TCONS_00020074 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020074
Unique NameTCONS_00020074
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2138

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020074 ID=TCONS_00020074|Name=TCONS_00020074|organism=Clytia hemisphaerica|type=transcript|length=2138bp
tTCAGAGGAAAAGTATAATGAGTATTGGTTAGATTGTAATGAGGAAAGCT
GCTTGGTCTCTTGTGTCATACCATCAAAGATCTTTTCAAATATGTTCTTC
CCTTCAAAGTCAAGTCCAGCAAGACATAGCAATCGAGAAATCTGAGCATG
GACCTGAAGGTACATACAAATCACTGCTTGAGAATGGATTACTAAAAGTC
GACGAAGAACAACAAAGAGTTGTGTATCGTCTACAAAAGCTTTACCAAGA
TGTGAGAACATACAATAAGACTTCAGCATCCAATTTGTTTGGCAAACTGT
TCTCTTTTTCATCACAGAGTAGTAATGCACCAAGAGGTGTTTATCTGTAT
GGATCGGTCGGTTGTGGTAAAACCATGTTAATGGACATGTTGTACAagaa
tgtcgacattagaccaaagAAGAGAGTACATTTCAACCAATTCATGATTG
ATGTTCACAAGAGGATCCATCAATTCAAATTAGACGCTCCACCTGTCGAT
CACAGAAGCAGAACATCCAAACCACTCGATCCCATACCTCCCATCGCTAA
AGACATCTCTGATGAGACATGGTTCTTGTGTTTTGACGAATTCCAAGTGA
CAGATGTAGCAGACGCCATGATTTTGAAACGTTTGTTCACGTGTTTGTTC
GAAAATGGAGTTATTGTTATCGCCACATCGAATCGACACCCTCAAGATTT
GTACAAGAATGGTCTTCAAAGAGGCAATTTTCTCCCCTTCATTCCCATCT
TAGAGaGATATTGTGAAATCGTACCTCTATCTGGTGTTGATTATCGAAGA
TTAGaattttcgGACATTTCGAAAACATACTTCAATTCACAAGACGCGTC
TACAAAAGACAAATTAGAGGATGTTTTCAAATTGTTGTGTGAAAACGAAA
AACAAGACGTAAAACCCAAAACTGTGGAAGTGTATGGACGCAACAATGTC
TTTCAACGAGCATGCGGGAAGGTTGCTTTTACAAACTTTGATGAACTTTG
TAGAAAGGCTCTTGGTGCAGCGGATTACATCGCGTTTGCCAAGACTTTCG
ACACCATCATTCTTACTGATGTCCCGGTCATGAGTCCACGAAGGAAAGTC
GAATTAAGGAGGTTTATCACTCTCATTGATAACTTCTATGATAATAAGGT
GCGGTTGATCCTTTCAGCAGCGCAACCGTTAGACAATCTGTTCATCACCA
ACGAAACTATGAACGATTATGATGCAGAAGCAAAACGCATGTTAATGGAC
GACCTCGGTCTCATTGGTACCCAAGATGAAGATCACAACATTAGCCTGTT
TACCGCtgaagaagaaattttcgccaTCGAACGAACAGTATCCAGGCTAA
CTGAAATGCAAAGTGAACAATATTGGCAGGCTAGTGAAGATGAAAGTaac
aatcaaaattgaaaatggtgTTGTATATGTATTTATCTAAATAGTTGTGC
ACTAGGATTGGTTTGTAATAGAACTTTTCATAAACTAAgtcacgagcaac
gcttacctcgttttcaaaatattgctttggtaattgattcccagaTGGGC
AAAAGCAGTTGGCAGGTAAACAATACAGAGAAttgaaataaagatttttc
tggaaaatttagAGAGTTTATTTTCGTCGGAAAAAAAGTTCCCTGTGATA
AGAGATCTAAGAAAAGATCGTTTTGAGTATTTTCTTGCAATCACTAAGTT
CTGACGGTAATTTCTGATCATGAAGATGACATTTTCGATTGATATTGCTT
GCGGTCTTCTCCCAATGCATTTCATGAATGAAAGCTACTGAACTTAATAC
GTTCAAAAAGGAAGCTTCTATCTGTCCATCTAGTAGGCAAAGGAAGGTAG
GTCTTAAACGGATAGGTAATTTTTCTATGTCCTGTTTATGTAAAAGCTTT
TACTGTTCAGATAAATACTTATGAAAATTGATAGtacatatttttacaat
tttataatACAAGTTTTATTTTCTAGAATGTATGCTAATTTCGTAATCAG
CTATGACTCGAAAAAGATATCGTATAATTTATTTGCTGGATCGAAAAAAT
ACGCCATCTTTTGTTTATTTACGGTATTTTTGCCCTGAGAAACaatgtgt
gtattttacagaccagtaaGCATTGACAAATACCATCA
Run BLAST on NCBI

transcript from alignment at sc0000348:279435..287193-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020074 ID=TCONS_00020074|Name=TCONS_00020074|organism=Clytia hemisphaerica|type=transcript|length=7759bp|location=Sequence derived from alignment at sc0000348:279435..287193- (Clytia hemisphaerica)
TTCAGAGGAAAAGTATAATGAGTATTGGTTAGATTGTAATGAGGAAAGCT GCTTGGTCTCTTGTGTCATACCATCAAAGATCTTTTCAAATATGTTCTTC CCTTCAAAGTCAAGGTATTGATTTTTTTAGAACATGGATTGTCAACTGTC CTGAACTGTCGAAACCTACTTCGAATTTGAAATAGACATTCATTTTAACG TGCGATAAGTTGCTTTACTAACAGTATTGTTTTCTCAAATGTATTAGAAT ACAATTCAAAATAGAGAATTTCATTTATTCAGGAGCTGGTGTATTTTGAC ATATCACATTCTTATATTTCAGTAGTCCAGCAAGACATAGCAATCGAGAA ATCTGAGCATGGACCTGAAGGTACATACAAATCACTGCTTGAGAATGGAT TACTAAAAGTCGACGAAGAACAACAAAGAGTTGTGTATCGTCTACAAAAG CTTTACCAAGATGTGAGAACATACAATAAGACTTCAGCATCCAATTTGTT TGGCAAACTGTTCTCTTTTTCATCACAGAGTAGTAATGCACCAAGAGGTG TTTATCTGTATGGATCGGTCGGTGAGTTTATATGAAGTTAGTACGTTTCT GCTTTAGAGCTCAAATTCAAGATGACTATTCAAACTGATAAAGTAATCTA GGCTAGTGCTTAAAATTAACCTGCTCACTTGTTACTGCTCATGGGGGAAG GCTATATTATTGAACATTTTGCAAGCGGAAATTACATTGACGGTAAGTCT ATCGCCATATATCCCTAACACCTTATCTGGAAGTGCTTGGATTTCGAACA CAGTCCATTGCAGTACAATTCTGTAATCGAAACCTTCACACTACTAATCG GTAGAATGTTATAAGGACATTGTGTTATTCAGATGGTGAAAGTATGTATT ATTGTTCTACATCTGTAATTTGGGCTTTTCTGATCTCAAATAAAATCCCT AATATTTAAAGATTGAAGAAATGCCCTTGGATTAGTTATTCCATTTTTAC CATTACAGGTTGTGGTAAAACCATGTTAATGGACATGTTGTACAAGAATG TCGACATTAGACCAAAGAAGAGAGTACATTTCAACCAATTCATGATTGAT GTTCACAAGAGGATCCATCAATTCAAATTAGACGCTCCACCTGTCGATCA CAGAAGCAGAACATCCAAACCACTCGATCCCATACCTCCCATCGCTAAAG ACATCTCTGATGAGACATGGTTCTTGTGTTTTGACGAATTCCAAGTTAGT TCATTATAGTGTTGCTTTTAGTTGCTTAACTTATTAATCTTGCTAAAATT GTTAAAATATTGCTGAAACGCTCGACATAGAACGAGCTTTTCTACAAAAA CTTATAGAAAATCGTGTTACTGAAAGTCTGACCTTTTGTAAAAACAGTCA AATTCAAACCTCTCTTAAAATGTCGCCATACTAATATTTTAAATCGTATG GGCTTTGTGAAAGAGTAAGACTACAATAACCTGCAATAACCCAGGCTACA AAATTATAGCTTTTAAGACTTTTTTCAACCTTACAACTTAAATTGTAACA TTGATTTAAGTTTGCAGAGTGTTAACGATGTAGCTGACAAAGGCCCCATC TCTAAACGAGTGCTTCGCAAATCTATTTATGGTTTCTTTGAGTTTTGTTC TTTTAAAATCCAAGTTCATTAATAATCTCATAACAGATCATCCATTCTCC GTACACAACGTTGTTTATGATTGACGGCTGATTTGGTGCGATTGTTTGGT GTATGCCAATCTCCGCGCTTAAAATCTCATTTAATATTCATCCAAAATCC AAACAAGACGACTTGAAGTCGAAAATTTCGCCTAGAATTTGAACTGCATG GGAAAACAAGAAGTAGAGATTGAAGCTAATCTGAAATCTACTTTACATCG AGACTTGATGAAACAATTTTACAAGAACAACGAGGCTTAAAATCGCTAAA AAAATAAGACCAATTTTAGAAAAATTGTTGTTTGATTTTTAAGAACTCAT TTAATGTATATGCTTATAAAAAAATAAATATACTCATATTGCACGCCATC CCTTGTTTACTTCGTAAGAACTAATTACCGAAAGGTATATCACCGTCTAT CGATTGATTTGATTCTTATAAAGTATATGCTTATAAGAAAAATAAATATA CTCAAATTGCACGCCATCCCTTGTTTACTTTGTATGAACTAATTACCGAA AGGTATATCATCGTCTATCGATTGATTTGATTCTTATAAAGTAAATGCCT ATAAGATAAATAAATATGCTTATTTTGTACGCCAACCCTAGTTTACTTTG CGAAAAACCTGCGAAAATCGTCCGTGGTTATACGAGCGTGTAATTTGTAA ATTGATTTTACTGAGTTCGTCCACCGTATCAAGTACTTTCTTTTTCTAAA TTTTTTCCTCACCACCGCCACAGAATGCTGATTGCAATACTTTCGCTAAG GCGAAATTAATAATGATATTATATTAACAATACTTAATTAATGAAAATAC TATTTGGAAATAAATACTGGTTGGATAAGTGGTGTAATAAATACTAGAGC AAGCCAGATAAATAATGAAAAAAACCCAAAAATGTAGACCGAACGATAGA TCTGCAAAAAACCTGAAAAGACCATGAAGATGAGAAACTGAAAAACCCTG TAAAAAACCAAACCTATCTTTATAATAAATACTATATTATCAAACGCTGC TCTTCACACGTCACTCAAACATGCATCAACGTCAATTTCGGATCTCTCAA TCTGGATGCGGCGCGCCAACCTGGACAAATTTACTTACAGTGTCATGGCT TTCAGAGTGACAGCGTGTTAGCGTGGAGTTAATAGAATCTGCTCGGAGAT TATTTTATTTGGCATTAATTTCCTGCTCATCAAGGAACGTATGTATTTTA TTACATCATGTTACATATTATGTTTTCAGGTGACAGATGTAGCAGACGCC ATGATTTTGAAACGTTTGTTCACGTGTTTGTTCGAAAATGGAGTTATTGT TATCGCCACATCGAATCGACACCCTCAAGGTATGAATTTCTCAGTCTCAT TCTGATTATCAGTGGCGCTAAAAGCAGTGTGGGGTATCATAATATCATAA GATTTTCATAGAAGTCATAAAACAAATGTCGATACAGTGCTCCATACGTA AGTAGAGCTTTTAAATATATATTTCAATTTGCTTAAAAATTTAAAAACAC ACTAATGCTGATTGCATTAAGCGTGAAACTGGCAGTAGTGTGTTTTTAAA TTTTTAAACAAATTGAACTATATATTAGGATATTCATATTTTGATTATTC TTGTTTAGATTTTATTTTCTTATCATTAGAATATACAGAACCTTGAAAAA TACACGATAAATGGCCCGAAAATCTCGAAGAATATAAAATCTGGCCAAAA CTCATACCCGAAACCTTCTAGAAGTGTAACGAGCACTGTTTCAACATTTG TTTTCAACAATGGTCCACAAAGCCTCTCTCAAAATAAATACAACATACTT TAGAATTGCCGAGAGGGTATTATCTTATGATTTTCATTTCACCAGATTTG TACAAGAATGGTCTTCAAAGAGGCAATTTTCTCCCCTTCATTCCCATCTT AGAGGTAAGTACGTCTTTTGTTCAGCAAAATAAAGTATTTATAGTACCAT GTGCACCATTATTCTTTTTCCGTTTGCTTTTTATATTTATTATTTTTCAG AAATACTATGAAATTGCGCCTCTATCTTATTTATTCTACCAATCTTTTTC ATATGATATTTCATATTTTAGAGATATTGTGAAATCGTACCTCTATCTGG TGTTGATTATCGAAGATTAGGTGAGTTGACCTTCTAATATTAAGTCTGAA AACTAAGTTGGCAAAACTTTAATCAAAGTCAAAAATTCTCTTGTTTACCT TGCCGGTGCAATCTTCAGGCAGTGCAGCTTTATTCCGATATACGAATATT CTAGAAAAAAATAACAACCCCGAACACAACCCCCAATGAAACACGGTGTA GCAGTTGTAAGTCAATTTTTTTTGAGCACTCTGTGATTCTTATAATTTAA TTCAATTTATGATATGAATTCGTTTTTCAACTAATCATTTCTTTCGAACA CTGCTTAACTCAATTTTTCTTCAACTTTTCAGAATTTTCGGACATTTCGA AAACATACTTCAATTCACAAGACGCGTCTACAAAAGACAAATTAGAGGAT GTTTTCAAATTGTTGTGTGAAAACGAAAAACAAGGTAATAAAAAAATACT TCCGTTGCCCTTGTCAATCTATTTATTACATCGCTGCTCATTGACTTTAA TAGGTCTCGCTTCTTGTGGGTCTTGTTTTTAGAGATTTTTTTTTTTCTCA GTCTTGCTTTAAATTAAAATCACGGAAAGAATGTGAAAGGTCTTCTTTGA ATCTGATTTGCTACAAGCCCTTAATGCTCTGCTGGAGACAAAAAAGACAA CGTTTCCTCTAAAACTTTGAAAATTCGATCTCAGTTTTTTATATGAGGAA ATGTATTGCTTTATTGTAGACGTAAAACCCAAAACTGTGGAAGTGTATGG ACGCAACAATGTCTTTCAACGAGCATGCGGGAAGGTTGCTTTTACAAACT TTGATGAACTTTGTAGAAAGGTAAGAACAGAAAATATCTTAAAGAAATAG AAATGCTTTCATTTCACTCATTCATCGAACTATCCAAAATGGTACACTCT TTTAGAGTTTTTAAAGATAGCTCATAACAATTTTAATGCATTTATGTTTT TTGAAGGGTTACTTAGTCTTCCGGAAGACTTATTGTTTTAATCGTGTGGT ATCAAATATTAAAAATCAAATCGTTTCATATCATGGCCAACTATTAATAA TGATATTTTTCCATTCATTCTTTGTACAGGCTCTTGGTGCAGCGGATTAC ATCGCGTTTGCCAAGACTTTCGACACCATCATTCTTACTGATGTCCCGGT CATGAGTCCACGAAGGAAAGTCGAATTAAGGAGGTTTATCACTCTCATTG ATAACTTCTATGATAATAAGGTTCGTCCAACTTATCATCTTTCTACCCTT GTCGCATATTAAATTGTATGTCTTCGAAAAAAGTTAAATATAGGTAATGT GTATTACTTAAAATGATATCCATATCACAATTATCAGGTGTTAGCTTTAT ATTTTCTGAAACTACTGAGTGCTTTGTGTCGAAGTGAAGTGAGTGAATAT TACTACGAAAAGTCTTTACCTTCGATTTCAGGTGCGGTTGATCCTTTCAG CAGCGCAACCGTTAGACAATCTGTTCATCACCAACGAAACTATGAACGAT TATGATGCAGAAGCAAAACGCATGTTAATGGACGACCTCGGTCTCATTGG TGTAAGTTTTTTCAAGCTTTTCAGCCCCATTCCTAAAACACGTATAGATC TTTGAGCCAAAAGCCATATAAAAGGATTGCATTGCATACTCACAGATACT CACATCTGACATCAGACAGCCCACACCTCTAGTGTGTTGGCATTATAAGT GTTATGTGGAAGGGATTAAAAAAGAAAGGTACAAAACAATTACGTACAGA CTGAAATCCAGCTTTTTGGACCTACCCCGGTGGGGTGGAGGTCCTATAAA TTAACCTGTGTTCGTTCGTTCGTTTGTTCGTTCGTCCGTTCGTCTGTTCG TCCGTTCGTCTGTTACCGACTTTTCTCAGGATTGAATCATAGGAATCTTT TGATTTTTGGTCCAAAGGTGAAAAATGGTGGTGGCCAAAATGTGCCAAAA TGTGCAAAATTTTGTTGGCTCAATTCTTTTTATGAGATAGATGTTTTTTT TGCTCATTAGGGCTTACTTTTGAAGAATATGTGTAATTAGACGTGAAATT TTGGTTGCTTGGCGTGTTTTTATAGAAAAACTGGCCAAATTCGATATTTT TTTATACGCACATTATCAATTACTTAGGTATTAGCTTTTCTCGAGATTGG CTCTTTCATTCTTTATGATTTTTTGCACAAAGATACGTAACTATAAGCCG GCTAAATGGGTTTTTTGGACTTTGTGAAAAATTGGATCATTAATTTTTTC TGATTTTTTGCTTGAAAGTAGGGTACCATCATAGGTAAAAGATGGCTCAA GCAGATCTTTGCAAAAAAAATTTGTTGGCCCAATTTTGGCTGCTTGGCGT GTTTTTATAGAAAAACTGGCCAGATTCGATACATAACTATAAGCCCTCGA ATGTGACGGAGCCCGATTTTCGAAAAAAAATGTTTTTGGGCAAATTTGGG CCAAAAAACAGCTAAAGAACGGGTTTTTTGGACTTTGTGAAATATTGGAT CATTGTTTTTTTTCTGATTTTTTGCATGAAAGTAGGTAAAAGATGGCTCA AGCAGATTTTTGTAAAAAACGAATTTTTCAGCTCAAAAAAACGCATCTTT ATCTATAAGAATCACTTTTAATAAGCATACATCAATGTTTTAGCCAAATT ACTCAATTTTTTGATGAGATAGATGTTTTTTTTGCTCACGAAGTCTTGAA TATGAAAGAATATTTCAAGAGCATGAAATTTTGTTTTCTAAACGTTTTTT TTATAAGAAACAAACGACTAATTTTAATAGATCGTCACTGTTTATGTTCT GAATGATTTTTTAATAGTCACGTCACGTAGATATCAATTATATATGTGTT AAATACAGGTAGGTCCATAAAAGTATCACTTGTTTGCTCTTTAGGGGAGT CGAAAGTCAACAAATATTGATTTTGAATTTCCACTTGGACACTGTAATTG AAAACCTTTCATGACTGGAACCTGCACTGGAAACACAAATTTGTTCGAGT TAAGGAGTTATGGTTCGAGTTAAATAGGCTTTCAACTGTAGTTGGAAATC TTTCATAACAAAGTCAAGATTACTCAATTTACTTTACAGACCCAAGATGA AGATCACAACATTAGCCTGTTTACCGCTGAAGAAGAAATTTTCGCCATCG AACGAACAGTATCCAGGCTAACTGAAATGCAAAGTGAACAATATTGGCAG GCTAGTGAAGATGAAAGTAACAATCAAAATTGAAAATGGTGTTGTATATG TATTTATCTAAATAGTTGTGCACTAGGATTGGTTTGTAATAGAACTTTTC ATAAACTAAGTCACGAGCAACGCTTACCTCGTTTTCAAAATATTGCTTTG GTAATTGATTCCCAGATGGGCAAAAGCAGTTGGCAGGTAAACAATACAGA GAATTGAAATAAAGATTTTTCTGGAAAATTTAGAGAGTTTATTTTCGTCG GAAAAAAAGTTCCCTGTGATAAGAGATCTAAGAAAAGATCGTTTTGAGTA TTTTCTTGCAATCACTAAGTTCTGACGGTAATTTCTGATCATGAAGATGA CATTTTCGATTGATATTGCTTGCGGTCTTCTCCCAATGCATTTCATGAAT GAAAGCTACTGAACTTAATACGTTCAAAAAGGAAGCTTCTATCTGTCCAT CTAGTAGGCAAAGGAAGGTAGGTCTTAAACGGATAGGTAATTTTTCTATG TCCTGTTTATGTAAAAGCTTTTACTGTTCAGATAAATACTTATGAAAATT GATAGTACATATTTTTACAATTTTATAATACAAGTTTTATTTTCTAGAAT GTATGCTAATTTCGTAATCAGCTATGACTCGAAAAAGATATCGTATAATT TATTTGCTGGATCGAAAAAATACGCCATCTTTTGTTTATTTACGGTATTT TTGCCCTGAGAAACAATGTGTGTATTTTACAGACCAGTAAGCATTGACAA ATACCATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011282XLOC_011282Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020074-exon-sc0000348-1575043694:287080..287193TCONS_00020074-exon-sc0000348-1575043694:287080..287193Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1575043694:286623..286868TCONS_00020074-exon-sc0000348-1575043694:286623..286868Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1575043694:285950..286185TCONS_00020074-exon-sc0000348-1575043694:285950..286185Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1575043694:284165..284264TCONS_00020074-exon-sc0000348-1575043694:284165..284264Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1575043694:283590..283648TCONS_00020074-exon-sc0000348-1575043694:283590..283648Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1575043694:283374..283422TCONS_00020074-exon-sc0000348-1575043694:283374..283422Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1575043694:282960..283061TCONS_00020074-exon-sc0000348-1575043694:282960..283061Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1575043694:282574..282674TCONS_00020074-exon-sc0000348-1575043694:282574..282674Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1575043694:282174..282314TCONS_00020074-exon-sc0000348-1575043694:282174..282314Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1575043694:281843..281962TCONS_00020074-exon-sc0000348-1575043694:281843..281962Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1575043694:279435..280304TCONS_00020074-exon-sc0000348-1575043694:279435..280304Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1510915933:287080..287193TCONS_00020074-exon-sc0000348-1510915933:287080..287193Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1510915933:286623..286868TCONS_00020074-exon-sc0000348-1510915933:286623..286868Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1510915933:285950..286185TCONS_00020074-exon-sc0000348-1510915933:285950..286185Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1510915933:284165..284264TCONS_00020074-exon-sc0000348-1510915933:284165..284264Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1510915933:283590..283648TCONS_00020074-exon-sc0000348-1510915933:283590..283648Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1510915933:283374..283422TCONS_00020074-exon-sc0000348-1510915933:283374..283422Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1510915933:282960..283061TCONS_00020074-exon-sc0000348-1510915933:282960..283061Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1510915933:282574..282674TCONS_00020074-exon-sc0000348-1510915933:282574..282674Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1510915933:282174..282314TCONS_00020074-exon-sc0000348-1510915933:282174..282314Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1510915933:281843..281962TCONS_00020074-exon-sc0000348-1510915933:281843..281962Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1510915933:279435..280304TCONS_00020074-exon-sc0000348-1510915933:279435..280304Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1491911889:287080..287193TCONS_00020074-exon-sc0000348-1491911889:287080..287193Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1491911889:286623..286868TCONS_00020074-exon-sc0000348-1491911889:286623..286868Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1491911889:285950..286185TCONS_00020074-exon-sc0000348-1491911889:285950..286185Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1491911889:284165..284264TCONS_00020074-exon-sc0000348-1491911889:284165..284264Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1491911889:283590..283648TCONS_00020074-exon-sc0000348-1491911889:283590..283648Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1491911889:283374..283422TCONS_00020074-exon-sc0000348-1491911889:283374..283422Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1491911889:282960..283061TCONS_00020074-exon-sc0000348-1491911889:282960..283061Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1491911889:282574..282674TCONS_00020074-exon-sc0000348-1491911889:282574..282674Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1491911889:282174..282314TCONS_00020074-exon-sc0000348-1491911889:282174..282314Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1491911889:281843..281962TCONS_00020074-exon-sc0000348-1491911889:281843..281962Clytia hemisphaericaexon
TCONS_00020074-exon-sc0000348-1491911889:279435..280304TCONS_00020074-exon-sc0000348-1491911889:279435..280304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:279435..287193 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.4274 14.7234 22.1044 18.6198 0.0161983 3.17532e-06 1.07111 0 15.0639 10.8003 7.76084 11.0853 5.5057 0.0806368 12.378 16.7305 21.5271 19.2268 8.15882 14.6039 23.3681 27.8994 25.2736 20.0253 8.85891e-05 8.25154e-08 19.4768 12.3509 18.4703 20.1961
Blast
BLAST of TCONS_00020074 vs. Swiss-Prot (Human)
Match: AFG1L (AFG1-like ATPase OS=Homo sapiens GN=AFG1L PE=1 SV=2)

HSP 1 Score: 418.698 bits (1075), Expect = 3.725e-138
Identity = 212/411 (51.58%), Postives = 283/411 (68.86%), Query Frame = 3
Query:  147 HGPEGTYKSLLENGLLKVDEEQQRVVYRLQKLYQDVRTYNKTSASNLFGKLFSFSSQSSNAPRGVYLYGSVGCGKTMLMDMLYKNVDIRPKKRVHFNQFMIDVHKRIHQFKLDAPPVDHRSRTSKPLDPIPPIAKDISDETWFLCFDEFQVTDVADAMILKRLFTCLFENGVIVIATSNRHPQDLYKNGLQRGNFLPFIPILERYCEIVPL-SGVDYRRLEFSDISKTYFNSQDASTKDKLEDVFKLLCENEKQDVKPKTVEVYGRNNVFQRACGKVAFTNFDELCRKALGAADYIAFAKTFDTIILTDVPVMSPRRKVELRRFITLIDNFYDNKVRLILSAAQPLDNLFITNETMNDYDAEAKRMLMDDLGLIGTQDEDHNISLFTAEEEIFAIERTVSRLTEMQSEQYW 1376
            HGP   Y  L++   LK DE Q+RV+  LQKL++D++ YN   A  LF KLFS     S  PRG+Y+YG VG GKTM+MDM Y  V+++ KKRVHF+ FM+DVHKRIH+ K  + P       +K  DPI PIA++IS+E   LCFDEFQVTD+ADAMILK+LF  LF+NGV+V+ATSNR P+DLYKNGLQR NF+PFI +L+ YC  V L SG+DYR+ E     K Y+ + +A  +  ++ +F  L + +    +P+ ++V GR     +ACG VA   F+ELC + LGA+DY+  +K FDTI L ++P  +   + + RRFITLIDNFYD KVR+I SA+ P+ +LF+     +D + E  R+LMDDLGL  +QD    +S+FT EEEIFA +RT+SRLTEMQ+EQYW
Sbjct:   73 HGPLDHYDFLIKAHELKDDEHQRRVIQCLQKLHEDLKGYN-IEAEGLFSKLFS----RSKPPRGLYVYGDVGTGKTMVMDMFYAYVEMKRKKRVHFHGFMLDVHKRIHRLK-QSLPKRKPGFMAKSYDPIAPIAEEISEEACLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCNTVQLDSGIDYRKRELPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSKNFDTIFLRNIPQFTLANRTQGRRFITLIDNFYDLKVRIICSASTPISSLFLHQH--HDSELEQSRILMDDLGL--SQDSAEGLSMFTGEEEIFAFQRTISRLTEMQTEQYW 473          
The following BLAST results are available for this feature:
BLAST of TCONS_00020074 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AFG1L3.725e-13851.58AFG1-like ATPase OS=Homo sapiens GN=AFG1L PE=1 SV=... [more]
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