TCONS_00020003 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020003
Unique NameTCONS_00020003
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length217

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020003 ID=TCONS_00020003|Name=TCONS_00020003|organism=Clytia hemisphaerica|type=transcript|length=217bp
GGAACCATTTGGTACAACTCTGGGAGTTCGAGAATACTAAAATTCCAGGG
CTTTATACATGATCAAATTAACAAGAGAACACATCAACTAGATATGATGA
ACGTTTAAACTTGCAGCTCAGTGGCTGACggatacatttttgaaaaatga
gaaaacagaGGCACCTACACCTGGCttgcaaaagaagaaagaaaaaagga
gACTGTACCTGGCTATT
Run BLAST on NCBI

transcript from alignment at sc0000345:345811..346374-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020003 ID=TCONS_00020003|Name=TCONS_00020003|organism=Clytia hemisphaerica|type=transcript|length=564bp|location=Sequence derived from alignment at sc0000345:345811..346374- (Clytia hemisphaerica)
GGAACCATTTGGTACAACTCTGGGAGTTCGAGAATACTAAAATTCCAGGG
CTTTATACATGATCAAATTAACAAGAGAACACATCAACTAGATATGATGA
ACGTTTAAACTTGCAGCTCAGGCAGGTAACTTAGACGATTACCATATTAA
CTCAAAAAATGTGCCTATATGTTATCTAATCAGGCTAGGTAAATTCTGAG
AATTAGGTCTGTCTGAAATAAAATGGCCTTCTTATGACAATAAAAATCAC
ATGATATGTATTCAGTTGTTATCAATGACATTGAAATAGCTACAAGTCTG
GTTTCGATAATTTTAGTTTGATGACTAGCTTGATATAAACAGAAATTTTT
GAATAATTTTTCTTGGCTCAACATCAAAACTTCTTGAGTGGTGGTTTTAG
TGTCTCAGTACTAGAGTCACAAGGTTCACTTGTGTGTTGTTACCAAATTA
TAACACTAATCATTTTAGTGGCTGACGGATACATTTTTGAAAAATGAGAA
AACAGAGGCACCTACACCTGGCTTGCAAAAGAAGAAAGAAAAAAGGAGAC
TGTACCTGGCTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011235XLOC_011235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020003-exon-sc0000345-1575043694:346254..346374TCONS_00020003-exon-sc0000345-1575043694:346254..346374Clytia hemisphaericaexon
TCONS_00020003-exon-sc0000345-1575043694:345811..345906TCONS_00020003-exon-sc0000345-1575043694:345811..345906Clytia hemisphaericaexon
TCONS_00020003-exon-sc0000345-1510915933:346254..346374TCONS_00020003-exon-sc0000345-1510915933:346254..346374Clytia hemisphaericaexon
TCONS_00020003-exon-sc0000345-1510915933:345811..345906TCONS_00020003-exon-sc0000345-1510915933:345811..345906Clytia hemisphaericaexon
TCONS_00020003-exon-sc0000345-1491911889:346254..346374TCONS_00020003-exon-sc0000345-1491911889:346254..346374Clytia hemisphaericaexon
TCONS_00020003-exon-sc0000345-1491911889:345811..345906TCONS_00020003-exon-sc0000345-1491911889:345811..345906Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:345811..346374 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	5.24298	6.90512	3.33229	1.55983	1.09207	0	6.52604	0.360845	0.861895	0	5.56918	4.73829	0.972864	1.99431	5.36197	11.2388	2.50599	1.8335	1.48591	1.35091	0	0	7.10801	1.89647	5.75361	5.86202
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020003 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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