TCONS_00020005 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020005
Unique NameTCONS_00020005
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length533

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020005 ID=TCONS_00020005|Name=TCONS_00020005|organism=Clytia hemisphaerica|type=transcript|length=533bp
GCCAGAACTTGAACTCGGTAATTTCAACAACACCAAGAAATCGTCATCAG
CATCCAATATCTTCCCTAATATCCTCAAACGTCAAATAATTAAACATCAA
AGTTCTTCAAAACTCAACAGCAGAAACTCATCAGTCGTCACCAGCATGAA
GCTAGACCTGAATAGCTCCTCAATCAGTCACTTATTTTCAGGCGTCAACG
CTCCAATCAACTTTCTTTCTAATCGAAACAATCATCGACCTTCGACACAG
CTCGATCACGTCAATCAAAAATGTCTTCAAGTCCAGACAAGGGGAATCTC
CAAACATTCCAATATCAATCAAGAGTTTTCAATCACTCGTCATTCACATC
TAAATCACCGTCGCTATTGCAGCTTCATCAAAACTATGGTACATGCTTTC
AAGTTCTTCAAAGTGTTATTCCATTTGTCCTTCGAAATGGACAACCCTGT
ATCATCAGATATTCGACCTCAACTCAAAGTTCAGCAGATCATTGTCAAGC
CGAAATATCAAGCCATCGTCAAGAAAGTAGATC
Run BLAST on NCBI

protein sequence of TCONS_00020005-protein

>TCONS_00020005-protein ID=TCONS_00020005-protein|Name=TCONS_00020005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
PELELGNFNNTKKSSSASNIFPNILKRQIIKHQSSSKLNSRNSSVVTSMK
LDLNSSSISHLFSGVNAPINFLSNRNNHRPSTQLDHVNQKCLQVQTRGIS
KHSNINQEFSITRHSHLNHRRYCSFIKTMVHAFKFFKVLFHLSFEMDNPV
SSDIRPQLKVQQIIVKPKYQAIVKKVD
Run BLAST on NCBI

transcript from alignment at sc0000345:72759..73291

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020005 ID=TCONS_00020005|Name=TCONS_00020005|organism=Clytia hemisphaerica|type=transcript|length=533bp|location=Sequence derived from alignment at sc0000345:72759..73291 (Clytia hemisphaerica)
GATCTACTTTCTTGACGATGGCTTGATATTTCGGCTTGACAATGATCTGC
TGAACTTTGAGTTGAGGTCGAATATCTGATGATACAGGGTTGTCCATTTC
GAAGGACAAATGGAATAACACTTTGAAGAACTTGAAAGCATGTACCATAG
TTTTGATGAAGCTGCAATAGCGACGGTGATTTAGATGTGAATGACGAGTG
ATTGAAAACTCTTGATTGATATTGGAATGTTTGGAGATTCCCCTTGTCTG
GACTTGAAGACATTTTTGATTGACGTGATCGAGCTGTGTCGAAGGTCGAT
GATTGTTTCGATTAGAAAGAAAGTTGATTGGAGCGTTGACGCCTGAAAAT
AAGTGACTGATTGAGGAGCTATTCAGGTCTAGCTTCATGCTGGTGACGAC
TGATGAGTTTCTGCTGTTGAGTTTTGAAGAACTTTGATGTTTAATTATTT
GACGTTTGAGGATATTAGGGAAGATATTGGATGCTGATGACGATTTCTTG
GTGTTGTTGAAATTACCGAGTTCAAGTTCTGGC

Coding sequence (CDS) from alignment at sc0000345:72759..73291

>TCONS_00020005 ID=TCONS_00020005|Name=TCONS_00020005|organism=Clytia hemisphaerica|type=CDS|length=531bp|location=Sequence derived from alignment at sc0000345:72759..73291 (Clytia hemisphaerica)
ATCTACTTTCTTGACGATGGCTTGATATTTCGGCTTGACAATGATCTGCT
GAACTTTGAGTTGAGGTCGAATATCTGATGATACAGGGTTGTCCATTTCG
AAGGACAAATGGAATAACACTTTGAAGAACTTGAAAGCATGTACCATAGT
TTTGATGAAGCTGCAATAGCGACGGTGATTTAGATGTGAATGACGAGTGA
TTGAAAACTCTTGATTGATATTGGAATGTTTGGAGATTCCCCTTGTCTGG
ACTTGAAGACATTTTTGATTGACGTGATCGAGCTGTGTCGAAGGTCGATG
ATTGTTTCGATTAGAAAGAAAGTTGATTGGAGCGTTGACGCCTGAAAATA
AGTGACTGATTGAGGAGCTATTCAGGTCTAGCTTCATGCTGGTGACGACT
GATGAGTTTCTGCTGTTGAGTTTTGAAGAACTTTGATGTTTAATTATTTG
ACGTTTGAGGATATTAGGGAAGATATTGGATGCTGATGACGATTTCTTGG
TGTTGTTGAAATTACCGAGTTCAAGTTCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011237XLOC_011237Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020005-proteinTCONS_00020005-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020005-exon-sc0000345-1491911889:72759..73291TCONS_00020005-exon-sc0000345-1491911889:72759..73291Clytia hemisphaericaexon
TCONS_00020005-exon-sc0000345-1510915933:72759..73291TCONS_00020005-exon-sc0000345-1510915933:72759..73291Clytia hemisphaericaexon
TCONS_00020005-exon-sc0000345-1575043694:72759..73291TCONS_00020005-exon-sc0000345-1575043694:72759..73291Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:72759..73291 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.656995	1.92202	0.867864	0.121296	0.590663	0.350062	0.563114	0.395385	0.461364	0.914359	0.665624	0.145852	1.45649	2.04198	0.310886	0.93416	0.164401	0.674024	0.814801	0.365413	0.31761	0.929515	0.376649	0.684857	1.29321	0.734464	0	0.320478	1.21536	0.990604
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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