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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020009 ID=TCONS_00020009|Name=TCONS_00020009|organism=Clytia hemisphaerica|type=transcript|length=1174bp
AACAAATGCAACAGaagaaaaatcttaaatgaAATACAAACATACCAAAA
GGAATTAACAGTAAAATCTTGAAAACGCGAAAATTCACGTTTTTTTTCAC
ATATAGACACAAACAAATAAGAGCTGAAAAGATGGGGTTAAATTCGAACC
ATACACAACCGTTAGTCAAACTCATGAAAGCGTCTGTATATCCAACCCAT
GTGTTACCTATAAACCACAATACACCAACAATGGATGCTTTAATTTTCAG
TATAGTTGCTAGCTCGGTATCATTTTTTGGTTTAGTACTATGTACCGTTG
TCTTGGTGATAATCCGAACTGGTCATAATGCAAAACAGAATCTGATTATC
ACTATTTTGGTTACCATTTGTTTTGTGGAGAATCTCTGTTTCATTTTCTT
GTGGGGAAATCATTACATGTTTGAAGATCTAAACACACGGCGACAAATTA
ACCGACTTTTATTTATCGTGTGTACAGGACTTTATCAAATGTTTGTATTT
AGCTTAGTAGCAATGACCACTGATAGGTTCATTGCATTCTTTAAACCATT
CAAATATAAGAAGCTGGTCACACGGAgtcttattttcaaatattattgtG
TCACTATTTTCATAACTGTAGCAGTCCGTGCACCGTTTTTGATTGGCTGG
TCGAGCATACAACTTGGTGCGTTATTCAAGATCGACATCATCAACGAAAC
ATTGCTGCTTCTTCCCCAGCCTTTCATATATATTTCAATGTATCGGAAAT
GGAAAAACCGGATCGTTAGCTACAAACATTTAGACCGGAAAACGAAGAAA
CGCCGAAAAGCGGAACACAGAATATTTATTTTCCTATCCATCATTCTGTT
TGTGACGTGTCTCGCGCAAGCCTTTTCGGATGCTTTCCACGTGGTCGGCG
AACTAACCGAAAAGAACTACAGAATTATGGGATACCTAAGCAATGGATTA
TGGATcttcgtcatttttattacaccGGTCTGCCACGTGTTTGCTAAACC
GAGTGTCCGGCATAAATTTAATTCCTCAATGCGGAAATCATGGAGCAGTA
TACGGAACAGTTCTGTAAGGAGTTCCTCCAATGtttatgaaatgaaaatg
tcaaaagaCTCCAATTCGAACACTTTGACAAAAATATCACTGAGACAGTC
TGTGAAACGAGACGGAAATTGAAA Run BLAST on NCBI protein sequence of TCONS_00020009-protein >TCONS_00020009-protein ID=TCONS_00020009-protein|Name=TCONS_00020009-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
MGLNSNHTQPLVKLMKASVYPTHVLPINHNTPTMDALIFSIVASSVSFFG
LVLCTVVLVIIRTGHNAKQNLIITILVTICFVENLCFIFLWGNHYMFEDL
NTRRQINRLLFIVCTGLYQMFVFSLVAMTTDRFIAFFKPFKYKKLVTRSL
IFKYYCVTIFITVAVRAPFLIGWSSIQLGALFKIDIINETLLLLPQPFIY
ISMYRKWKNRIVSYKHLDRKTKKRRKAEHRIFIFLSIILFVTCLAQAFSD
AFHVVGELTEKNYRIMGYLSNGLWIFVIFITPVCHVFAKPSVRHKFNSSM
RKSWSSIRNSSVRSSSNVYEMKMSKDSNSNTLTKISLRQSVKRDGN Run BLAST on NCBI transcript from alignment at sc0000345:99291..100464 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020009 ID=TCONS_00020009|Name=TCONS_00020009|organism=Clytia hemisphaerica|type=transcript|length=1174bp|location=Sequence derived from alignment at sc0000345:99291..100464 (Clytia hemisphaerica)
TTTCAATTTCCGTCTCGTTTCACAGACTGTCTCAGTGATATTTTTGTCAA
AGTGTTCGAATTGGAGtcttttgacattttcatttcataaaCATTGGAGG
AACTCCTTACAGAACTGTTCCGTATACTGCTCCATGATTTCCGCATTGAG
GAATTAAATTTATGCCGGACACTCGGTTTAGCAAACACGTGGCAGACCgg
tgtaataaaaatgacgaagATCCATAATCCATTGCTTAGGTATCCCATAA
TTCTGTAGTTCTTTTCGGTTAGTTCGCCGACCACGTGGAAAGCATCCGAA
AAGGCTTGCGCGAGACACGTCACAAACAGAATGATGGATAGGAAAATAAA
TATTCTGTGTTCCGCTTTTCGGCGTTTCTTCGTTTTCCGGTCTAAATGTT
TGTAGCTAACGATCCGGTTTTTCCATTTCCGATACATTGAAATATATATG
AAAGGCTGGGGAAGAAGCAGCAATGTTTCGTTGATGATGTCGATCTTGAA
TAACGCACCAAGTTGTATGCTCGACCAGCCAATCAAAAACGGTGCACGGA
CTGCTACAGTTATGAAAATAGTGACacaataatatttgaaaataagacTC
CGTGTGACCAGCTTCTTATATTTGAATGGTTTAAAGAATGCAATGAACCT
ATCAGTGGTCATTGCTACTAAGCTAAATACAAACATTTGATAAAGTCCTG
TACACACGATAAATAAAAGTCGGTTAATTTGTCGCCGTGTGTTTAGATCT
TCAAACATGTAATGATTTCCCCACAAGAAAATGAAACAGAGATTCTCCAC
AAAACAAATGGTAACCAAAATAGTGATAATCAGATTCTGTTTTGCATTAT
GACCAGTTCGGATTATCACCAAGACAACGGTACATAGTACTAAACCAAAA
AATGATACCGAGCTAGCAACTATACTGAAAATTAAAGCATCCATTGTTGG
TGTATTGTGGTTTATAGGTAACACATGGGTTGGATATACAGACGCTTTCA
TGAGTTTGACTAACGGTTGTGTATGGTTCGAATTTAACCCCATCTTTTCA
GCTCTTATTTGTTTGTGTCTATATGTGAAAAAAAACGTGAATTTTCGCGT
TTTCAAGATTTTACTGTTAATTCCTTTTGGTATGTTTGTATTtcatttaa
gatttttcttCTGTTGCATTTGTT Coding sequence (CDS) from alignment at sc0000345:99291..100464 >TCONS_00020009 ID=TCONS_00020009|Name=TCONS_00020009|organism=Clytia hemisphaerica|type=CDS|length=1041bp|location=Sequence derived from alignment at sc0000345:99291..100464 (Clytia hemisphaerica)
TCAATTTCCGTCTCGTTTCACAGACTGTCTCAGTGATATTTTTGTCAAAG
TGTTCGAATTGGAGtcttttgacattttcatttcataaaCATTGGAGGAA
CTCCTTACAGAACTGTTCCGTATACTGCTCCATGATTTCCGCATTGAGGA
ATTAAATTTATGCCGGACACTCGGTTTAGCAAACACGTGGCAGACCggtg
taataaaaatgacgaagATCCATAATCCATTGCTTAGGTATCCCATAATT
CTGTAGTTCTTTTCGGTTAGTTCGCCGACCACGTGGAAAGCATCCGAAAA
GGCTTGCGCGAGACACGTCACAAACAGAATGATGGATAGGAAAATAAATA
TTCTGTGTTCCGCTTTTCGGCGTTTCTTCGTTTTCCGGTCTAAATGTTTG
TAGCTAACGATCCGGTTTTTCCATTTCCGATACATTGAAATATATATGAA
AGGCTGGGGAAGAAGCAGCAATGTTTCGTTGATGATGTCGATCTTGAATA
ACGCACCAAGTTGTATGCTCGACCAGCCAATCAAAAACGGTGCACGGACT
GCTACAGTTATGAAAATAGTGACacaataatatttgaaaataagacTCCG
TGTGACCAGCTTCTTATATTTGAATGGTTTAAAGAATGCAATGAACCTAT
CAGTGGTCATTGCTACTAAGCTAAATACAAACATTTGATAAAGTCCTGTA
CACACGATAAATAAAAGTCGGTTAATTTGTCGCCGTGTGTTTAGATCTTC
AAACATGTAATGATTTCCCCACAAGAAAATGAAACAGAGATTCTCCACAA
AACAAATGGTAACCAAAATAGTGATAATCAGATTCTGTTTTGCATTATGA
CCAGTTCGGATTATCACCAAGACAACGGTACATAGTACTAAACCAAAAAA
TGATACCGAGCTAGCAACTATACTGAAAATTAAAGCATCCATTGTTGGTG
TATTGTGGTTTATAGGTAACACATGGGTTGGATATACAGACGCTTTCATG
AGTTTGACTAACGGTTGTGTATGGTTCGAATTTAACCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020009-exon-sc0000345-1491911889:99291..100464 | TCONS_00020009-exon-sc0000345-1491911889:99291..100464 | Clytia hemisphaerica | exon |
| TCONS_00020009-exon-sc0000345-1510915933:99291..100464 | TCONS_00020009-exon-sc0000345-1510915933:99291..100464 | Clytia hemisphaerica | exon |
| TCONS_00020009-exon-sc0000345-1575043694:99291..100464 | TCONS_00020009-exon-sc0000345-1575043694:99291..100464 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000345 | supercontig | sc0000345:99291..100464 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019430 | 7TM_GPCR_serpentine_rcpt_Srx |
Blast
The following BLAST results are available for this feature:
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