TCONS_00020020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020020
Unique NameTCONS_00020020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length282

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020020 ID=TCONS_00020020|Name=TCONS_00020020|organism=Clytia hemisphaerica|type=transcript|length=282bp
GTTTCTGTCGTTGGACGTTACACTGACACCATGAAAAACCTCACATCAAC
GACATTTATGGTTCCAATCCTAGACAACAACTCGCCAATTGCTTACAGCA
TTGCTTCAGAAGTTCATTGGCACGATCCAAACACTCAGCATTGTGGCATC
GAAACAACTCTACGACATGTTTTAAAGAAATGCTTCATCATCAATGGTCG
AAATCTCATGAAAAGGATCAAACGCTCATGTCAAAGATGTAGATTTCTGG
AAAAACGCACCGTTCAAATGGCAATGGGACCC
Run BLAST on NCBI

transcript from alignment at sc0000345:335396..335677

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020020 ID=TCONS_00020020|Name=TCONS_00020020|organism=Clytia hemisphaerica|type=transcript|length=282bp|location=Sequence derived from alignment at sc0000345:335396..335677 (Clytia hemisphaerica)
GGGTCCCATTGCCATTTGAACGGTGCGTTTTTCCAGAAATCTACATCTTT
GACATGAGCGTTTGATCCTTTTCATGAGATTTCGACCATTGATGATGAAG
CATTTCTTTAAAACATGTCGTAGAGTTGTTTCGATGCCACAATGCTGAGT
GTTTGGATCGTGCCAATGAACTTCTGAAGCAATGCTGTAAGCAATTGGCG
AGTTGTTGTCTAGGATTGGAACCATAAATGTCGTTGATGTGAGGTTTTTC
ATGGTGTCAGTGTAACGTCCAACGACAGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011252XLOC_011252Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020020-exon-sc0000345-1491911889:335396..335677TCONS_00020020-exon-sc0000345-1491911889:335396..335677Clytia hemisphaericaexon
TCONS_00020020-exon-sc0000345-1510915933:335396..335677TCONS_00020020-exon-sc0000345-1510915933:335396..335677Clytia hemisphaericaexon
TCONS_00020020-exon-sc0000345-1575043694:335396..335677TCONS_00020020-exon-sc0000345-1575043694:335396..335677Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:335396..335677 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.44512	3.28817	2.72706	1.6008	3.24803	2.56664	1.23862	1.15958	0.405924	2.51401	2.44016	0.320813	0.640734	0.665408	0	0.587075	0	1.48257	0	1.07167	1.39722	0	0	0	2.06874	0.461576	0.660513	1.40983	4.0403	1.63419
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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