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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020057 ID=TCONS_00020057|Name=TCONS_00020057|organism=Clytia hemisphaerica|type=transcript|length=4047bpRun BLAST on NCBI protein sequence of TCONS_00020057-protein >TCONS_00020057-protein ID=TCONS_00020057-protein|Name=TCONS_00020057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1247bp MHRPLRHPGMPKNMTTATPTGSSHSTFTEDDIQMTVLALRTLGTFDFEPHRun BLAST on NCBI transcript from alignment at sc0000348:19519..66591- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020057 ID=TCONS_00020057|Name=TCONS_00020057|organism=Clytia hemisphaerica|type=transcript|length=47073bp|location=Sequence derived from alignment at sc0000348:19519..66591- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000348:19519..66591- >TCONS_00020057 ID=TCONS_00020057|Name=TCONS_00020057|organism=Clytia hemisphaerica|type=CDS|length=115971bp|location=Sequence derived from alignment at sc0000348:19519..66591- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020057 vs. Swiss-Prot (Human)
Match: MTOR (Serine/threonine-protein kinase mTOR OS=Homo sapiens GN=MTOR PE=1 SV=1) HSP 1 Score: 1513.43 bits (3917), Expect = 0.000e+0 Identity = 779/1289 (60.43%), Postives = 991/1289 (76.88%), Query Frame = 3
Query: 201 FSPALTASLRDLAKIIPKTKKDIQDGLLNILSQILMHRPLRHPGMPKNMTTATPTGSSHSTFTEDDIQMTVLALRTLGTFDFEPHTLTRFISHCADNFLSSEHKEIRMEAVRTCSCLLTPAHHPMVIPSTQVNLPISSNSTQVVSEVLSKMLNVGIIDPDPDIRFCVLISLDERFDSHLSQAENLQALFVALNDEEFDIRERALCTIGRLSAFNPAYIMPSLRKTLIQILTELEYSGVGRNKEQGAKMLAHLVYNAPKLIKPYMEPILKALVPKLKDQDP--NPGVVTSVLAAIGELAQVSGLEMRKYIDELFLVIIDMLQDASSLAKREVALWTLGQLVESTGYVVEPYKKYPNLLEVLLNFLKTEQSPGIRREAIRVLGLLGALDPYKYKEIALGNKEXXXXXXXSEPVNSNDQVNETETSTSEMLVNMGSTNIEEFYPAVAISALMRIMRDPALSNHHTTVIQAIQFIYSSSLGMKGVQYLPQLMPSYMNVIRTCEPTFRDFMLQMLGKLISVVKQHIRNYLDEIFDLIKEYWVHTSPSSLQNTIIDLIEQLAIALSGEFKVYLPQILPHMLRLLINDRSENRVVTCKLLSGIQKFGQSFDDYLHLLIPRVVKLFDSKDSPREVRQAALETLTKLCDSVDLREYAACIIHPLIRVIDTAPELRGNAMNTLTAIVTQMGKSFTVFIPAVFKVITKHRISHQRYDCIVNRIQKGGVTLDYDNDPAQRRAKAVRANVQDD-QSGAAGDG-VRKIGVSASTLQKAWQVLRRVSKDDWTEWLRRLSVELLKESPSPVLRSCQVLAQEYNPLARDLFNVAFVSCWXXXXXXXXXXXXXXXXXALKSXXXXXXXXXXXXXSEFMEHCEIKGTFSL----SIALLGECASKCSAYAKALHYKEEEFKQGVTTEVLESLISINNKLQNPEAANGVLMYAKRNSKVDYKVQQRWYEKLHEWENALNAYDKKHATHPDDHEILLGRMRCLEALGKWGELHNLACEKWSAVSDDVRHKMARTAASAAWGLGEWLGMEEYTIMIQRDTFEGAFFRAVLQIHKNQFVRAQSCIDNARDMLDTELTAMVGESYNRAYNAMVNVQMLSELEEVIQYKLVSERREAIKSAWWNRLQGCQANVEEWHRILQVHSLVLTPQEDMKTWLKYASLCRKSGQLGLSQQTLVTLLEADPYLNQDKPIPSTYPMVTFAFMKHMWKSGQRQEAFKHLQYFVRTTLLPQVLPPGDLDDESEKKRNETISLLAKCHMKLGEWMTITEGVNSNTIPHILQYHATATKYADKSYK 4043
SPALTA L DL++ IP+ KKDIQDGLL +LS +LMH+PLRHPGMPK + + + D+ LALRTLG+F+FE H+LT+F+ HCAD+FL+SEHKEIRMEA RTCS LLTP+ H ++ V +S + QVV++VLSK+L VGI DPDPDIR+CVL SLDERFD+HL+QAENLQALFVALND+ F+IRE A+CT+GRLS+ NPA++MP LRK LIQILTELE+SG+GR KEQ A+ML HLV NAP+LI+PYMEPILKAL+ KLKD DP NPGV+ +VLA IGELAQVSGLEMRK++DELF++I+DMLQD+S LAKR+VALWTLGQLV STGYVVEPY+KYP LLEVLLNFLKTEQ+ G RREAIRVLGLLGALDPYK+K + +G + A+A S + ++ STSEMLVNMG+ ++EFYPAV++ ALMRI RD +LS+HHT V+QAI FI+ S LG+K VQ+LPQ+MP+++NVIR C+ R+F+ Q LG L+S VK HIR Y+DEI L++E+WV + S+Q+TII LIEQ+ +AL GEFK+YLPQ++PHMLR+ ++D S R+V+ KLL+ IQ FG + DDYLHLL+P +VKLFD+ ++P R+AALET+ +L +S+D +YA+ IIHP++R +D +PELR AM+TL+++V Q+GK + +FIP V KV+ +HRI+HQRYD ++ RI KG D + DP + + +R+ D SG G ++K+ VS LQKAW RRVSKDDW EWLRRLS+ELLK+S SP LRSC LAQ YNP+ARDLFN AFVSCWSEL E+QQDEL++S+E AL SQ+I ++TQ LLNL+EFMEH + KG L I LLGE A+KC AYAKALHYKE EF++G T +LESLISINNKLQ PEAA GVL YA ++ + ++Q WYEKLHEWE+AL AYDKK T+ DD E++LGRMRCLEALG+WG+LH CEKW+ V+D+ + KMAR AA+AAWGLG+W MEEYT MI RDT +GAF+RAVL +H++ F AQ CID ARD+LD ELTAM GESY+RAY AMV+ MLSELEEVIQYKLV ERRE I+ WW RLQGCQ VE+W +IL V SLV++P EDM+TWLKYASLC KSG+L L+ +TLV LL DP D P+P+ +P VT+A+MK+MWKS ++ +AF+H+Q+FV+T Q + E ++ + E L+A+C +KLGEW +G+N +TIP +LQY++ AT++ YK
Sbjct: 513 LSPALTAVLYDLSRQIPQLKKDIQDGLLKMLSLVLMHKPLRHPGMPKGLAHQLASPGLTTLPEASDVGSITLALRTLGSFEFEGHSLTQFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSIH-LISGHAHV---VSQTAVQVVADVLSKLLVVGITDPDPDIRYCVLASLDERFDAHLAQAENLQALFVALNDQVFEIRELAICTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGIGRIKEQSARMLGHLVSNAPRLIRPYMEPILKALILKLKDPDPDPNPGVINNVLATIGELAQVSGLEMRKWVDELFIIIMDMLQDSSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIRVLGLLGALDPYKHK-VNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLDEFYPAVSMVALMRIFRDQSLSHHHTMVVQAITFIFKS-LGLKCVQFLPQVMPTFLNVIRVCDGAIREFLFQQLGMLVSFVKSHIRPYMDEIVTLMREFWVMNT--SIQSTIILLIEQIVVALGGEFKLYLPQLIPHMLRVFMHDNSPGRIVSIKLLAAIQLFGANLDDYLHLLLPPIVKLFDAPEAPLPSRKAALETVDRLTESLDFTDYASRIIHPIVRTLDQSPELRSTAMDTLSSLVFQLGKKYQIFIPMVNKVLVRHRINHQRYDVLICRIVKGYTLADEEEDPLIYQHRMLRSGQGDALASGPVETGPMKKLHVSTINLQKAWGAARRVSKDDWLEWLRRLSLELLKDSSSPSLRSCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELIRSIELALTSQDIAEVTQTLLNLAEFMEHSD-KGPLPLRDDNGIVLLGERAAKCRAYAKALHYKELEFQKGPTPAILESLISINNKLQQPEAAAGVLEYAMKHFG-ELEIQATWYEKLHEWEDALVAYDKKMDTNKDDPELMLGRMRCLEALGEWGQLHQQCCEKWTLVNDETQAKMARMAAAAAWGLGQWDSMEEYTCMIPRDTHDGAFYRAVLALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRAYGAMVSCHMLSELEEVIQYKLVPERREIIRQIWWERLQGCQRIVEDWQKILMVRSLVVSPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVDPSRQLDHPLPTVHPQVTYAYMKNMWKSARKIDAFQHMQHFVQTM---QQQAQHAIATEDQQHKQELHKLMARCFLKLGEWQLNLQGINESTIPKVLQYYSAATEHDRSWYK 1788 The following BLAST results are available for this feature:
BLAST of TCONS_00020057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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