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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020055 ID=TCONS_00020055|Name=TCONS_00020055|organism=Clytia hemisphaerica|type=transcript|length=756bp
atttaatttcgcgattttgtaattttgaaaaatttaaacagtattaaatt
tcgcgaaaattgaccaaaaaactcgcgaaattacgTACCCGctaaaattt
gtaacacgcgaaaatatataccaataagccATATGAGTGAAAGATGTTCA
CTTCGCGTGAGCAAGATGTCAGGCGTACAAATGACCATAAGATGTGACAC
GATTAAAAGTGCACTTAAAAACTTCATAGTGCCTATCGTTGTTGATAGAT
ACTTTGTTATATCATTTCGTTGTCTATGGGATGTTTTTGATGAAGACCTT
GAAAAAGCCAACTACAACCTTGAAAATAAAAGAGAAGAGATTGAAACCAT
AATAAAGCGTTTTGATGAAGTGATGCTTTACTTTTCCTGTCTTTGTGGCA
TGAAAGTGAGCGACATGAGACACAAACTAATCAAACGAAAAAGGCAAGAA
GAAGAGAGAAGAGAAGCACCGTTAGATTCGGATGAGGATTATCAAAGTTA
CGAAATAGACGGGGAGAAAACCGTCATACCAGGGATTTCATATTGGATAG
CGATATCTTCAACACGAGGTGGTGCAAATAAAATCGAAGCGGAAATATGT
AAACGAATTATGTTGGCTGGCTTGAATGTTAGTGATTGCAAAGAAATCAT
TGTCAGAGGTAAAAATTATTGTATATTAAAAGGGGCGGCTTCAAGTTTTG
TGAATCGGTACGGcatcttttgtaattttgtttttaagttgAGAAGCCAA
Cctcat Run BLAST on NCBI protein sequence of TCONS_00020055-protein >TCONS_00020055-protein ID=TCONS_00020055-protein|Name=TCONS_00020055-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MSERCSLRVSKMSGVQMTIRCDTIKSALKNFIVPIVVDRYFVISFRCLWD
VFDEDLEKANYNLENKREEIETIIKRFDEVMLYFSCLCGMKVSDMRHKLI
KRKRQEEERREAPLDSDEDYQSYEIDGEKTVIPGISYWIAISSTRGGANK
IEAEICKRIMLAGLNVSDCKEIIVRGKNYCILKGAASSFVNRYGIFCNFV
FKLRSQPH Run BLAST on NCBI transcript from alignment at sc0000348:326392..327320+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020055 ID=TCONS_00020055|Name=TCONS_00020055|organism=Clytia hemisphaerica|type=transcript|length=929bp|location=Sequence derived from alignment at sc0000348:326392..327320+ (Clytia hemisphaerica)
atttaatttcgcgattttgtaattttgaaaaatttaaacagtattaaatt
tcgcgaaaattgaccaaaaaactcgcgaaattacgTACCCGctaaaattt
gtaacacgcgaaaatatataccaataagccATATGAGTGAAAGATGTTCA
CTTCGCGTGAGCAAGATGTCAGGCGTACAAATGACCATAAGATGTGACAC
GATTAAAAGTGCACTTAAAAACTTCATAGTGCCTATCGTTGTTGATAGAT
ACTTTGTTATATCATTTCGTTGTCTATGGGATGTTTTTGATGAAGACCTT
GAAAAAGCCAACTACAACCTTGAAAATAAAAGAGAAGAGATTGAAACCAT
AATAAAGCGTTTTGATGAAGTGATGCTTTACTTTTCCTGTCTTTGTGGCA
TGAAAGTGAGCGACATGAGACACAAACTAATCAAACGAAAAAGGCAAGAA
GAAGAGAGAAGAGAAGCACCGTTAGATTCGGATGAGGATTATCAAAGTTA
CGAAATAGACGGGGAGAAAACCGTCATACCAGGTAAAAATTAATTgcata
atttgatttttaatcgacgatattttcaaaaattgatcaTGATTATGgcc
aaacttaatttttttccccactagtctctatttctcttacaaaatttctt
ctcttaaggtattaAAACTTTGTTCTTTTGTTAATTGGGACGGACTATTT
TTTAGGGATTTCATATTGGATAGCGATATCTTCAACACGAGGTGGTGCAA
ATAAAATCGAAGCGGAAATATGTAAACGAATTATGTTGGCTGGCTTGAAT
GTTAGTGATTGCAAAGAAATCATTGTCAGAGGTAAAAATTATTGTATATT
AAAAGGGGCGGCTTCAAGTTTTGTGAATCGGTACGGcatcttttgtaatt
ttgtttttaagttgAGAAGCCAACctcat Coding sequence (CDS) from alignment at sc0000348:326392..327320+ >TCONS_00020055 ID=TCONS_00020055|Name=TCONS_00020055|organism=Clytia hemisphaerica|type=CDS|length=1248bp|location=Sequence derived from alignment at sc0000348:326392..327320+ (Clytia hemisphaerica)
ATGAGTGAAAGATGTTCACTTCGCGTGAGCAAGATGTCAGGCGTACAAAT
GACCATAAGATGTGACACGATTAAAAGTGCACTTAAAAACTTCATAGTGC
CTATCGTTGTTGATAGATACTTTGTTATATCATTTCGTTGTCTATGGGAT
GTTTTTGATGAAGACCTTGAAAAAGCCAACTACAACCTTGAAAATAAAAG
AGAAGAGATTGAAACCATAATAAAGCGTTTTGATGAAGTGATGCTTTACT
TTTCCTGTCTTTGTGGCATGAAAGTGAGCGACATGAGACACAAACTAATC
AAACGAAAAAGGCAAGAAGAAGAGAGAAGAGAAGCACCGTTAGATTCGGA
TGAGGATTATCAAAGTTACGAAATAGACGGGGAGAAAACCGTCATACCAG
GGATTTCATATTGGATAGCGATATCTTCAACACGAGGTGGTGCAAATAAA
ATCGAAGCGGAAATATGTAAACGAATTATGTTGGCTGGCTTGAATGTTAG
TGATTGCAAAGAAATCATTGTCAGAGGTAAAAATTATTGTATATTAAAAG
GGGCGGCTTCAAGTTTTGTGAATCGGTACGGcatcttttgtaattttgtt
tttaagttgAGAAGCCAACctcatATGAGTGAAAGATGTTCACTTCGCGT
GAGCAAGATGTCAGGCGTACAAATGACCATAAGATGTGACACGATTAAAA
GTGCACTTAAAAACTTCATAGTGCCTATCGTTGTTGATAGATACTTTGTT
ATATCATTTCGTTGTCTATGGGATGTTTTTGATGAAGACCTTGAAAAAGC
CAACTACAACCTTGAAAATAAAAGAGAAGAGATTGAAACCATAATAAAGC
GTTTTGATGAAGTGATGCTTTACTTTTCCTGTCTTTGTGGCATGAAAGTG
AGCGACATGAGACACAAACTAATCAAACGAAAAAGGCAAGAAGAAGAGAG
AAGAGAAGCACCGTTAGATTCGGATGAGGATTATCAAAGTTACGAAATAG
ACGGGGAGAAAACCGTCATACCAGGGATTTCATATTGGATAGCGATATCT
TCAACACGAGGTGGTGCAAATAAAATCGAAGCGGAAATATGTAAACGAAT
TATGTTGGCTGGCTTGAATGTTAGTGATTGCAAAGAAATCATTGTCAGAG
GTAAAAATTATTGTATATTAAAAGGGGCGGCTTCAAGTTTTGTGAATCGG
TACGGcatcttttgtaattttgtttttaagttgAGAAGCCAACctcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020055-exon-sc0000348-1491911889:326392..326923 | TCONS_00020055-exon-sc0000348-1491911889:326392..326923 | Clytia hemisphaerica | exon |
| TCONS_00020055-exon-sc0000348-1510915933:326392..326923 | TCONS_00020055-exon-sc0000348-1510915933:326392..326923 | Clytia hemisphaerica | exon |
| TCONS_00020055-exon-sc0000348-1575043694:326392..326923 | TCONS_00020055-exon-sc0000348-1575043694:326392..326923 | Clytia hemisphaerica | exon |
| TCONS_00020055-exon-sc0000348-1491911889:327097..327320 | TCONS_00020055-exon-sc0000348-1491911889:327097..327320 | Clytia hemisphaerica | exon |
| TCONS_00020055-exon-sc0000348-1510915933:327097..327320 | TCONS_00020055-exon-sc0000348-1510915933:327097..327320 | Clytia hemisphaerica | exon |
| TCONS_00020055-exon-sc0000348-1575043694:327097..327320 | TCONS_00020055-exon-sc0000348-1575043694:327097..327320 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000348 | supercontig | sc0000348:326392..327320 + |
Blast
The following BLAST results are available for this feature:
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