TCONS_00020050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020050
Unique NameTCONS_00020050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length674

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020050 ID=TCONS_00020050|Name=TCONS_00020050|organism=Clytia hemisphaerica|type=transcript|length=674bp
aaaaaaaatttccataattatatttgactatcaaaagttacagacattct
tgtttccactgccaattatatctggacagactttagattcTTTTATCCAC
ACACACACACTCAAATATCAACGAACCTGAGCAACAGTTCAAAATACTAA
AACAAAATGTCAAGAGAATAGTCCTCCAAAGGCAAAAGTTAAAGATGTCT
GGTTTTCGAATCAAGCTGTTCAGAAATGGTAAAAAAGATTCTGGTTTGGT
GATTTCAATTCCTGAGTCTTATGAAAGTCTAGTAAATGTTGCATCCAATA
AATTTGAGCAAAGaatatcaaaactttatttatCGGATGGATCATTAGTG
ACCACCATCAACCTCATCAGGTATCTTACTTCTAAAAGAATTTCACATTT
TGTGTCTGTCACGCTTAAATGGTAGGTAAACTGCAATTTTGAATGGTTTG
TCAGGGAGTTGATTCAACTATGAAAGAAGGATTTTGTGCAGTCTTTAAGA
CAAAAATcttattgtttttttgaaaagcaGTAGAATGATGAAATTCCCCT
TAAAGTCAAAGTTAAAGAACATCAACAAtaccatctttatcatcctaagg
gcttttgatgtgtaaGCTTTTGATAATAAGATAATAATTTCATCTTCAGA
TCTCCCTAATAACTCTGCTTGGCT
Run BLAST on NCBI

transcript from alignment at sc0000348:241113..243373+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020050 ID=TCONS_00020050|Name=TCONS_00020050|organism=Clytia hemisphaerica|type=transcript|length=2261bp|location=Sequence derived from alignment at sc0000348:241113..243373+ (Clytia hemisphaerica)
aaaaaaaatttccataattatatttgactatcaaaagttacagacattct
tgtttccactgccaattatatctggacagactttagattcTTTTATCCAC
ACACACACACTCAAATATCAACGAACCTGAGCAACAGTTCAAAATACTAA
AACAAAATGTCAAGAGAATAGTCCTCCAAAGGCAAAAGTTAAAGATGTCT
GGTTTTCGAATCAAGCTGTTCAGAAATGGTAAAAAAGATTCTGGTTTGgt
gagtttttttattttagttgtcttttatatattttgtatttattcttTAT
AGCTATCCACCAGCTAGTCTCAGAGCTTACCAATTCTTCAAGATTTCAAA
AGCCTACACAGAGGAACTTTTTCATGATCTGTTTTCATCATCCTAggcga
ccatcgaaaaattgttccgTAAAAATGCATACAGGCGAACAGGACCCTGc
caacgcaccggactgtccggtgtatttgtctggtggcaaaaagtatcctt
tcgctacaccggacgcaagaagcgctacaccggacgcaagaagtccggtg
tcagtccggtgttgcatacagggaattttggacgccggacatttatgaaa
caaaaaattaagaaacaccggatgcactggactggtcatgtccggtgttt
tgattgttcggtgggaaaaaatatccttctccaacaccagacatccgact
tccttaagtccggtgtagaaattgtccggtggtaaaaaaaattctcattt
tacaccggactttcgcgtgtccggtgttcgttaagtccggtgcgtcagcA
GGGTCCTGGGCGAACGGGCGGTTGGAAAAATTCCCAAGTTTTTTAAAATC
ACTTCTGTACCGTGAGTCCGAACATCCGACAGCCCTGcttaaatccgacc
ccccaaataactgctatgaaaaaaaattctatgtttacaaacattccctc
tccaagttgaacaagaaactatattgcaagaactctcgaatcaaaacatc
taacaagatgactaaaatgtgaagatgtcaattaatgtgataaaaaagtg
tgagttgtaaaaataattacctttattattctgaatctgttgctcgtgtt
taaaacgttaacaattttgtaataaaaaaatatgctttGTATAAAGAAGC
atttaatgttttggttcaattgattcagtgtatcaaatctctcagtttag
ttgacactttggtatcttcattgtgtcacagcaaaaagtttgtttttatt
ttagtttgtatctttgaaagaccccattggATTAAGGCAGgcctgtcgga
tttaggaccactcatggTAAGTCGGGGGGAGGTGGTGACacgaacagaac
aattttctgATAGCCGCCAGAGCAATCAAGAAAAAAGCTAcggtgagtgg
tcctaaatcctacagccctgcctaattccgatcCCCCAAATGTAAGGTTG
GAAAGTTCAGCAAATCCCAAAaagaaattgcaatttttgcctgaaaatta
gatttttttctctaaaaatattgtaaattgCATAGTTATCAAGTGTCTTG
CATCCTGCAGGGCACGTACGACCTGTTGTCCCGCTGTATGCCCCCTAAAA
TCCCAAGCTGAATTTTGCGCTCGCTTTGTTTGCATCTGATCACGCATTCG
GAATTTTGAAACTTGGCAACTATGGATTTGTATCAGTTGCTTGGATTGCA
ATGTAGATTCTGTGGTTGAGAAGAGTCAATCATTTATTCTGTCATGAAGA
ATATTGACAGTCCTCTATTGAGAACAAACAATTACACCATATTAAAGGAA
GATAAAATGTGTTTTTATTTCACTCTCAATTTTAGGTGATTTCAATTCCT
GAGTCTTATGAAAGTCTAGTAAATGTTGCATCCAATAAATTTGAGCAAAG
aatatcaaaactttatttatCGGATGGATCATTAGTGACCACCATCAACC
TCATCAGGTATCTTACTTCTAAAAGAATTTCACATTTTGTGTCTGTCACG
CTTAAATGGTAGGTAAACTGCAATTTTGAATGGTTTGTCAGGGAGTTGAT
TCAACTATGAAAGAAGGATTTTGTGCAGTCTTTAAGACAAAAATcttatt
gtttttttgaaaagcaGTAGAATGATGAAATTCCCCTTAAAGTCAAAGTT
AAAGAACATCAACAAtaccatctttatcatcctaagggcttttgatgtgt
aaGCTTTTGATAATAAGATAATAATTTCATCTTCAGATCTCCCTAATAAC
TCTGCTTGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011269XLOC_011269Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020050-exon-sc0000348-1491911889:241113..241360TCONS_00020050-exon-sc0000348-1491911889:241113..241360Clytia hemisphaericaexon
TCONS_00020050-exon-sc0000348-1510915933:241113..241360TCONS_00020050-exon-sc0000348-1510915933:241113..241360Clytia hemisphaericaexon
TCONS_00020050-exon-sc0000348-1575043694:241113..241360TCONS_00020050-exon-sc0000348-1575043694:241113..241360Clytia hemisphaericaexon
TCONS_00020050-exon-sc0000348-1491911889:242948..243373TCONS_00020050-exon-sc0000348-1491911889:242948..243373Clytia hemisphaericaexon
TCONS_00020050-exon-sc0000348-1510915933:242948..243373TCONS_00020050-exon-sc0000348-1510915933:242948..243373Clytia hemisphaericaexon
TCONS_00020050-exon-sc0000348-1575043694:242948..243373TCONS_00020050-exon-sc0000348-1575043694:242948..243373Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:241113..243373 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.50949	2.7068	3.58774	2.36029	6.21011	3.52291	6.80464	5.81525	5.81059	10.9446	12.2155	5.01092	3.86704	4.61732	3.61362	4.50781	5.3018	5.20166	1.87291	3.24127	5.63751	5.99801	7.46403	8.66862	5.29182	5.14977	8.34997	9.19948	6.34641	5.42043
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top