TCONS_00020046 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020046
Unique NameTCONS_00020046
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1937

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020046 ID=TCONS_00020046|Name=TCONS_00020046|organism=Clytia hemisphaerica|type=transcript|length=1937bp
AAATGCGCCagataaaaacaactttcttgacaagaaaaaaacaaaagtgc
AGTGTGATAATGTTTACTTTAGCAATTTAGATACACAAAATAGCTGATTT
AATATGTACTTCTCAAATGACATGGAATCCAAGGTAGAGGTGAACATCAG
AGACGAATCGAAAGTTTACAAATGCAAAATTCAAGCCCAATAAAATGCTG
TTCAGATGCAAATTTGCCTATCGAAAAGTGTGATTATAGACCAATCATGA
GCCAGAAAAACTGGGAGGTTTTCCCAGGAAGAAACAAATTCTATTGTGAT
GGAAGGATAATAATGTCAAGAAGTAACTGTGTATTTGCAATGACTGTAAT
ATTGATTATCGGAACTACTGGACTGTTCTTTGCTTTTGACTGTCCATACT
TGTCTGAGAAAGTGACACTTGCGATTCCAATAGTTGGAGGGTTGCTGTTT
CTGTTTGTTATGGGGACATTGTTAAGGACTGCATTCAGTGATCCAGGAAT
CATACCAAGAGCACAAGCCGATGAGGCAGCTTACATAGAGAAGTCTTTAG
CTCCACAGACTATGGAGCCAGGTGTTTACCGCCCCCCTGCAAGACAGATG
GATGTGGAGGTCAAAGGACAAAttattaaattaaaatattgCTTTACGTG
TAAGATTTTCCGACCACCTAGAGCATCCCATTGCAGTATGTGTGATAACT
GTGTAGaaCGTTTTGACCATCATTGTCCATGGGTTGGCAATTGTGTAGGA
AAAcgaaattatcgatatttttatttatttttggtaTCATTGTCAATACA
CTGTATATTCATCCTCGGATGTGTTATAGCTCATTTAGTACTATTGAGTA
AAGAATTATCATTTCTAGACGCTTTAAAGGAGACACCTACCAGTGCTCTA
GTATTTATAATTAGTTTCTTCTCGGTGTGGTCAGTGGCTGGTTTGGCTGG
TTTCCACACATATTTAGTATCAAGTAATCTGACAACCAATGAAGATATCA
AAGGTACTTGGGCCGCCAAGCGtggtgaaaaaaatgaaaaccctTATAGT
GAAGGGTCATTATTTGGCAATTGTTGTCGCGTAATATGTGGGCCTGTTCA
TCCAAGTCTCATACGACGTCGAGATCCCGTCATACCGGAGGCTGAGAAGA
ATGACGTCAACAACAAAACTAATAATACTTCTACTGCAATAAGTCAGCCG
GATACAGAAAGTGGGGATATACTACTTCACGATATCGCTTCGATGCCGTA
AAATCAAACATGAGACTATTATGGTATTAGAGTTGTTTTCGAAAGCAATA
TTTCTAAAGACATTTGTTTGCTTGGAATATGCTTGGAATTCCTACTTCGT
TTTACCATTAGAAAAAGattaaattgtcttttttttgtttatataacTTT
GACAGATATTTTGTTGATAATATTTCTAGAATTCTAATAGAGGAGATATT
TCTTTTTATGCttattgtaaattttatttttggccaTATTATTATGATGT
GGTCAAAATTCTCACaatattttttcacaatttttaaagactttcattct
ttttcttgcatttttacACTTTACACTAactaatgttttttctttactgt
tttttttaatttctcccCCCAATGGCGAAGAATTGAATATTTGTGGATCC
AAAAAGTGTGTGTGGAATATTTACGACAGTTATTAAAATCATCCTCGAAA
ActtctgaaattaaaaaaacaacatcattTTTCAATAAGGATTTTCATGT
ATAAtattatattttacatttttggtTGCTAGAACAGGCTAGAACACTTT
TTCACTCAAGTTTGGAAGGAAATTTGAGAACACGACAATTGTATTATGGT
ATAGTTGtatattttataaattcttTTTTGTATACACTTTTTCCTTCGAA
GAATCTTCTCTAAAGATATACTAAATAAATATCGAAA
Run BLAST on NCBI

transcript from alignment at sc0000348:222453..232524+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020046 ID=TCONS_00020046|Name=TCONS_00020046|organism=Clytia hemisphaerica|type=transcript|length=10072bp|location=Sequence derived from alignment at sc0000348:222453..232524+ (Clytia hemisphaerica)
AAATGCGCCagataaaaacaactttcttgacaagaaaaaaacaaaagtgc
AGTGTGATAATGTTTACTTTAGCAATTTAGATACACAAAATAGCTGATTT
AATATGTACTTCTCAAATGACATGGAATCCAAGGTAGAGGTGAACATCAG
AGACGAATCGAAAGTTTACAAATGCAAAATTCAAGCCCAATAAAATGCTG
TTCAGATGCAAATTTGCCTATCGAAAAGTGTGATTATAGACCAATCATGA
GCCAGAAAAACTGGGAGGTTTTCCCAGGAAGAAACAAATTCTATTGTGAT
GGAAGGATAATAATGTCAAGAAGTAACTGTGTATTTGCAATGACTGTAAT
ATTGATTATCGGAACTACTGGACTGTTCTTTGCTTTTGAGTAAGATTTCT
TTTGCTAGGTGTGGGGCCACCATTTTTGTTCCATTGTGCGTGATGATTTC
TTCATGAGTTTTAAGTTTTATTAAAGTCCATTTGCTTTTTAAGCTAACAA
TAACTCTTGTTTTGCCTGCTATCTTTTACGATACGATACgatattttgtg
aaaaattgtcCTATCTatggaacaaaagaaaatacctTACTGTATTACAA
AAATATTACTGAAgtgtatccagatataattggcagtggaaacaagaatg
cctggaATGCTTTTAATAGTCCGATGTAAttgcaaaaaatctttttgctt
cttttagaaattcaaaagcgctatatttgaatgtattttttgttgaaaaa
tgtgcGATTTTTAGCAGTTAAATTTgcaattgcaaaaattgagctttttt
tctgttttcgctacaacgttcatttttacaccagtgatagttcaacctta
ggttaagaagatttcaaatttcaaggcaaacagaaacaGACCTGCCAACT
TAAGATGTTCATTTggcgtgagataaaaatttcgaaggaaaatcCGAAAT
CTTAGCccgattttgccaattttccgACTTCGGAGAacggaaaaattttt
ccaaaaaatcggaaaatcggggaaatttattccgaaaatcagaaaatcgg
ggagatttttttcccaaaattcggaaaatcggggaaatttattccgaaaa
tcggaaagtcggggaaatttctttcaaatataaattaaatgcgtgagaaa
tcaaacttttgaaaaattgcgtgAGACAGTGTTGGAATGCGTGAGTCTCA
cgtccaatagacctttttgcctttgcgtccgccatattgaattgtatgca
aaaatacaggaacgaaaatgccgtggttggatttagttggaatgtatgca
aaacatatgcaagtttacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttgat
ttgatcatttggcggctctattcccaggagaataatttgccgtcagccga
ataaggattattttttaccttcgcgggtgatttttcagtttgagattttg
tctaatgttatggtcttttgaagtgcttgttctaagagatgagtgaatat
aagtgtttttagttttcaagagaagcaaatttaatctttcttctacaaga
ttagactttaatataatgccaattatgcatgtaagtttttatttaatact
ttctttttgcatatgttttgcatactttctaagggaatttcaccacggca
attcggcaaccataatttttgcatacaattcaatatggcggacgcaaagg
cgaaaaggtctatgcgtgagagttggcacctctgcagaaaagtccttcaa
aagatatgggacccaaaataccccttggtagtaCTTTTCTGTGAAATCTT
GGCAAATCTtcaactttttaataaaaacagggGTGGTGATGATCAACAGT
TTTTCAATCATATATTATAtcacattttacgatctttttacgataatgac
ctcatagccaaactgtgctTCACatatagaagatctttcaaattcagtat
gtgaatagagcagtaaaaaatacaacttttctatttttccttttttgtgc
caaagttctaggaatgaaaataaagggataatgataattgaatactatcc
atccattgatgatccgctgCTCTATCATAAAGCTAAAatcgctttgcgta
ctcttcgcttaagaaaatgattgaccgattgaagtttttcactcGCACGG
GAGCCCGCTGACGTTCTGTATGGCGCGCCAAATTACTTTTTatcaccaac
ttttttttcgacaccaactttttttttcgacaccaatttttttttttcaa
caccaACTTTATTTTTCGATAtcacaataattttttttatacttttattt
tccgatactaACTCTTGTCTCCATTACCTGCTAACGTTGATTACTCAAAG
TGTAATACATGCACATGCGCATCCTCCaatcacagatttctgtaaagccc
gagaagggctagatggagtgctttaagctcttccaagcaaaaaaaagtga
acatctgaaaaaatatttctgctatttttttcaaaaatccgcaaagcttc
tgattggtcaagcgctgaaattctattataatGTCATGTGACTTAGATAG
GATTTCCTATCTAActttgacacactttttagcaaaagcacgccatctag
cccttcgggctttactaCATCATTGCCGATCATCCACTCTGCTCTAAAAA
GGTGGCGTGATTGGGCTtcacccattgagtttcaagcccgaagggctctt
agaggcgaatctttaacccttctcaggcaagagacaTTGaaggtacctta
tcggggaaaactttgtcggggaaaattttcgttggtgaaaatttttgttg
gggaaaaatttgtcacttgctggtagttggtaaacgcattaaggcagGGG
AGAATTTTTGTTGGGGAAAATATttgtcacttgtccaaaatttcgtctct
tttccctgacgaagttttccccgataaggaaaaaaaaaaagtttgtgtca
GAGAAAAGATAGTATATATGAAAAAACATGAAGTTGGTCgcataaaataa
aaagttggtatcagaaaaaaaaattgatgtcaaaaaacaaaagttatata
tgtcaaaaaacaaaagttggtgtcgaaaaaaaaagttggtgtcaaaaaaa
aagttggaaataaaaagtaattcgGCGCGTCATAGTTCtgcgagcgttct
cggctcaatccttggaCCGCGCTAAAAGTGGTAGACttagctgtgataga
tcatttcaatggaagttgttggaatgtttacaaggctcttgatagaaaat
cgtttgttttattgtTGACAGTGCGGTTATTGATTTTGTtagatctgaca
aattgatgtttgtaagtgcactttatagttttgattcccattgaagaatc
atattctggttttcatgttattagatgctgttttaggcGACTGGGGTTTG
ATTCCTACTCGCGgtggcaagtgaacaaaccttcgcccgggttaactcat
gccatgtgaggggaattgggtagtcagtccaaggtgctgacagggtgctc
attgaaagcgtctatagttgcgaacaTAGGCCTCAAAGcttcctgcaact
caaccaaatagagattagagctttagagctagcctgcttattaacacgaa
ttgaaagaTTTCGTGTTACTAAAAACCCCCTTAGTTAAAACCAGccatgg
tgtccttgaaaaagcaaataaaatttgtgttaatttttgcgtgttaattt
ttgcatgttaatttcaaggccattgaatacttgcctagtaatatctGTGT
AAGGGGAGTCTTCCAAACTCAGACTTGCCACATAAAACATCAAATGGACG
TTTTAATTTCGAACCCCTACCTCCCTTCAAAAAACGTCAGCCGTGCAATC
AAACTTGATCTCAAAATATTCAACCCTTCTCCCATCGCTTGCTGTAAATA
TTCCATTGTTGTTAATCGTATTCAAATAtccttgttttagccaaatttag
gaaattaactgagaagaaattctttctttttcttttatcctttagaggac
aaatataagtacattatgtgaaaatttcaagtctctagcactttcctaTC
CGAAATTATCTTGATTGAGGACGGGATAGAGGtatctctcgaaaacgaaa
gtgcccaataactggtgaacagtttgatgtatcaaaaaactcttttttct
acttttacattgctataaggagactttatataccaaatATCATCTCCTTA
TGATCACTACTTTAGGAGATACAagggatattagccaaaataatcccgat
tttacaaaagttccaatgaaagaaaGATCACTGTGCACAGTAAACCAGAA
TGATATCTCTCAAAATGTTATTGAGcccaattttgaagaaaaaagttatt
TCTGGTCACTAGATTCAGAAATGTCTCAAAAAAgtggtttttaaatttta
gggaattcctcgagattttctcattggTTTTCTTCAGTCGttctgtttat
tttattttttgaatttgaatgttttCTGTTGATGAGCCAGGTAgttccat
aaaagtatcacttgtttcttcATTATTAATCTTCattcaaattaaaattg
aaaaagtttctacTAAAAATCATAGTGCTCTGAATGATCTTTTCAACAGT
GTGATATAATTTGTTACAATTGAAGGATTAGTCCAAAAATGGTATgcaaa
agaaaatcttaaagCAATCtaattcaaaacttttattaGAAATTGGACAT
TTTATTAGATAGTAATATTTGGATTATTTTTTACAGCTGTCCATACTTGT
CTGAGAAAGTGACACTTGCGATTCCAATAGTTGGAGGGTTGCTGTTTCTG
TTTGTTATGGGGACATTGTTAAGGACTGCATTCAGTGATCCAGGAATCAT
ACCAAGAGCACAAGCCGATGAGGCAGCTTACATAGAGAAGTCTTTAGGTG
AGATTTAAAACTTTACTATATGATATGTTGGTTTTGAACACTATGTAACC
AAAAGTACGGATAATTctgtctttgttttgattttaacaaTATTCTTAGA
AAATTAAATGGATTTCAAATactctttgaattttttctctttcacAGCTC
CACAGACTATGGAGCCAGGTGTTTACCGCCCCCCTGCAAGACAGATGGAT
GTGGAGGTCAAAGGACAAAttattaaattaaaatattgCTTTACGTGTAA
GATTTTCCGACCACCTAGAGCATCCCATTGCAGTATGTGTGATAACTGTG
TAGGTAAGTAGTGAAGCAAtctcttttcttcttcaaaacTTCACAGCAAC
AATTTTATCAGTTGTTTCATATTCTGATCCCCTCAAAGGATTTAACTTAT
TTTGTTGTGTGTAAAATTAATTAGCATTTAAGTGGAACTtaagattttta
agatttttaagatttttagtGAGAAATGCATCTTGCAGGAactaaatttt
atattttaaacaACTAAAATGCAAAATATAGTACCCTTAAGAAGGTAAGG
TTTCAAATTAGGGTTTAAAACCAACacaatatttcttttcttttagaaCG
TTTTGACCATCATTGTCCATGGgtaagttgaaaaaaaattatgatttgaA
ACATAGCTAATCAGTTTTTGAAAACGACTGACAAGATTGCATATTTTCAC
TTATTAATTCTCGAAATTTCATTTATATTCCATGGTCTAGTGGAGAGCTG
AAGTATTTAGTGGTCTTTAATTGATAAGAATGAACATTGAAATGTATATT
ATATTGAATACCTTACTTATCCTAAGTATGACACTTAAGAAGTAAATACT
TGGAACCTAGTCAAGTTGATTTCTTTGTGTGAATTTTTCACCAAATAGCT
ATTTACACCGAGagctttctttttgcttttccaGGTTGGCAATTGTGTAG
GAAAAcgaaattatcgatatttttatttatttttggtaTCATTGTCAATA
CACTGTATATTCATCCTCGGATGTGTTATAGCTCATTTAGTACTATGTGA
GTATATTTTGTGTTGCTTTTATTCATTTTCCTCAGAATTTTTAAAGCACT
AAATgtttattttagaatttttgaagaTTACATGGAATTTAATGTCATGA
TAACAATTTTCTTATCTCTTTTTAGTGAGTAAAGAATTATCATTTCTAGA
CGCTTTAAAGGAGACACCTACCAGATATCTTTTCATATTTTGTATAAGAA
ATATTCTTGTGAAGGNCCCCCCCCCCCGCTTCAGAAAGATAGCTATCAAA
GGAGGACGCTATACTTCTATTatatttcttcaatttttgacgTTCCCCGA
GCAGCCCTGAAGAGTGAGCAAGGTACACACTATGTTTAAAGGTGGTTAAA
GGATATGGGGCTGAGACTTTGATACTGCGAATGGGTATTCTTGAGGTTTT
AACACTATACTGATATCTCTGTCTAGTCATGAGAGtactgttttattttt
cttcaacaACAACGTTATATTTTCCTTGACGTTTCTTTCATCTACTGCTC
TAGTATTTATAATTAGTTTCTTCTCGGTGTGGTCAGTGGCTGGTTTGGCT
GGTTTCCACACATATTTAGTATCAAGTAATCTGACAACCAATGAAGATGT
AAGATTGAATCTTTATTTCCTTAATGCTTTTGTTGAagtgtattcatgat
atgcaccactgcaatgacttcacgaaattttgcaacttttctgttcttct
tccacccaatacgtcactttttctattgtttatgtGACGtactgggtgga
aaattttaaaagttacttcagaagactctccagtggtgcatatcatgaat
accatcagtatataaaaaaAGTCTTCGTACTTGAAGAAATTTAATTAAGA
AAAAGCACTCTCTCGTATTATCACTGATCTCTACAAAATGAAGAGGACCT
TTAACGAATTGTGTGCTTTGATTCCGTTTTCCTGTGAAATACTTCAAAAC
CTTTGCAAAAAGGGGAAACACCTACGACATTATCTCtaccatagtgtcct
ccagggtttgttccccccaccaaattcttgatttttttaaatttcccccc
tctttttattcccctatgacttttcggttttttagtttcccccctctttt
ttttcccccccagaaaatactgaaaatatcagttcccccatatacccata
taaatttctcaaatttcaacctgacacaaacgtaaaattttgctgcaaaa
gaaATACTaaacaaaatagaacgaaaattggttaatttttcaatcatgat
ctaatcacataATATCATGTagactgaccttggttgctgagataaagtta
aagtgatttcacacttccccccaccaaatttgcctACTATCGATGTTTCC
CCCCTCTTCCCCCCGCCTtcactattcaaattttcatttccccCCCCCTC
AtccattcaaaattggaaaattggttttCCCCCTATTTATAAATGGGGGG
GGCGGGCGGGAGGACACTATGTCTACACAAAAGTTTTGTTATTGTAGTAA
TGGTTATAGGTTTTTTTTCGCTCTAAGCTTTTTTATATGTCTATAATACC
GTTACCTGATTTCTTTCATTAGATCAAAGGTACTTGGGCCGCCAAGCGtg
gtgaaaaaaatgaaaaccctTATAGTGAAGGGTCATTATTTGGCAATTGT
TGTCGCGTAATATGTGGGCCTGTTCATCCAAGGTACgttttactttcatt
ttgagaaaacaatttatttttgCATATCAACTTCTGCAAGGTATACTTAT
TATTtgcttttaaaacttttcaaaactacaggattttctctttttacaaa
tctttttaaGCTAATAAGTGATAACAAAGCTTTTAAAAAGAATTGGCTCT
GACTTTAGCTTCTTCTACTGTGTTCTCTTTTAGTCTCATACGACGTCGAG
ATCCCGTCATACCGGAGGCTGAGAAGAATGACGTCAACAACAAAACTAAT
AATACTTCTACTGCAATAAGTGTAAGTGTTTTGCAAATTTTCTATTGAAC
CACCATACACTAGAGTTTTACAAGttttgacttaaattttgaaacaacGT
CAGTTCTTTGAAACCTTAAAATGTAATGACTTCAATCTTCCCGCATTATA
TCACATCATGGACATAACTTCTTGCATTACTGAGGCACAACGACAACTTC
AAGACTGTTTGAGGAACTtctttctcatcaaaatattgCCAATTGACTAG
CGAACCTTGTCTGAAATTCAAAGTTGACATATTTTTTGCCCATGCGTTTT
AATCACATCGCAATGGTATAAAATATGTAACCATTTTTGTTCACTATTCT
TTACATCGGGATGTTTTCTTTATATCGGGATTATTCTGTTGATGTCACTT
TTGGATTGTTCTAAACTTGACTGATTTACAACAAGACGATGTCTAATGAC
TATGACTTTGACTCATAACTTACTCGTTACAAacatatgaaaatatttac
caTTTCACCGCCCATTCATTCTCATTCTCTTTCAACAGATACCAGACGTA
CCACCCACACCGCCCATCATACATGACATTGACACTGAATCCTTACAGTC
ACAGAGTGCGCCCATTCTTGGAAACAGGACGTCTATCAGTTCAGACACTT
TTCATGACGAGAGTGAAAATGGACTCTTGAAACTTAGCAGTGTATGATAA
TAGCGATAAATAGTGAATTAACGATTGCGCATCCGTTTAAGATGCGATAG
ACACTTAAAATGACTTCATGCTATAGCAGTGCATTGTATTATTATGGTTA
GATGAATTTTATCTCATCCATTTTCACAGCAGCCGGATACAGAAAGTGGG
GATATACTACTTCACGATATCGCTTCGATGCCGTAAAATCAAACATGAGA
CTATTATGGTATTAGAGTTGTTTTCGAAAGCAATATTTCTAAAGACATTT
GTTTGCTTGGAATATGCTTGGAATTCCTACTTCGTTTTACCATTAGAAAA
AGattaaattgtcttttttttgtttatataacTTTGACAGATATTTTGTT
GATAATATTTCTAGAATTCTAATAGAGGAGATATTTCTTTTTATGCttat
tgtaaattttatttttggccaTATTATTATGATGTGGTCAAAATTCTCAC
aatattttttcacaatttttaaagactttcattctttttcttgcattttt
acACTTTACACTAactaatgttttttctttactgttttttttaatttctc
ccCCCAATGGCGAAGAATTGAATATTTGTGGATCCAAAAAGTGTGTGTGG
AATATTTACGACAGTTATTAAAATCATCCTCGAAAActtctgaaattaaa
aaaacaacatcattTTTCAATAAGGATTTTCATGTATAAtattatatttt
acatttttggtTGCTAGAACAGGCTAGAACACTTTTTCACTCAAGTTTGG
AAGGAAATTTGAGAACACGACAATTGTATTATGGTATAGTTGtatatttt
ataaattcttTTTTGTATACACTTTTTCCTTCGAAGAATCTTCTCTAAAG
ATATACTAAATAAATATCGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011267XLOC_011267Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020046-exon-sc0000348-1491911889:222453..222841TCONS_00020046-exon-sc0000348-1491911889:222453..222841Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1510915933:222453..222841TCONS_00020046-exon-sc0000348-1510915933:222453..222841Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1575043694:222453..222841TCONS_00020046-exon-sc0000348-1575043694:222453..222841Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1491911889:227789..227949TCONS_00020046-exon-sc0000348-1491911889:227789..227949Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1510915933:227789..227949TCONS_00020046-exon-sc0000348-1510915933:227789..227949Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1575043694:227789..227949TCONS_00020046-exon-sc0000348-1575043694:227789..227949Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1491911889:228100..228255TCONS_00020046-exon-sc0000348-1491911889:228100..228255Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1510915933:228100..228255TCONS_00020046-exon-sc0000348-1510915933:228100..228255Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1575043694:228100..228255TCONS_00020046-exon-sc0000348-1575043694:228100..228255Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1491911889:228549..228574TCONS_00020046-exon-sc0000348-1491911889:228549..228574Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1510915933:228549..228574TCONS_00020046-exon-sc0000348-1510915933:228549..228574Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1575043694:228549..228574TCONS_00020046-exon-sc0000348-1575043694:228549..228574Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1491911889:228887..228998TCONS_00020046-exon-sc0000348-1491911889:228887..228998Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1510915933:228887..228998TCONS_00020046-exon-sc0000348-1510915933:228887..228998Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1575043694:228887..228998TCONS_00020046-exon-sc0000348-1575043694:228887..228998Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1491911889:229128..229176TCONS_00020046-exon-sc0000348-1491911889:229128..229176Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1510915933:229128..229176TCONS_00020046-exon-sc0000348-1510915933:229128..229176Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1575043694:229128..229176TCONS_00020046-exon-sc0000348-1575043694:229128..229176Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1491911889:229498..229600TCONS_00020046-exon-sc0000348-1491911889:229498..229600Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1510915933:229498..229600TCONS_00020046-exon-sc0000348-1510915933:229498..229600Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1575043694:229498..229600TCONS_00020046-exon-sc0000348-1575043694:229498..229600Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1491911889:230575..230684TCONS_00020046-exon-sc0000348-1491911889:230575..230684Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1510915933:230575..230684TCONS_00020046-exon-sc0000348-1510915933:230575..230684Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1575043694:230575..230684TCONS_00020046-exon-sc0000348-1575043694:230575..230684Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1491911889:230886..230973TCONS_00020046-exon-sc0000348-1491911889:230886..230973Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1510915933:230886..230973TCONS_00020046-exon-sc0000348-1510915933:230886..230973Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1575043694:230886..230973TCONS_00020046-exon-sc0000348-1575043694:230886..230973Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1491911889:231782..232524TCONS_00020046-exon-sc0000348-1491911889:231782..232524Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1510915933:231782..232524TCONS_00020046-exon-sc0000348-1510915933:231782..232524Clytia hemisphaericaexon
TCONS_00020046-exon-sc0000348-1575043694:231782..232524TCONS_00020046-exon-sc0000348-1575043694:231782..232524Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:222453..232524 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.261065	5.09748	3.61015	5.61584	2.32967	3.7344	6.37604	3.43849	2.84488	2.84283	4.36056	1.79785	2.16786	1.65987	2.5339	3.47969	2.55556	1.01689	0.657174	3.736	3.22651	0.535926	0.742864	0	0
Blast
[Close]
BLAST of TCONS_00020046 vs. Swiss-Prot (Human)
Match: ZDH14 (Probable palmitoyltransferase ZDHHC14 OS=Homo sapiens GN=ZDHHC14 PE=1 SV=1)

HSP 1 Score: 422.55 bits (1085), Expect = 2.485e-140
Identity = 192/329 (58.36%), Postives = 247/329 (75.08%), Query Frame = 1 
Query:  217 PIEKCDYRPIMSQKN-----------------WEVFPGRNKFYCDGRIIMSRSNCVFAMTVILIIGTTGLFFAFDCPYLSEKVTLAIPIVGGLLFLFVMGTLLRTAFSDPGIIPRAQADEAAYIEKSLA-PQTMEPGVYRPPARQMDVEVKGQIIKLKYCFTCKIFRPPRASHCSMCDNCVERFDHHCPWVGNCVGKRNYRYFYLFLVSLSIHCIFILGCVIAHLVLLSKELSFLDALKETPTSALVFIISFFSVWSVAGLAGFHTYLVSSNLTTNEDIKGTWAAKRGEKNENPYSEGSLFGNCCRVICGPVHPSLIRRRDPVIPEAEK 1149
            P++ C+Y  I +  +                 WEVFPGRNKF+C+GRI+M+R   VF +T++LI+ T+GLFFAFDCPYL+ K+T AIP V G+LF FVMGTLLRT+FSDPG++PRA  DEAA +E+ +        G YRPP R  +V + GQ +KLKYCFTCKIFRPPRASHCS+CDNCVERFDHHCPWVGNCVGKRNYR+FY+F++SLS   +FI   VI H++L S++  FL+ALK++P S L  ++ FFSVWS+ GL+GFHTYL+SSN TTNEDIKG+W+ KRG++N NPYS G++F NCC  +CGP+ PSLI RR  + P+  +
Sbjct:    8 PMKDCEYSQISTHSSSPMESPHKKKKIAARRKWEVFPGRNKFFCNGRIMMARQTGVFYLTLVLILVTSGLFFAFDCPYLAVKITPAIPAVAGILFFFVMGTLLRTSFSDPGVLPRATPDEAADLERQIDIANGTSSGGYRPPPRTKEVIINGQTVKLKYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGKRNYRFFYMFILSLSFLTVFIFAFVITHVILRSQQTGFLNALKDSPASVLEAVVCFFSVWSIVGLSGFHTYLISSNQTTNEDIKGSWSNKRGKENYNPYSYGNIFTNCCVALCGPISPSLIDRRGYIQPDTPQ 336
The following BLAST results are available for this feature:
BLAST of TCONS_00020046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZDH142.485e-14058.36Probable palmitoyltransferase ZDHHC14 OS=Homo sapi... [more]
back to top