TCONS_00020019 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020019
Unique NameTCONS_00020019
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020019 ID=TCONS_00020019|Name=TCONS_00020019|organism=Clytia hemisphaerica|type=transcript|length=266bp
AGATNAGACGTTGCTTGGGACTGGTGTTTCTTCCAGTATGTCCTTCTCAA
GCTCTTTATCAGGTATGTAATTCCTGATGTGCTTCTCCAGATACTTTACA
AGTCTGGGATCAAGTTTCCAGTCATGTTCATTGACGTCCATCTGGAATAA
TTCTGGTTTGTCTTCACTCGAATTAGATGATGAGGTAGAGGAACTTCTGC
ttctttttctggattttcgtttctttttgacttgctttttcttcttttgc
ttcttcttctttttNN
Run BLAST on NCBI

transcript from alignment at sc0000345:327185..327450

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020019 ID=TCONS_00020019|Name=TCONS_00020019|organism=Clytia hemisphaerica|type=transcript|length=266bp|location=Sequence derived from alignment at sc0000345:327185..327450 (Clytia hemisphaerica)
NNaaaaagaagaagaagcaaaagaagaaaaagcaagtcaaaaagaaacga
aaatccagaaaaagaaGCAGAAGTTCCTCTACCTCATCATCTAATTCGAG
TGAAGACAAACCAGAATTATTCCAGATGGACGTCAATGAACATGACTGGA
AACTTGATCCCAGACTTGTAAAGTATCTGGAGAAGCACATCAGGAATTAC
ATACCTGATAAAGAGCTTGAGAAGGACATACTGGAAGAAACACCAGTCCC
AAGCAACGTCTNATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011251XLOC_011251Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020019-exon-sc0000345-1491911889:327185..327450TCONS_00020019-exon-sc0000345-1491911889:327185..327450Clytia hemisphaericaexon
TCONS_00020019-exon-sc0000345-1510915933:327185..327450TCONS_00020019-exon-sc0000345-1510915933:327185..327450Clytia hemisphaericaexon
TCONS_00020019-exon-sc0000345-1575043694:327185..327450TCONS_00020019-exon-sc0000345-1575043694:327185..327450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:327185..327450 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.53399	11.5764	2.50506	1.74783	34.0042	22.0596	22.384	22.4009	3.07302	6.85531	2.37779	5.38293	2.69104	2.26675	50.8044	62.5956	45.6708	35.13	8.50564	10.3648	47.2279	37.9475	18.1292	15.6422	3.22292	0.71605	25.779	13.4518	25.6288	13.2802
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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