TCONS_00020081 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020081
Unique NameTCONS_00020081
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length698

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020081 ID=TCONS_00020081|Name=TCONS_00020081|organism=Clytia hemisphaerica|type=transcript|length=698bp
AGAACGTTCATCCAATCAAAAGGAGCAACATAACATTCAAAAAGAAAGCC
GAACAAAGGCATTGGACAAACTTAAAGATGAAATCGAAGGTGCTCTGCTC
GACAATCGTACGTTGGCTGAAAGATATGTGGAATATCAAAATTGTCACAT
GGATCAGAAAAATGCGTTTATTTCTTCATACGAGAAAGCTCTTATCGCAC
ACGATAGTCTGAAAGACAAAGAGAACCTTTGTGATCTACACACTCGTCTA
CACGAGGCGTTGGAATGTTACTACCAATTACGTGGGATACAAACCAAAGC
CAGCCTATCACGTTTCGAGAAGATGACTCATCACAGCAACCGAAAGCTTG
AGAATATCCAAACGAACTTGGAAGTTGCCACTCGAAATATCACATTGTTC
TTGAAAGCTAATAACTTAACACATCAACATATCCGAGATATGTCAAAAGC
TATGGGCAAACTTTCGGTTTGATTGATTTGACGTTCCTCCTTTGGACTTT
AAAGCAGTGTTTTTAAATGGCTTGATTGTTTTTTACTTAATATGTGATAT
GAGATGAGATAGAAAAAAGAACAATGAATTACATACATCTTTTCAACAAA
TACTTTCAGATGTTCACCTCCCATTCCAGgtaatgaaatttttattctcC
CAAATATACTGTATTATATTTTTGTACAAAAGAGTATGtggatattta
Run BLAST on NCBI

protein sequence of TCONS_00020081-protein

>TCONS_00020081-protein ID=TCONS_00020081-protein|Name=TCONS_00020081-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
ERSSNQKEQHNIQKESRTKALDKLKDEIEGALLDNRTLAERYVEYQNCHM
DQKNAFISSYEKALIAHDSLKDKENLCDLHTRLHEALECYYQLRGIQTKA
SLSRFEKMTHHSNRKLENIQTNLEVATRNITLFLKANNLTHQHIRDMSKA
MGKLSV
Run BLAST on NCBI

transcript from alignment at sc0000348:302759..303932-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020081 ID=TCONS_00020081|Name=TCONS_00020081|organism=Clytia hemisphaerica|type=transcript|length=1174bp|location=Sequence derived from alignment at sc0000348:302759..303932- (Clytia hemisphaerica)
AGAACGTTCATCCAATCAAAAGGAGCAACATAACATTCAAAAAGAAAGCC
GAACAAAGGCATTGGACAAACTTAAAGTATTCTTTTCCCTCTTTTCTTTC
CATACTTTATCCAAGTTTTTCATCCATAGATTTTGAAAAATTGCAGGGGA
AAACAAGTTGGGTAAAGTGATAATTTTTGTTGTATAGCACATTATAAATC
TATTCCCCCAATATGAAATAAATATAAATCGGACCATTTTCCTCGATGAG
GTATTATTGATGAATTAATATATTTTTCGATGTATACTCTTGTTTTTTTA
TCGGAAGGATGAAATCGAAGGTGCTCTGCTCGACAATCGTACGTTGGCTG
AAAGATATGTGGAATATCAAAATTGTCACATGGATCAGAAAAATGCGTTT
ATTTCTTCATACGAGAAAGCTCTTATCGCACACGATAGTCTGAAAGACAA
AGAGAACGTAAGAAAGCATGCTGTGTTATACACACTATTTTCACATTTTC
AAACGTGACAGTCAGTTACCACATTCTTGTTGAATTACTTTTTTGCTGTA
CATAATGCTATCTACCTTCGAACAAACCATGTGTGGTTGTGTCCCAGGGA
TCCATAGGATTGGTTGATAAAACTTTTAACGTGGTTACAGACTAAACATG
AATACAAAGTCTCTTTTATCCTTTATTATTTACCTTGTTCATACAATTCT
AGCTTTGTGATCTACACACTCGTCTACACGAGGCGTTGGAATGTTACTAC
CAATTACGTGGGATACAAACCAAAGCCAGCCTATCACGTTTCGAGAAGAT
GACTCATCACAGCAACCGAAAGCTTGAGAATATCCAAACGAACTTGGAAG
TTGCCACTCGAAATATCACATTGTTCTTGAAAGCTAATAACTTAACACAT
CAACATATCCGAGATATGTCAAAAGCTATGGGCAAACTTTCGGTTTGATT
GATTTGACGTTCCTCCTTTGGACTTTAAAGCAGTGTTTTTAAATGGCTTG
ATTGTTTTTTACTTAATATGTGATATGAGATGAGATAGAAAAAAGAACAA
TGAATTACATACATCTTTTCAACAAATACTTTCAGATGTTCACCTCCCAT
TCCAGGTAATGAAATTTTTATTCTCCCAAATATACTGTATTATATTTTTG
TACAAAAGAGTATGTGGATATTTA

Coding sequence (CDS) from alignment at sc0000348:302759..303932-

>TCONS_00020081 ID=TCONS_00020081|Name=TCONS_00020081|organism=Clytia hemisphaerica|type=CDS|length=1413bp|location=Sequence derived from alignment at sc0000348:302759..303932- (Clytia hemisphaerica)
CTTTGTGATCTACACACTCGTCTACACGAGGCGTTGGAATGTTACTACCA
ATTACGTGGGATACAAACCAAAGCCAGCCTATCACGTTTCGAGAAGATGA
CTCATCACAGCAACCGAAAGCTTGAGAATATCCAAACGAACTTGGAAGTT
GCCACTCGAAATATCACATTGTTCTTGAAAGCTAATAACTTAACACATCA
ACATATCCGAGATATGTCAAAAGCTATGGGCAAACTTTCGGTTTGAGATG
AAATCGAAGGTGCTCTGCTCGACAATCGTACGTTGGCTGAAAGATATGTG
GAATATCAAAATTGTCACATGGATCAGAAAAATGCGTTTATTTCTTCATA
CGAGAAAGCTCTTATCGCACACGATAGTCTGAAAGACAAAGAGAACGAAC
GTTCATCCAATCAAAAGGAGCAACATAACATTCAAAAAGAAAGCCGAACA
AAGGCATTGGACAAACTTAAACTTTGTGATCTACACACTCGTCTACACGA
GGCGTTGGAATGTTACTACCAATTACGTGGGATACAAACCAAAGCCAGCC
TATCACGTTTCGAGAAGATGACTCATCACAGCAACCGAAAGCTTGAGAAT
ATCCAAACGAACTTGGAAGTTGCCACTCGAAATATCACATTGTTCTTGAA
AGCTAATAACTTAACACATCAACATATCCGAGATATGTCAAAAGCTATGG
GCAAACTTTCGGTTTGAGATGAAATCGAAGGTGCTCTGCTCGACAATCGT
ACGTTGGCTGAAAGATATGTGGAATATCAAAATTGTCACATGGATCAGAA
AAATGCGTTTATTTCTTCATACGAGAAAGCTCTTATCGCACACGATAGTC
TGAAAGACAAAGAGAACGAACGTTCATCCAATCAAAAGGAGCAACATAAC
ATTCAAAAAGAAAGCCGAACAAAGGCATTGGACAAACTTAAACTTTGTGA
TCTACACACTCGTCTACACGAGGCGTTGGAATGTTACTACCAATTACGTG
GGATACAAACCAAAGCCAGCCTATCACGTTTCGAGAAGATGACTCATCAC
AGCAACCGAAAGCTTGAGAATATCCAAACGAACTTGGAAGTTGCCACTCG
AAATATCACATTGTTCTTGAAAGCTAATAACTTAACACATCAACATATCC
GAGATATGTCAAAAGCTATGGGCAAACTTTCGGTTTGAGATGAAATCGAA
GGTGCTCTGCTCGACAATCGTACGTTGGCTGAAAGATATGTGGAATATCA
AAATTGTCACATGGATCAGAAAAATGCGTTTATTTCTTCATACGAGAAAG
CTCTTATCGCACACGATAGTCTGAAAGACAAAGAGAACGAACGTTCATCC
AATCAAAAGGAGCAACATAACATTCAAAAAGAAAGCCGAACAAAGGCATT
GGACAAACTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011285XLOC_011285Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020081-proteinTCONS_00020081-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020081-exon-sc0000348-1575043694:303857..303932TCONS_00020081-exon-sc0000348-1575043694:303857..303932Clytia hemisphaericaexon
TCONS_00020081-exon-sc0000348-1575043694:303476..303625TCONS_00020081-exon-sc0000348-1575043694:303476..303625Clytia hemisphaericaexon
TCONS_00020081-exon-sc0000348-1575043694:302759..303230TCONS_00020081-exon-sc0000348-1575043694:302759..303230Clytia hemisphaericaexon
TCONS_00020081-exon-sc0000348-1510915933:303857..303932TCONS_00020081-exon-sc0000348-1510915933:303857..303932Clytia hemisphaericaexon
TCONS_00020081-exon-sc0000348-1510915933:303476..303625TCONS_00020081-exon-sc0000348-1510915933:303476..303625Clytia hemisphaericaexon
TCONS_00020081-exon-sc0000348-1510915933:302759..303230TCONS_00020081-exon-sc0000348-1510915933:302759..303230Clytia hemisphaericaexon
TCONS_00020081-exon-sc0000348-1491911889:303857..303932TCONS_00020081-exon-sc0000348-1491911889:303857..303932Clytia hemisphaericaexon
TCONS_00020081-exon-sc0000348-1491911889:303476..303625TCONS_00020081-exon-sc0000348-1491911889:303476..303625Clytia hemisphaericaexon
TCONS_00020081-exon-sc0000348-1491911889:302759..303230TCONS_00020081-exon-sc0000348-1491911889:302759..303230Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:302759..303932 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.98581	1.3516	1.93743	2.53842	10.0005	7.86364	7.43197	7.73262	6.93077	6.40328	8.16981	5.44164	5.04673	3.99073	3.26659	3.22521	2.50764	3.208	4.26011	4.76759	3.88674	2.9452	1.5219	2.24274	11.8253	12.0172	2.97416	3.42118	2.85772	2.12554
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020081 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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