
MCILSKIKVFGENSNVSSKSLFNIASETKVDITRAKVFTAKRKSVVDLHS
KIESRDEFHQIGKSKNPRAMAFALENSNIKKLNTGRSQINLKQYHRVLKA
SYKNAVLKSQPFTEARVVIKAKRRDANDLIQQRPLPCVEMGESTVYKSTD
DKVFKDLTDQFTNKMTISSDVRSGETKVNKLFTPTDYVTKTLNEAKSNVS
KGRKRKSLANVEHDDENEDFEQLFKRLRI Run BLAST on NCBI transcript from alignment at sc0000348:16960..17722 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020082 ID=TCONS_00020082|Name=TCONS_00020082|organism=Clytia hemisphaerica|type=transcript|length=763bp|location=Sequence derived from alignment at sc0000348:16960..17722 (Clytia hemisphaerica)
ATCCAGTCGCAGAAAGTCttgaaaaatgtgtattttgagTAAAATAAAAG
TCTTCGGTGAAAACTcgaacgtttcaagcaaatcTTTGTTCAATATTGCT
TCTGAGACAAAGGTCGATATCACTcgtgcaaaagttttcaccGCAAAACG
CAAATCAGTCGTCGATttgcattcaaaaattgaatccCGAGATGAATTTC
ATCAGATCGGAAAATCCAAGAATCCTCGTGCAATGGCATTTGCATTGGAG
AATTCAAACATAAAGAAGTTGAACACTGGACGTTCTCAAATCAATTTGAA
GCAGTACCATCGTGTTCTGAAAGCTTCATACAAGAACGCCGTTCTCAAAT
CTCAACCTTTCACTGAGGCTCGTGTTGTTATTAAAGCAAAACGCCGAGAC
GCGAATGATCTCATTCAACAACGTCCACTTCCTTGTGTCGAAATGGGTGA
ATCAACAGTCTACAAATCTACAGATGACAAAGTCTTCAAAGATCTTACAG
ACCAGTTCaccaataaaatgacaatttcATCAGATGTCCGCTCAGGAGAA
ACCAAAGTCAACAAGCTATTCACACCAACTGACTATGTCACTAAAACACT
TAACGAAGCTAAATCAAACGTCTCAAAAGGACGGAAGAGAAAATCTTTGG
CAAACGTTGAGCatgatgatgaaaatgaagattttgagCAGCTCTTCAAA
CGTCTACGCATCTGAACATAAAAATAACTTCTATTTTTCTTGCAAATATA
ACATCTTTAAACG Coding sequence (CDS) from alignment at sc0000348:16960..17722 >TCONS_00020082 ID=TCONS_00020082|Name=TCONS_00020082|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at sc0000348:16960..17722 (Clytia hemisphaerica)
atgtgtattttgagTAAAATAAAAGTCTTCGGTGAAAACTcgaacgtttc
aagcaaatcTTTGTTCAATATTGCTTCTGAGACAAAGGTCGATATCACTc
gtgcaaaagttttcaccGCAAAACGCAAATCAGTCGTCGATttgcattca
aaaattgaatccCGAGATGAATTTCATCAGATCGGAAAATCCAAGAATCC
TCGTGCAATGGCATTTGCATTGGAGAATTCAAACATAAAGAAGTTGAACA
CTGGACGTTCTCAAATCAATTTGAAGCAGTACCATCGTGTTCTGAAAGCT
TCATACAAGAACGCCGTTCTCAAATCTCAACCTTTCACTGAGGCTCGTGT
TGTTATTAAAGCAAAACGCCGAGACGCGAATGATCTCATTCAACAACGTC
CACTTCCTTGTGTCGAAATGGGTGAATCAACAGTCTACAAATCTACAGAT
GACAAAGTCTTCAAAGATCTTACAGACCAGTTCaccaataaaatgacaat
ttcATCAGATGTCCGCTCAGGAGAAACCAAAGTCAACAAGCTATTCACAC
CAACTGACTATGTCACTAAAACACTTAACGAAGCTAAATCAAACGTCTCA
AAAGGACGGAAGAGAAAATCTTTGGCAAACGTTGAGCatgatgatgaaaa
tgaagattttgagCAGCTCTTCAAACGTCTACGCATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020082-exon-sc0000348-1491911889:16960..17722 | TCONS_00020082-exon-sc0000348-1491911889:16960..17722 | Clytia hemisphaerica | exon |
| TCONS_00020082-exon-sc0000348-1510915933:16960..17722 | TCONS_00020082-exon-sc0000348-1510915933:16960..17722 | Clytia hemisphaerica | exon |
| TCONS_00020082-exon-sc0000348-1575043694:16960..17722 | TCONS_00020082-exon-sc0000348-1575043694:16960..17722 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000348 | supercontig | sc0000348:16960..17722 . |
Blast
The following BLAST results are available for this feature:
|
