TCONS_00020064 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020064
Unique NameTCONS_00020064
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length756

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020064 ID=TCONS_00020064|Name=TCONS_00020064|organism=Clytia hemisphaerica|type=transcript|length=756bp
ATTCGATGAAGATGGACGTTTTTTTCTGAAGAAACAAAGTTTTTATCGCA
CGATGGACGCTaaagCCATCGAATGAGGGGCCAAGCAGTGGTGTTGTTGT
TTCTGGTGAAGCATCAGAGAGTGATGACGAAGATGACTCAACTGTAAACA
TGATGTTGACAAGAAATTTCCCAACACTTGTCTCACAGCAGGGCCTGAAA
GAATTCGAAATACAAGATGAGGAAGGCTCTGTTACTATTCAAGAACAGAA
ACAAACTTTTGAATCgCCATTTCACAGAGGAATTTGGGAGAGGAATTTCG
CCCTTCGACTTGGCATCGTGCGCCATAATGTGGAGGAATACCAGAGTATT
TTTAGtaaactcaaaaatgtcattccCCATGCAAACCGCGCTCAACAACA
TTCGCAGGAGACGCTGAAAGCTTATCGAACGATGGGAGAGAATAGCAAAC
AAATAAACGATCAATTGGAAATGTTGTTACGTCAGACAGATATACCTCGG
TTGAAAACTTCCTTCTCGTGATATACAGTGTATATGAGCCCCGTTTTCTT
CTGTTTTTTGAGAGGATTTCTTGTAGagaattttgtaaatttttcttatt
ttttgtaatttataaTCTTGAATTTAATTGAGAAATAGATGAAGATTAAA
GATAAAAGATACTCTCATTGGAATCTATTTTTTCTGAATACTCTTTGAAA
TCAGCTGACATCGAATGCCTTTACAGTGTATCCCAAAATAAAAGGAcaaa
ttattt
Run BLAST on NCBI

transcript from alignment at sc0000348:194568..200219-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020064 ID=TCONS_00020064|Name=TCONS_00020064|organism=Clytia hemisphaerica|type=transcript|length=5652bp|location=Sequence derived from alignment at sc0000348:194568..200219- (Clytia hemisphaerica)
ATTCGATGAAGATGGACGTTTTTTTCTGAAGAAACAAAGTTTTTATCGCA
CGATGGACGCTAAAGGTTTTTTCTTTTTTTTCTTTTTCTATTTTTACTGA
ACTATTTATAATTAATGGAGAAATTTTTGAATTTCTCCTTTCTCTAATCA
TATCATATTCTACCATAGACTCCTTTTTTTATTTGGTATATAATCATTGG
CTAGTTCAAATGCAGGTTTCACAGTCCACTACAACAGAAGAGGTCACAGA
CACATGTCAACAGGTCACGGTATTTGACACAGGTCATCTTTAATTACTGT
AAACTACAAAGGAAAATGTACTATGAAAAACACACCTTTAAACAGCCTCC
TGGACATAACCTGAGATTAGATCGTGATTGTTTTCTGCTGACCACGCTGA
ATAGGACCCTGCCGACGCACCGGACTGTCAGGTGTATTTGTCCGGTGGCA
AAAAGTATCCTTTCGCTACACCAGACGCAATAAGTCCGGTGTCAGTCCGG
TGTTGCATACAGGTAATTTTGGACACCGGACATTTATGAAACAAAAAATT
AAGAAACACCGGATGCACCGGACTGGTCATGTCCAGTGTTTAGATTGTCC
GGTGAAAAAAAATATCCTTCTCCAACACCGGACATCCGACTGACGGAGAG
TAATGTATGTGGATTAATTTGTTATTCAATAGGCCGTTGCATTCTCCAAA
ACAACTATTTAGTTATCGACTTTCCAGTGCACAACAAGATTCTTGTTGTA
GAATTTTCCTTGGGAGGACTATTTTCAAGCACCTTTTAGAGGTTTACCAT
GCGCATTAGAAAATCATGAACAGTTGTTATCAGGTTACCTGGACAAGAAA
ATAGCTGTTTCATAAGTGCTTTATCATATCCCATTACATCTCCTGCATCA
CCTTGGGTATGATAACCGGACTTGATGAAAATAGCATCAAAAGGATTATA
TTTTATAGATATTTGTTTGTTTGACCTGTGTCCATGACCTTTGGCCTGCG
TCTCGAACTAGCCAGTATAACATTTGACTGCATAAATATAACAGTAAAGC
ATACTAGATTATTGCTTCTAATCCAGCTGATTGAAGGTTCTGGAAGGTTG
GGTAATTTTCCAAAATTTGAATACAAAAGCCAAATGGACCTCCTTTAATA
CAACCCACAAAATGGCCTTACTATAGTCCTTGGTTTAGGGCCGAGTTTGG
CCCAAAATAGCAAAACATTCTTTTTGCCTAAAAACATTGATGTTCAGGCC
AATTTTGGACCATCATAATAGGTGCATCATAAGAAGACAATCAAAGTCCA
CACTGTAACAGGCTGCTATTCAGCAATGAGGAACAATCAAAAGTGGTTCA
TGTCACTTAAAATAATAGGACTTGCCTTAACTCACCTGAGGTATCTATAT
TAGATCATAGTATTCTAAGAGTCGCAGTATGCTAAGTGGTGATGTGGTAG
TATGTTAAGAGCATTACAATTTTCTCAGTGACAAATATCTTTACAGTGTT
TGATTTAGATGTCTTTTTTATTTAGATGACATCCAGTCAATTATGTGCAG
TAGATTCTTTTAAGAAATGATTTTACTTCAGTTTGTGTTATCATCAACAT
ACATTAGCATATGTTTTTAGCAAAGAAATTAACCCAGGTGGGAATATCGT
TCACACTCCAAGGTATTGAATGATTTACTCACTTCTCATGTGTCATACCC
TCCAACAAGTTCCCTAAAATATAGTTCTAAAGATCTTTCTCTTTCTTCAA
ACAGCGACAAATATTCTTGAAGGAGAGGCCTCAGAATCTGATGATGAAGA
AATTTCTCACAACACCTTTGTCAACAAACCTATTCCAAAAACCTTTAACG
AGTTTTCTAAGGTAAATACTAAAGTACCATGAAAATGATATTTCTTTGAA
ATTTGTAACTCTTTGCCTTGCTCAAATAACTTTGTCAATTAGTTTCCTGC
AATAACAAGATGGTCAATATTTCCACATTAACAACCATAGCCATCGAATG
AGGGGCCAAGCAGTGGTGTTGTTGTTTCTGGTGAAGCATCAGAGAGTGAT
GACGAAGATGACTCAACTGTAAACATGATGTTGACAAGAAATTTCCCAAC
ACTTGTCTCACAGCAGGGCCTGAAAGAATTCGAAATACAAGATGAGGAAG
GCTCTGTTACTATTCAAGAACAGAAACAAACTTTTGAATCGTAAGTGAGA
CACGGCTTCAAAACTTCAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAAGATTACAAAGCAAACTCTCTGCGGCA
TGAAATTTTATGCTTTCTACACATTTGGTGACCTTATTCTCGCTAACTTT
GAGCTTGCTTAGAGCAAAAATTTACTCTGAAAAAACTTTCTCTGAAAGTT
TCCCCTAAAAAAGGTCAAAATTTTTCCAATCTCGCCCCCCCCCCGAAACG
AAAACTCGTGGCTACGCCTCTGCTAGGCTTTACTCAATCCATCTCGATGA
ACAATGTCGCAAATTTTTCTTGATCGCTTCGCTCGCATTTTCGGGCGCCA
GAATAAGCCTACAAGCCAAAATTTTACTTACAGTTTTACACGCTACAGTT
TGGTAATTGTTATAGAGAATTTTGGATGATGAAAAACGCGACCTTTATCG
TCCACACATACCAAGCACCCATTTTTGCCTAAGTACTCCCTCCGGGGGAC
GAGTACCTAAAAAATGGGGAAAAATTGATCGGTATCGGTATTTGAACGAA
ACAATTATCGGTATATCGGTAATTGAGAGAAAAAGTGATCGGTATATCGG
TATTACGAAGTCCCGTACGCCCCCCACTTCAGAGTGATTTGTTCTATTGT
TGAAATGTTGACACAATGTTGATATTTGAGAAAAATATTGATATCAAGAC
AAAAACATTCAAAATATTTATTATACCGAAAGTGATGTAGATAGTGTGAA
TGGATATAAAAAGACACGAATCAGAAGCTTGTGACTTCTGTTTTAGATTG
ATGGCACATGAGGCCCGAGTTACATTGAAGAGTTACATTTAGGAGCGTTC
CAGTTGCTANTTTTGGAGTATTGAGATGAAATCAAAGTCATTTTCCCAGT
GGTGCTGAAATTCCAGGGTATGAAATTTTTGCCAAATTGTCCATTGGGGC
TTGGGTCCCAGTGGGTCTGTGACACAGGGGTGTTTGTATATACGACTTCT
AAAAATCTTGTCTGTAATTTAATCTCACAAATCTTCTCCGTCATTTCTTT
AAATTTTTAGGCCATTTCACAGAGGAATTTGTAAGTATTGTCTTTTTGTT
TCGTTTTTTTTTTCTCATGTCTTTTCCGTGCCGATACTCACAGCGATCCG
CCAATGCAATACAGTGGATGTTGACCTTTAAAAACAACTTAATAAGCTTT
AGAATATTTTTAAAATATTTTAAAATATCTTTCCAACTATACCAAACCTT
TTATTATATATACCACAAATACTTGAAAGTTATGGTAAAAAAACACTGCA
CACCTTTTTGCTCGGGAGGGGGCACTTAGACAAATTTTATAAAAAGAACG
ATGTCGATAGCTGAATGCTATGGGTGACTTTAACTTCATTAAAAAGAAGT
ATGGTATGGTTATAACTCTGGGTCAAAAATAGATTTTAAGATTGCAATTC
TATCAAAATGAAATCCAGTAAGTTTTATTCCACTCTGGCTGAAAAGAACT
TCTGACAAAAAATGGAAAAATTTTTCTTATGTTTTTGCTGAAGGTGAACC
TTATGTTTTTATAAAATATGTTTGTTGTTTCAGGGGAGAGGAATTTCGCC
CTTCGACTTGGCATCGTGCGCCATAATGTGGAGGAATACCAGAGTATTTT
TAGTAAACTCAAAAATGTCATTCCCCATGCAAACCGCGCTCAACAACATT
CGCAGGTAAGTAAGTTAGAGATTAATCGCTGTTGTCTCAAAACAATCACA
TAGTCATTATTTTCATGTTCTTAGCTTAATATAATGGGGTAAAATTCTGA
GAAGATTCATTTTTGCAATTTTCTCCGATTTTGGCTTTCTTCACAAAATC
CGAATTCAAATGGAATTTTGAAAAACACTTTCACGTCTTGCAGCCTCATT
TTGTTTAGGTAAATTCATTTTTGAGCCTCAAATATGCTTACTCTCAGGTA
CCTAATAACCGTCCCCCCGCTAATTAATTTTTCGAAAATTTTCCACCCAA
GACATTGTTGCTCCAACCCCTCCCCCTCCCCGCTTATTAATTTTTGGGAA
AATGTTTTTGAAAGTTCCCTCTTTCGTCCTAGTTCTGCTGTATTAGCCTC
CTTTTCAAAAATTTTTCACCCAGGACATTTTTATTCCAACCCCCCTGCTA
TTAGGCACCCGAGAGTACGCAACGACGTAATTATTACATGTCAACATAAA
GTTTCTTCTGGAAAAACAAATTATACTGAAATGCAAATTTTTAACGAATT
CAGGAGACGCTGAAAGCTTATCGAACGATGGGAGAGAATAGCAAACAAAT
AAACGATCAATTGGAAATGTTGTTACGTCAGACAGATATACCTCGGTTGA
AAACTTCCTTCTCGTGATATACAGTGTATATGAGCCCCGTTTTCTTCTGT
TTTTTGAGAGGATTTCTTGTAGAGAATTTTGTAAATTTTTCTTATTTTTT
GTAATTTATAATCTTGAATTTAATTGAGAAATAGATGAAGATTAAAGATA
AAAGATACTCTCATTGGAATCTATTTTTTCTGAATACTCTTTGAAATCAG
CTGACATCGAATGCCTTTACAGTGTATCCCAAAATAAAAGGACAAATTAT
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011280XLOC_011280Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020064-exon-sc0000348-1575043694:200155..200219TCONS_00020064-exon-sc0000348-1575043694:200155..200219Clytia hemisphaericaexon
TCONS_00020064-exon-sc0000348-1575043694:198030..198229TCONS_00020064-exon-sc0000348-1575043694:198030..198229Clytia hemisphaericaexon
TCONS_00020064-exon-sc0000348-1575043694:196090..196109TCONS_00020064-exon-sc0000348-1575043694:196090..196109Clytia hemisphaericaexon
TCONS_00020064-exon-sc0000348-1575043694:195465..195586TCONS_00020064-exon-sc0000348-1575043694:195465..195586Clytia hemisphaericaexon
TCONS_00020064-exon-sc0000348-1575043694:194568..194916TCONS_00020064-exon-sc0000348-1575043694:194568..194916Clytia hemisphaericaexon
TCONS_00020064-exon-sc0000348-1510915933:200155..200219TCONS_00020064-exon-sc0000348-1510915933:200155..200219Clytia hemisphaericaexon
TCONS_00020064-exon-sc0000348-1510915933:198030..198229TCONS_00020064-exon-sc0000348-1510915933:198030..198229Clytia hemisphaericaexon
TCONS_00020064-exon-sc0000348-1510915933:196090..196109TCONS_00020064-exon-sc0000348-1510915933:196090..196109Clytia hemisphaericaexon
TCONS_00020064-exon-sc0000348-1510915933:195465..195586TCONS_00020064-exon-sc0000348-1510915933:195465..195586Clytia hemisphaericaexon
TCONS_00020064-exon-sc0000348-1510915933:194568..194916TCONS_00020064-exon-sc0000348-1510915933:194568..194916Clytia hemisphaericaexon
TCONS_00020064-exon-sc0000348-1491911889:200155..200219TCONS_00020064-exon-sc0000348-1491911889:200155..200219Clytia hemisphaericaexon
TCONS_00020064-exon-sc0000348-1491911889:198030..198229TCONS_00020064-exon-sc0000348-1491911889:198030..198229Clytia hemisphaericaexon
TCONS_00020064-exon-sc0000348-1491911889:196090..196109TCONS_00020064-exon-sc0000348-1491911889:196090..196109Clytia hemisphaericaexon
TCONS_00020064-exon-sc0000348-1491911889:195465..195586TCONS_00020064-exon-sc0000348-1491911889:195465..195586Clytia hemisphaericaexon
TCONS_00020064-exon-sc0000348-1491911889:194568..194916TCONS_00020064-exon-sc0000348-1491911889:194568..194916Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:194568..200219 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
178.486	179.674	53.2996	36.757	0.377343	0.614956	15.8987	12.7903	29.6237	20.8753	19.3148	24.2041	21.1282	18.5711	27.0786	24.9136	31.6569	32.225	18.3233	16.3763	28.0656	26.8744	67.6681	59.2516	15.5892	19.0024	21.1994	16.9103	34.7493	32.0961
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020064 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top