TCONS_00020065 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020065
Unique NameTCONS_00020065
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020065 ID=TCONS_00020065|Name=TCONS_00020065|organism=Clytia hemisphaerica|type=transcript|length=1411bp
cccTTTAAATTTTAAAGCCATACTTTCAAAGTATTTCACTGAAGAATTCG
ATGAAGATGGACGTTTTTTTCTGAAGAAACAAAGTTTTTATCGCACGATG
GACGCTaaagCGACAAATATTCTTGAAGGAGAGGCCTCAGAATCTGATGA
TGAAGAAATTTCTCACAACACCTTTGTCAACAAACCTATTCCAAAAACCT
TTAACGAGTTTTCTAAGCCATCGAATGAGGGGCCAAGCAGTGGTGTTGTT
GTTTCTGGTGAAGCATCAGAGAGTGATGACGAAGATGACTCAACTGTAAA
CATGATGTTGACAAGAAATTTCCCAACACTTGTCTCACAGCAGGGCCTGA
AAGAATTCGAAATACAAGATGAGGAAGGCTCTGTTACTATTCAAGAACAG
AAACAAACTTTTGAATCgCCATTTCACAGAGGAATTTGTaagtattgtct
ttttgtttcgttttttttttctcatgtcTTTTCCGTGCCGATACTCACAG
CGATCCGCCAATGCAATACAGTGGATGTTGACCTTTAAAAACAACTTAAT
AAgctttagaatatttttaaaatattttaaaatatctttccaactatACC
AAACCTTTTATTATATATACCACAAATACTTGAAAGTTATGGTAAAAAAA
CACTGCACACCTTTTTGCTCGGGAGGGGGCACTTAgacaaattttataaa
aagaacgATGTCGATAGCtgaatgctatgggtgactttaacttcatTAAA
AAGAAGTATGgtatggttataactctgggtcaaaaatagattttaagatt
gcaattctatcaaaatgaaatccagtaagtTTTATTCCACTCTGGCTGAA
AAGAACTTCtgacaaaaaatggaaaaatttttcttatgtttttgCTGAAG
GTGaaccttatgtttttataaaatatgttTGTTGTTTCAGGGGAGAGGAA
TTTCGCCCTTCGACTTGGCATCGTGCGCCATAATGTGGAGGAATACCAGA
GTATTTTTAGtaaactcaaaaatgtcattccCCATGCAAACCGCGCTCAA
CAACATTCGCAGGAGACGCTGAAAGCTTATCGAACGATGGGAGAGAATAG
CAAACAAATAAACGATCAATTGGAAATGTTGTTACGTCAGACAGATATAC
CTCGGTTGAAAACTTCCTTCTCGTGATATACAGTGTATATGAGCCCCGTT
TTCTTCTGTTTTTTGAGAGGATTTCTTGTAGagaattttgtaaatttttc
ttattttttgtaatttataaTCTTGAATTTAATTGAGAAATAGATGAAGA
TTAAAGATAAAAGATACTCTCATTGGAATCTATTTTTTCTGAATACTCTT
TGAAATCAGCTGACATCGAATGCCTTTACAGTGTATCCCAAAATAAAAGG
Acaaattattt
Run BLAST on NCBI

transcript from alignment at sc0000348:194568..200264-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020065 ID=TCONS_00020065|Name=TCONS_00020065|organism=Clytia hemisphaerica|type=transcript|length=5697bp|location=Sequence derived from alignment at sc0000348:194568..200264- (Clytia hemisphaerica)
CCCTTTAAATTTTAAAGCCATACTTTCAAAGTATTTCACTGAAGAATTCG
ATGAAGATGGACGTTTTTTTCTGAAGAAACAAAGTTTTTATCGCACGATG
GACGCTAAAGGTTTTTTCTTTTTTTTCTTTTTCTATTTTTACTGAACTAT
TTATAATTAATGGAGAAATTTTTGAATTTCTCCTTTCTCTAATCATATCA
TATTCTACCATAGACTCCTTTTTTTATTTGGTATATAATCATTGGCTAGT
TCAAATGCAGGTTTCACAGTCCACTACAACAGAAGAGGTCACAGACACAT
GTCAACAGGTCACGGTATTTGACACAGGTCATCTTTAATTACTGTAAACT
ACAAAGGAAAATGTACTATGAAAAACACACCTTTAAACAGCCTCCTGGAC
ATAACCTGAGATTAGATCGTGATTGTTTTCTGCTGACCACGCTGAATAGG
ACCCTGCCGACGCACCGGACTGTCAGGTGTATTTGTCCGGTGGCAAAAAG
TATCCTTTCGCTACACCAGACGCAATAAGTCCGGTGTCAGTCCGGTGTTG
CATACAGGTAATTTTGGACACCGGACATTTATGAAACAAAAAATTAAGAA
ACACCGGATGCACCGGACTGGTCATGTCCAGTGTTTAGATTGTCCGGTGA
AAAAAAATATCCTTCTCCAACACCGGACATCCGACTGACGGAGAGTAATG
TATGTGGATTAATTTGTTATTCAATAGGCCGTTGCATTCTCCAAAACAAC
TATTTAGTTATCGACTTTCCAGTGCACAACAAGATTCTTGTTGTAGAATT
TTCCTTGGGAGGACTATTTTCAAGCACCTTTTAGAGGTTTACCATGCGCA
TTAGAAAATCATGAACAGTTGTTATCAGGTTACCTGGACAAGAAAATAGC
TGTTTCATAAGTGCTTTATCATATCCCATTACATCTCCTGCATCACCTTG
GGTATGATAACCGGACTTGATGAAAATAGCATCAAAAGGATTATATTTTA
TAGATATTTGTTTGTTTGACCTGTGTCCATGACCTTTGGCCTGCGTCTCG
AACTAGCCAGTATAACATTTGACTGCATAAATATAACAGTAAAGCATACT
AGATTATTGCTTCTAATCCAGCTGATTGAAGGTTCTGGAAGGTTGGGTAA
TTTTCCAAAATTTGAATACAAAAGCCAAATGGACCTCCTTTAATACAACC
CACAAAATGGCCTTACTATAGTCCTTGGTTTAGGGCCGAGTTTGGCCCAA
AATAGCAAAACATTCTTTTTGCCTAAAAACATTGATGTTCAGGCCAATTT
TGGACCATCATAATAGGTGCATCATAAGAAGACAATCAAAGTCCACACTG
TAACAGGCTGCTATTCAGCAATGAGGAACAATCAAAAGTGGTTCATGTCA
CTTAAAATAATAGGACTTGCCTTAACTCACCTGAGGTATCTATATTAGAT
CATAGTATTCTAAGAGTCGCAGTATGCTAAGTGGTGATGTGGTAGTATGT
TAAGAGCATTACAATTTTCTCAGTGACAAATATCTTTACAGTGTTTGATT
TAGATGTCTTTTTTATTTAGATGACATCCAGTCAATTATGTGCAGTAGAT
TCTTTTAAGAAATGATTTTACTTCAGTTTGTGTTATCATCAACATACATT
AGCATATGTTTTTAGCAAAGAAATTAACCCAGGTGGGAATATCGTTCACA
CTCCAAGGTATTGAATGATTTACTCACTTCTCATGTGTCATACCCTCCAA
CAAGTTCCCTAAAATATAGTTCTAAAGATCTTTCTCTTTCTTCAAACAGC
GACAAATATTCTTGAAGGAGAGGCCTCAGAATCTGATGATGAAGAAATTT
CTCACAACACCTTTGTCAACAAACCTATTCCAAAAACCTTTAACGAGTTT
TCTAAGGTAAATACTAAAGTACCATGAAAATGATATTTCTTTGAAATTTG
TAACTCTTTGCCTTGCTCAAATAACTTTGTCAATTAGTTTCCTGCAATAA
CAAGATGGTCAATATTTCCACATTAACAACCATAGCCATCGAATGAGGGG
CCAAGCAGTGGTGTTGTTGTTTCTGGTGAAGCATCAGAGAGTGATGACGA
AGATGACTCAACTGTAAACATGATGTTGACAAGAAATTTCCCAACACTTG
TCTCACAGCAGGGCCTGAAAGAATTCGAAATACAAGATGAGGAAGGCTCT
GTTACTATTCAAGAACAGAAACAAACTTTTGAATCGTAAGTGAGACACGG
CTTCAAAACTTCAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAAGATTACAAAGCAAACTCTCTGCGGCATGAAA
TTTTATGCTTTCTACACATTTGGTGACCTTATTCTCGCTAACTTTGAGCT
TGCTTAGAGCAAAAATTTACTCTGAAAAAACTTTCTCTGAAAGTTTCCCC
TAAAAAAGGTCAAAATTTTTCCAATCTCGCCCCCCCCCCGAAACGAAAAC
TCGTGGCTACGCCTCTGCTAGGCTTTACTCAATCCATCTCGATGAACAAT
GTCGCAAATTTTTCTTGATCGCTTCGCTCGCATTTTCGGGCGCCAGAATA
AGCCTACAAGCCAAAATTTTACTTACAGTTTTACACGCTACAGTTTGGTA
ATTGTTATAGAGAATTTTGGATGATGAAAAACGCGACCTTTATCGTCCAC
ACATACCAAGCACCCATTTTTGCCTAAGTACTCCCTCCGGGGGACGAGTA
CCTAAAAAATGGGGAAAAATTGATCGGTATCGGTATTTGAACGAAACAAT
TATCGGTATATCGGTAATTGAGAGAAAAAGTGATCGGTATATCGGTATTA
CGAAGTCCCGTACGCCCCCCACTTCAGAGTGATTTGTTCTATTGTTGAAA
TGTTGACACAATGTTGATATTTGAGAAAAATATTGATATCAAGACAAAAA
CATTCAAAATATTTATTATACCGAAAGTGATGTAGATAGTGTGAATGGAT
ATAAAAAGACACGAATCAGAAGCTTGTGACTTCTGTTTTAGATTGATGGC
ACATGAGGCCCGAGTTACATTGAAGAGTTACATTTAGGAGCGTTCCAGTT
GCTANTTTTGGAGTATTGAGATGAAATCAAAGTCATTTTCCCAGTGGTGC
TGAAATTCCAGGGTATGAAATTTTTGCCAAATTGTCCATTGGGGCTTGGG
TCCCAGTGGGTCTGTGACACAGGGGTGTTTGTATATACGACTTCTAAAAA
TCTTGTCTGTAATTTAATCTCACAAATCTTCTCCGTCATTTCTTTAAATT
TTTAGGCCATTTCACAGAGGAATTTGTAAGTATTGTCTTTTTGTTTCGTT
TTTTTTTTCTCATGTCTTTTCCGTGCCGATACTCACAGCGATCCGCCAAT
GCAATACAGTGGATGTTGACCTTTAAAAACAACTTAATAAGCTTTAGAAT
ATTTTTAAAATATTTTAAAATATCTTTCCAACTATACCAAACCTTTTATT
ATATATACCACAAATACTTGAAAGTTATGGTAAAAAAACACTGCACACCT
TTTTGCTCGGGAGGGGGCACTTAGACAAATTTTATAAAAAGAACGATGTC
GATAGCTGAATGCTATGGGTGACTTTAACTTCATTAAAAAGAAGTATGGT
ATGGTTATAACTCTGGGTCAAAAATAGATTTTAAGATTGCAATTCTATCA
AAATGAAATCCAGTAAGTTTTATTCCACTCTGGCTGAAAAGAACTTCTGA
CAAAAAATGGAAAAATTTTTCTTATGTTTTTGCTGAAGGTGAACCTTATG
TTTTTATAAAATATGTTTGTTGTTTCAGGGGAGAGGAATTTCGCCCTTCG
ACTTGGCATCGTGCGCCATAATGTGGAGGAATACCAGAGTATTTTTAGTA
AACTCAAAAATGTCATTCCCCATGCAAACCGCGCTCAACAACATTCGCAG
GTAAGTAAGTTAGAGATTAATCGCTGTTGTCTCAAAACAATCACATAGTC
ATTATTTTCATGTTCTTAGCTTAATATAATGGGGTAAAATTCTGAGAAGA
TTCATTTTTGCAATTTTCTCCGATTTTGGCTTTCTTCACAAAATCCGAAT
TCAAATGGAATTTTGAAAAACACTTTCACGTCTTGCAGCCTCATTTTGTT
TAGGTAAATTCATTTTTGAGCCTCAAATATGCTTACTCTCAGGTACCTAA
TAACCGTCCCCCCGCTAATTAATTTTTCGAAAATTTTCCACCCAAGACAT
TGTTGCTCCAACCCCTCCCCCTCCCCGCTTATTAATTTTTGGGAAAATGT
TTTTGAAAGTTCCCTCTTTCGTCCTAGTTCTGCTGTATTAGCCTCCTTTT
CAAAAATTTTTCACCCAGGACATTTTTATTCCAACCCCCCTGCTATTAGG
CACCCGAGAGTACGCAACGACGTAATTATTACATGTCAACATAAAGTTTC
TTCTGGAAAAACAAATTATACTGAAATGCAAATTTTTAACGAATTCAGGA
GACGCTGAAAGCTTATCGAACGATGGGAGAGAATAGCAAACAAATAAACG
ATCAATTGGAAATGTTGTTACGTCAGACAGATATACCTCGGTTGAAAACT
TCCTTCTCGTGATATACAGTGTATATGAGCCCCGTTTTCTTCTGTTTTTT
GAGAGGATTTCTTGTAGAGAATTTTGTAAATTTTTCTTATTTTTTGTAAT
TTATAATCTTGAATTTAATTGAGAAATAGATGAAGATTAAAGATAAAAGA
TACTCTCATTGGAATCTATTTTTTCTGAATACTCTTTGAAATCAGCTGAC
ATCGAATGCCTTTACAGTGTATCCCAAAATAAAAGGACAAATTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011280XLOC_011280Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020065-exon-sc0000348-1575043694:200155..200264TCONS_00020065-exon-sc0000348-1575043694:200155..200264Clytia hemisphaericaexon
TCONS_00020065-exon-sc0000348-1575043694:198359..198465TCONS_00020065-exon-sc0000348-1575043694:198359..198465Clytia hemisphaericaexon
TCONS_00020065-exon-sc0000348-1575043694:198030..198229TCONS_00020065-exon-sc0000348-1575043694:198030..198229Clytia hemisphaericaexon
TCONS_00020065-exon-sc0000348-1575043694:195465..196109TCONS_00020065-exon-sc0000348-1575043694:195465..196109Clytia hemisphaericaexon
TCONS_00020065-exon-sc0000348-1575043694:194568..194916TCONS_00020065-exon-sc0000348-1575043694:194568..194916Clytia hemisphaericaexon
TCONS_00020065-exon-sc0000348-1510915933:200155..200264TCONS_00020065-exon-sc0000348-1510915933:200155..200264Clytia hemisphaericaexon
TCONS_00020065-exon-sc0000348-1510915933:198359..198465TCONS_00020065-exon-sc0000348-1510915933:198359..198465Clytia hemisphaericaexon
TCONS_00020065-exon-sc0000348-1510915933:198030..198229TCONS_00020065-exon-sc0000348-1510915933:198030..198229Clytia hemisphaericaexon
TCONS_00020065-exon-sc0000348-1510915933:195465..196109TCONS_00020065-exon-sc0000348-1510915933:195465..196109Clytia hemisphaericaexon
TCONS_00020065-exon-sc0000348-1510915933:194568..194916TCONS_00020065-exon-sc0000348-1510915933:194568..194916Clytia hemisphaericaexon
TCONS_00020065-exon-sc0000348-1491911889:200155..200264TCONS_00020065-exon-sc0000348-1491911889:200155..200264Clytia hemisphaericaexon
TCONS_00020065-exon-sc0000348-1491911889:198359..198465TCONS_00020065-exon-sc0000348-1491911889:198359..198465Clytia hemisphaericaexon
TCONS_00020065-exon-sc0000348-1491911889:198030..198229TCONS_00020065-exon-sc0000348-1491911889:198030..198229Clytia hemisphaericaexon
TCONS_00020065-exon-sc0000348-1491911889:195465..196109TCONS_00020065-exon-sc0000348-1491911889:195465..196109Clytia hemisphaericaexon
TCONS_00020065-exon-sc0000348-1491911889:194568..194916TCONS_00020065-exon-sc0000348-1491911889:194568..194916Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:194568..200264 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.3743	37.7258	0.377634	0	0.115222	0	1.16776	2.75855	6.04208	3.65996	4.64797	5.19921	6.33779	7.48205	3.73257	6.80625	9.681	5.96189	4.59871	3.76451	5.16487	4.09847	0.690795	0.513182	2.49932	1.84946	3.60081	2.72107	1.76054	0.800382
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020065 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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