TCONS_00020008 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020008
Unique NameTCONS_00020008
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length374

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020008 ID=TCONS_00020008|Name=TCONS_00020008|organism=Clytia hemisphaerica|type=transcript|length=374bp
ATGGGGATCTGCTTTTTCCAATGTATACAGTAATATACTTTTCATATGAT
AGGATTTGATGCGATTACAAGTAATGGATAAATAATCTTTGGCGATGACC
TTGATGCCAAGAAAACACATCCGTGCCGTTTCAGGAATCAATTTAGACAA
TTCAACTTCGGCAGAAGAGAATGATAAACGCCATGTCGAGCCTGTACTGT
CATTTTTTTGAGATTTCGGTACGACATGACAACCTTCTTTAATAATTCTA
AGGACAACGTCATTAGAAGGCCATTTTCTATTTGCTCGATAACCCCAATC
ACTAATTGATGATGGccaatcaggaaatttcaaagcaaatgtAATATCAG
CATAAAGGCGGTTAGCTGAAACAT
Run BLAST on NCBI

protein sequence of TCONS_00020008-protein

>TCONS_00020008-protein ID=TCONS_00020008-protein|Name=TCONS_00020008-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
VSANRLYADITFALKFPDWPSSISDWGYRANRKWPSNDVVLRIIKEGCHV
VPKSQKNDSTGSTWRLSFSSAEVELSKLIPETARMCFLGIKVIAKDYLSI
TCNRIKSYHMKSILLYTLEKADPH
Run BLAST on NCBI

transcript from alignment at sc0000345:84986..85359

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020008 ID=TCONS_00020008|Name=TCONS_00020008|organism=Clytia hemisphaerica|type=transcript|length=374bp|location=Sequence derived from alignment at sc0000345:84986..85359 (Clytia hemisphaerica)
ATGTTTCAGCTAACCGCCTTTATGCTGATATTacatttgctttgaaattt
cctgattggCCATCATCAATTAGTGATTGGGGTTATCGAGCAAATAGAAA
ATGGCCTTCTAATGACGTTGTCCTTAGAATTATTAAAGAAGGTTGTCATG
TCGTACCGAAATCTCAAAAAAATGACAGTACAGGCTCGACATGGCGTTTA
TCATTCTCTTCTGCCGAAGTTGAATTGTCTAAATTGATTCCTGAAACGGC
ACGGATGTGTTTTCTTGGCATCAAGGTCATCGCCAAAGATTATTTATCCA
TTACTTGTAATCGCATCAAATCCTATCATATGAAAAGTATATTACTGTAT
ACATTGGAAAAAGCAGATCCCCAT

Coding sequence (CDS) from alignment at sc0000345:84986..85359

>TCONS_00020008 ID=TCONS_00020008|Name=TCONS_00020008|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at sc0000345:84986..85359 (Clytia hemisphaerica)
GTTTCAGCTAACCGCCTTTATGCTGATATTacatttgctttgaaatttcc
tgattggCCATCATCAATTAGTGATTGGGGTTATCGAGCAAATAGAAAAT
GGCCTTCTAATGACGTTGTCCTTAGAATTATTAAAGAAGGTTGTCATGTC
GTACCGAAATCTCAAAAAAATGACAGTACAGGCTCGACATGGCGTTTATC
ATTCTCTTCTGCCGAAGTTGAATTGTCTAAATTGATTCCTGAAACGGCAC
GGATGTGTTTTCTTGGCATCAAGGTCATCGCCAAAGATTATTTATCCATT
ACTTGTAATCGCATCAAATCCTATCATATGAAAAGTATATTACTGTATAC
ATTGGAAAAAGCAGATCCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011240XLOC_011240Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020008-exon-sc0000345-1491911889:84986..85359TCONS_00020008-exon-sc0000345-1491911889:84986..85359Clytia hemisphaericaexon
TCONS_00020008-exon-sc0000345-1510915933:84986..85359TCONS_00020008-exon-sc0000345-1510915933:84986..85359Clytia hemisphaericaexon
TCONS_00020008-exon-sc0000345-1575043694:84986..85359TCONS_00020008-exon-sc0000345-1575043694:84986..85359Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020008-proteinTCONS_00020008-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:84986..85359 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.430033	0	0	0	0	0.229132	0	1.03519	0.543571	1.3466	3.04977	0.2864	1.00101	0.891046	3.54071	5.37203	1.93695	3.63973	3.19994	2.63097	0.20789	0	1.23267	1.56895	2.53939	1.44222	0	0.314651	7.3982	3.64722
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024810Mab-21_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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