TCONS_00019999 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019999
Unique NameTCONS_00019999
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019999 ID=TCONS_00019999|Name=TCONS_00019999|organism=Clytia hemisphaerica|type=transcript|length=1589bp
TCCCAAGGCACTTTTCACTAATGTGCTCATATCCCATTGATAACATCCTC
TCTGGTTTGAAGGCAGTTTTGTTAGCAAAATGGACTGGACTCTTTGGATC
TATCTTGTACTTATTTTGTTCCTCATCAAAGATGCTTCAACAAGAATCGT
CAAATCAACACCTACTCCTAATAAACCATTGATCACTTCAATATCACCTT
TAACAACCGTCAAATCTCCTCCAAAGAATTCGTGTGGTGTTCCAAAAATC
CCCTATGTCCGTATTATAGGAGGAAGTAACGCAACCAAAGGAAGTTGGCC
TTGGCAAGTTGGATTGGTGTATAAAGGAACTTTGTATTGTGGAGGGACGA
TTATCAACCCAACAACAATCCTTACTGCAGCTCACTGTGTTGAATATATG
GCACCAGAATCCATTTCTATTAAAGTTGGCGCACACGACCTGAACGATTC
TTCAAACGAGCAACTGTTTAACATAACGACTTACAAAATGCACGAAGGTT
ACGACCCTAAAGATTATCCTAACGACATTGCAATCGTAAAACTAAAAGGT
GCTATCAAGTTTGGTACATATGTTCAACCTGTATGTTTACCGAGAGCCAA
ACATGTCATTGCCGTTGGAGCGACTTGCTACACCACAGGTTGGGGATACA
CGACACCAGCAGAAGATCAGCGTCCACAGACTCTTCAACAACTCAAGGTT
AACATCATTAACAACACTGAGTGTCAACGTAAAAATGGTGTCTTCGCTAC
CGTAACTAAAGACATGGCCTGTGCGGTCAAATACGATCACGCGGATGCCT
CAACCAACCGCCTCATCTGTGGCGGAGACTCGGGTGGACCACTTGTCTGT
TTAGATAAACATCAACGTTGGAAACTTCATGGCGTGGTCAACTGGGCAGC
ACCCATTTGTGATAGTCGATACTCGTATTCCGTTTTCGCGCGTGTGACCC
ATCATAGACATTGGATTGATCAGAATATCTAAGTGATGGGAATACAGttg
acgttctctaattcgaggttctactattcgatacacctatttttcgataa
atttgaaagtccccgtcaacaagaacaCTCATAATCGACGTTCCACAATT
CGACACGCTCCCTTCAGTTATTGAAAATcgaattccccttgaaaatcgaa
gtAGAGAGACTTGACTGTACTTCAAAATGTAAACTCATATAAAGAATTAT
CATTAGGTAGATAAATAACggtaaacaaaacaaacaacagTTTCTTATCA
ATGAATGTGGCAGTTATTTCTATAGTTGTCGTCCCAAAAGGGGGCATTCT
TTTGATTCGGTTAGTTTCTCGCCAGGAATAGTTCAGCTTGTTTCTTCTTG
CCATAGCCATTGGGAAatgcaccttttcgaccgtagccgccaattacaGC
GCAGTCATTTTTTGTCTGCTTTAtattgtcgtcatggttacttttctctg
cgttgattgcgcgctgaatagaatctggattggtcggcacaggtcgatat
atgatttcggcctgtgcttttcacggtaatgAAATAAGCAACAGGCCACC
aacaaattattttcaatatatCAATCGATTCAAGACTTA
Run BLAST on NCBI

protein sequence of TCONS_00019999-protein

>TCONS_00019999-protein ID=TCONS_00019999-protein|Name=TCONS_00019999-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MDWTLWIYLVLILFLIKDASTRIVKSTPTPNKPLITSISPLTTVKSPPKN
SCGVPKIPYVRIIGGSNATKGSWPWQVGLVYKGTLYCGGTIINPTTILTA
AHCVEYMAPESISIKVGAHDLNDSSNEQLFNITTYKMHEGYDPKDYPNDI
AIVKLKGAIKFGTYVQPVCLPRAKHVIAVGATCYTTGWGYTTPAEDQRPQ
TLQQLKVNIINNTECQRKNGVFATVTKDMACAVKYDHADASTNRLICGGD
SGGPLVCLDKHQRWKLHGVVNWAAPICDSRYSYSVFARVTHHRHWIDQNI
Run BLAST on NCBI

transcript from alignment at sc0000345:182585..188047-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019999 ID=TCONS_00019999|Name=TCONS_00019999|organism=Clytia hemisphaerica|type=transcript|length=5463bp|location=Sequence derived from alignment at sc0000345:182585..188047- (Clytia hemisphaerica)
TCCCAAGGCACTTTTCACTAATGTGCTCATATCCCATTGATAACATCCTC
TCTGGTTTGAAGGCAGTTTTGTTAGCAAAATGGACTGGACTCTTTGGATC
TATCTTGTACTTATTTTGTTCCTCATCAAAGGTAACTTTTTGAATAACAA
TATTTTGTCTTGTTAAAGCTCACATGCAGTCAACTATCGATGGGTCAATC
ACCCATATTACATTATTTTTTAGTTGTGCTTCTTTTAACACGCCAGTCTG
TAATAAATGCCATTTGCTTTAAGCATAGTCATTATAAAAAACACCGGTCT
GGAAGGCTTTTGTCTCTTTTTATTGTTAAAAGATGGAGCTTACGTACCAA
AATCGATTTATTTTGCAAACTTTTTGATCATGTGATTAGAAAATAGACCA
ATCCCAAGAAGCGATTTTGGTAACGTGATCAAAAAGTATGCAAATCGCAA
CTTGTCTTTAGTTTGTAACAAAAGAAATTTAAACATAAAGCTACTTGTAT
AGCGTAGCAAGTGTCCTTGCATTGCCAGACTGGGTTTTTTTATAATGACT
ATGCTTTAAGTGTGCACACCACTTTCTATGGATTAGCTATGGACTAAAGG
CGCAAGTAAGATATTAAATCATTGACGTTATCTAACAGTCGAGGTCGATG
TTCTTAAGTTTCAACGTTCATCTAACGTTGCTTCAACGTTCATTGAACGT
TATATGGACATTATGAACGTTAAATAAACGTTGAAACAACATTTTGTGCC
AGCTGGGTCATTATCAAATTTGTTATTCGAACAGATGCTTCAACAAGAAT
CGTCAAATCAACACCTACTCCTAATAAACCATTGATCACTTCAATATCAC
CTTTAACAACCGTCAAATCTCCTCCAAAGAATTCGTGTGGTGTTCCAAAA
ATCCCCTATGTCCGTATTATAGGAGGAAGTAACGCAACCAAAGGAAGTTG
GCCTTGGCAAGTTGGATTGGTGTATAAAGGTGACAGCTATATTCTCTTAC
AGTTGATTTATGTTTACTTTGCGTTTGCTGTAACCCTTTTCGTACGGAGT
GGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNACAAACTTGTAAAACAATTGAACAATCAAAATT
AGCCATATTTGGTTTGATTTTTTATTTTGACATGTGACATTTGTTTTGAT
TTTGTATCTGCTACATACAGTTTGTTTACAAATTTCGCAAGTACTGTTAT
GTCCCTTTAAGCCGGAATTTATTGAATATTTAGGATAAAATAAGACTTTT
AAACTCAGAGAACCTTTTTCTAAAGCTTTTTTTAGAATACAACAACACCC
GCTTCTCACCAGACCCGGTAGGATTTTTTCAGCCAGTGGAGATAAACATA
AGGGACTTAAACTGGATACTCTTAGCTTCCAAATAAACGCCCCCCAACCG
CTTGTTAATTTTTCGAAAATTTTCCAACCCCCCCAGACCTTATTAGGACG
CCCCCCCGTTAATTAATTTTGAGAATATTTTCAGGTGTCAAAGAGAAGGC
CCCTTATTTTGCTCTTGAAAGCCTGATTTTAGCCTATATTTACCTTATTT
TTGGGTTTTCAGAAATACAATGAATTTCCAACCCCCCCGGCAATTACGCC
CCCCCCCCCCGTTTATTAAAATTTCGAAAATTTTCCCCCCCCCCCCCCGT
TTTTTCGACCCCCCCCCCCCCCCGTTTATTTGGAACCTAAGAGTAGGGAT
TGATATTCCCATATTTTTTATGGCTGGGGATTTCAATTCTTTTGTTTTCA
AGTTAGAAAATTCAGTGGGGATGGATGGGGATAGCATTGCATTTTGTAGT
GAGGATTGGTTTATTTGATTATTTTCAGTAGGGACAAATACTGGAGGATA
ATCTTCCACCGGGGACGATGTTTTGGGCAATTTTTGCAATGTGAAGGGTT
CCAAGATGGCCTGTGAGAAGGCGGTGTACAATTGCTTTGACCTATTTAAG
AAAAAGCATCTGAATGGAACGATCTTGCATCATTTTTATTACTTAGGAAC
TTTGTATTGTGGAGGGACGATTATCAACCCAACAACAATCCTTACTGCAG
CTCACTGTGTTGAATATATGGCACCAGAATCCATTTCTATTAAAGTTGGT
GAGTATCGAGAAACATTTGACATTCTTTCGACGAAGAGTTATCCTCAGAG
GTTACAAAACCTTTTTTGAATAACTTTGACATGGTATAGTACTCTCTAAT
TTGACACTCTACCACTCGATACACCCCTTTATTCGATGAAAATCCAATGT
AGCCTTTGAAAATTGAATTATAGAGCGTCAAATGTAATTACTTGCCAACA
ATAATACTAGGTTGAAATTCATCACGGTGAGTGAAAGGATCCTCGTTGAT
CCTATAATAGAACTATACAAGACAAAGATAAAAAACAGCTAGTCTGTTTA
TCCATTTTGACAACTGGATGACAGTTGAGGGTCAGATATAATCTCAAAGG
TATTTTGTAGAGCTAGAGGTCAGTAAACCTGTGAAATATAATACACTTTT
TCGACCGTAGCCGCCGATTGCCGCGCGGGAATTTTTTGTCCGCTTTATCC
CACTAAAACAATCCCAGTCCTTTTTTCGCACCTAGCAGACAATAGAAAAA
TGTGTCAAAAAAGGATTACGCGCCTGTCCGCGCGAATACAGTCGAAATGG
TGTATTCTAAGATGACATTTTACAACTTTTCATTTCTTGTAATTATAAAT
ATCTTTCAAGGCGCACACGACCTGAACGATTCTTCAAACGAGCAACTGTT
TAACATAACGACTTACAAAATGCACGAAGGTTACGACCCTAAAGATTATC
CTAACGACATTGCAATCGTAAAACTAAAAGGTGCTATCAAGTTTGGTACA
TATGTTCAACCTGTATGTTTACCGAGAGCCAAACATGTCATTGCCGTTGG
AGCGACTTGCTACACCACAGGTTTCTATTCCTTATTCAATTTCCCCTTTT
ATCTCCAACAGCCACTTTTTATTTTACTGCGATAGACGTTGGATCAATCG
CGTGCGTGTCAATAAATAATAATGATGCCGTTGTTGGTTCTTATTTCTTC
GACGCTCAAATTGTTCACATGTTCTTAAAAGTTTTGATAAAAATAACCCT
TATATAGAGCGGTTCATAGGCGTAGCGAGATACCTTGCAAAATTTATGGA
TGAGAGCGGTTTTTACGACACTGTAATTATATCTTTGTTTTATCAAAAGA
TAATGAATATGTCATAAACGTCTGCACTCCCTCACAAATTTTGCAGGGTA
TCTCGCTACGCCTATGGCGGTTGGCAAACTGATTTCTTCAACTCCACAGA
TTGCAAAATAGACTTGTGCTTTCTGAGTGTTAAATTGAGCGCTATTGCTA
TCATAATCATAAAAAACCAAACTAAGAGACTTGGGCTTACCATTGTATAC
AGTGTGTCACGGAAAACCGAATCATAATTTACATAAATTTCTAAACTATT
GAAATATCTTAAGCATTGGATTGGATAAAAGAGAATTTTGAACCAAATGT
AAAAATCAAGGTGTATATTTTTTAGGATTTTTTATGGAATCGTTCCATTC
TTTACTAGGGTATATAGGTAATAGGGAAAACTAGAGAATCTCGAGCATTG
CAAACTAAAATACTGGATAGTAATCTGTATCTTAATGAAGAACCGAAAAG
GCATTAGGAAAGTAAATAAGAATATTGAAAGTCTGTAGTATTGATTTCGT
CAGCATGTATAGAACGTCTTTTTTTCACTAAAAAAACATTCTAAAGACCC
CCTCTTAAATGTCGAATCTAAAGTAGAATAGCAATGAATAAATTGATAGT
TTTTCCCAACAGGTTGGGGATACACGACACCAGCAGAAGATCAGCGTCCA
CAGACTCTTCAACAACTCAAGGTTAACATCATTAACAACACTGAGTGTCA
ACGTAAAAATGGTGTCTTCGCTACCGTAACTAAAGACATGGCCTGTGCGG
TCAAATACGATCACGCGGATGCCTCAACCAACCGCCTCATCTGTGGCGGA
GACTCGGGTGGACCACTTGTCTGTTTAGATAAACATCAACGTTGGAAACT
TCATGGCGTGGTCAACTGGGCAGCACCCATTTGTGATAGTCGATACTCGT
ATTCCGTTTTCGCGCGTGTGACCCATCATAGACATTGGATTGATCAGAAT
ATCTAAGTGATGGGAATACAGTTGACGTTCTCTAATTCGAGGTTCTACTA
TTCGATACACCTATTTTTCGATAAATTTGAAAGTCCCCGTCAACAAGAAC
ACTCATAATCGACGTTCCACAATTCGACACGCTCCCTTCAGTTATTGAAA
ATCGAATTCCCCTTGAAAATCGAAGTAGAGAGACTTGACTGTACTTCAAA
ATGTAAACTCATATAAAGAATTATCATTAGGTAGATAAATAACGGTAAAC
AAAACAAACAACAGTTTCTTATCAATGAATGTGGCAGTTATTTCTATAGT
TGTCGTCCCAAAAGGGGGCATTCTTTTGATTCGGTTAGTTTCTCGCCAGG
AATAGTTCAGCTTGTTTCTTCTTGCCATAGCCATTGGGAAATGCACCTTT
TCGACCGTAGCCGCCAATTACAGCGCAGTCATTTTTTGTCTGCTTTATAT
TGTCGTCATGGTTACTTTTCTCTGCGTTGATTGCGCGCTGAATAGAATCT
GGATTGGTCGGCACAGGTCGATATATGATTTCGGCCTGTGCTTTTCACGG
TAATGAAATAAGCAACAGGCCACCAACAAATTATTTTCAATATATCAATC
GATTCAAGACTTA

Coding sequence (CDS) from alignment at sc0000345:182585..188047-

>TCONS_00019999 ID=TCONS_00019999|Name=TCONS_00019999|organism=Clytia hemisphaerica|type=CDS|length=4515bp|location=Sequence derived from alignment at sc0000345:182585..188047- (Clytia hemisphaerica)
GTTGGGGATACACGACACCAGCAGAAGATCAGCGTCCACAGACTCTTCAA
CAACTCAAGGTTAACATCATTAACAACACTGAGTGTCAACGTAAAAATGG
TGTCTTCGCTACCGTAACTAAAGACATGGCCTGTGCGGTCAAATACGATC
ACGCGGATGCCTCAACCAACCGCCTCATCTGTGGCGGAGACTCGGGTGGA
CCACTTGTCTGTTTAGATAAACATCAACGTTGGAAACTTCATGGCGTGGT
CAACTGGGCAGCACCCATTTGTGATAGTCGATACTCGTATTCCGTTTTCG
CGCGTGTGACCCATCATAGACATTGGATTGATCAGAATATCTAAGCGCAC
ACGACCTGAACGATTCTTCAAACGAGCAACTGTTTAACATAACGACTTAC
AAAATGCACGAAGGTTACGACCCTAAAGATTATCCTAACGACATTGCAAT
CGTAAAACTAAAAGGTGCTATCAAGTTTGGTACATATGTTCAACCTGTAT
GTTTACCGAGAGCCAAACATGTCATTGCCGTTGGAGCGACTTGCTACACC
ACAGGAACTTTGTATTGTGGAGGGACGATTATCAACCCAACAACAATCCT
TACTGCAGCTCACTGTGTTGAATATATGGCACCAGAATCCATTTCTATTA
AAGTTGATGCTTCAACAAGAATCGTCAAATCAACACCTACTCCTAATAAA
CCATTGATCACTTCAATATCACCTTTAACAACCGTCAAATCTCCTCCAAA
GAATTCGTGTGGTGTTCCAAAAATCCCCTATGTCCGTATTATAGGAGGAA
GTAACGCAACCAAAGGAAGTTGGCCTTGGCAAGTTGGATTGGTGTATAAA
GATGGACTGGACTCTTTGGATCTATCTTGTACTTATTTTGTTCCTCATCA
AAGGTTGGGGATACACGACACCAGCAGAAGATCAGCGTCCACAGACTCTT
CAACAACTCAAGGTTAACATCATTAACAACACTGAGTGTCAACGTAAAAA
TGGTGTCTTCGCTACCGTAACTAAAGACATGGCCTGTGCGGTCAAATACG
ATCACGCGGATGCCTCAACCAACCGCCTCATCTGTGGCGGAGACTCGGGT
GGACCACTTGTCTGTTTAGATAAACATCAACGTTGGAAACTTCATGGCGT
GGTCAACTGGGCAGCACCCATTTGTGATAGTCGATACTCGTATTCCGTTT
TCGCGCGTGTGACCCATCATAGACATTGGATTGATCAGAATATCTAAGCG
CACACGACCTGAACGATTCTTCAAACGAGCAACTGTTTAACATAACGACT
TACAAAATGCACGAAGGTTACGACCCTAAAGATTATCCTAACGACATTGC
AATCGTAAAACTAAAAGGTGCTATCAAGTTTGGTACATATGTTCAACCTG
TATGTTTACCGAGAGCCAAACATGTCATTGCCGTTGGAGCGACTTGCTAC
ACCACAGGAACTTTGTATTGTGGAGGGACGATTATCAACCCAACAACAAT
CCTTACTGCAGCTCACTGTGTTGAATATATGGCACCAGAATCCATTTCTA
TTAAAGTTGATGCTTCAACAAGAATCGTCAAATCAACACCTACTCCTAAT
AAACCATTGATCACTTCAATATCACCTTTAACAACCGTCAAATCTCCTCC
AAAGAATTCGTGTGGTGTTCCAAAAATCCCCTATGTCCGTATTATAGGAG
GAAGTAACGCAACCAAAGGAAGTTGGCCTTGGCAAGTTGGATTGGTGTAT
AAAGATGGACTGGACTCTTTGGATCTATCTTGTACTTATTTTGTTCCTCA
TCAAAGGTTGGGGATACACGACACCAGCAGAAGATCAGCGTCCACAGACT
CTTCAACAACTCAAGGTTAACATCATTAACAACACTGAGTGTCAACGTAA
AAATGGTGTCTTCGCTACCGTAACTAAAGACATGGCCTGTGCGGTCAAAT
ACGATCACGCGGATGCCTCAACCAACCGCCTCATCTGTGGCGGAGACTCG
GGTGGACCACTTGTCTGTTTAGATAAACATCAACGTTGGAAACTTCATGG
CGTGGTCAACTGGGCAGCACCCATTTGTGATAGTCGATACTCGTATTCCG
TTTTCGCGCGTGTGACCCATCATAGACATTGGATTGATCAGAATATCTAA
GCGCACACGACCTGAACGATTCTTCAAACGAGCAACTGTTTAACATAACG
ACTTACAAAATGCACGAAGGTTACGACCCTAAAGATTATCCTAACGACAT
TGCAATCGTAAAACTAAAAGGTGCTATCAAGTTTGGTACATATGTTCAAC
CTGTATGTTTACCGAGAGCCAAACATGTCATTGCCGTTGGAGCGACTTGC
TACACCACAGGAACTTTGTATTGTGGAGGGACGATTATCAACCCAACAAC
AATCCTTACTGCAGCTCACTGTGTTGAATATATGGCACCAGAATCCATTT
CTATTAAAGTTGATGCTTCAACAAGAATCGTCAAATCAACACCTACTCCT
AATAAACCATTGATCACTTCAATATCACCTTTAACAACCGTCAAATCTCC
TCCAAAGAATTCGTGTGGTGTTCCAAAAATCCCCTATGTCCGTATTATAG
GAGGAAGTAACGCAACCAAAGGAAGTTGGCCTTGGCAAGTTGGATTGGTG
TATAAAGATGGACTGGACTCTTTGGATCTATCTTGTACTTATTTTGTTCC
TCATCAAAGGTTGGGGATACACGACACCAGCAGAAGATCAGCGTCCACAG
ACTCTTCAACAACTCAAGGTTAACATCATTAACAACACTGAGTGTCAACG
TAAAAATGGTGTCTTCGCTACCGTAACTAAAGACATGGCCTGTGCGGTCA
AATACGATCACGCGGATGCCTCAACCAACCGCCTCATCTGTGGCGGAGAC
TCGGGTGGACCACTTGTCTGTTTAGATAAACATCAACGTTGGAAACTTCA
TGGCGTGGTCAACTGGGCAGCACCCATTTGTGATAGTCGATACTCGTATT
CCGTTTTCGCGCGTGTGACCCATCATAGACATTGGATTGATCAGAATATC
TAAGCGCACACGACCTGAACGATTCTTCAAACGAGCAACTGTTTAACATA
ACGACTTACAAAATGCACGAAGGTTACGACCCTAAAGATTATCCTAACGA
CATTGCAATCGTAAAACTAAAAGGTGCTATCAAGTTTGGTACATATGTTC
AACCTGTATGTTTACCGAGAGCCAAACATGTCATTGCCGTTGGAGCGACT
TGCTACACCACAGGAACTTTGTATTGTGGAGGGACGATTATCAACCCAAC
AACAATCCTTACTGCAGCTCACTGTGTTGAATATATGGCACCAGAATCCA
TTTCTATTAAAGTTGATGCTTCAACAAGAATCGTCAAATCAACACCTACT
CCTAATAAACCATTGATCACTTCAATATCACCTTTAACAACCGTCAAATC
TCCTCCAAAGAATTCGTGTGGTGTTCCAAAAATCCCCTATGTCCGTATTA
TAGGAGGAAGTAACGCAACCAAAGGAAGTTGGCCTTGGCAAGTTGGATTG
GTGTATAAAGATGGACTGGACTCTTTGGATCTATCTTGTACTTATTTTGT
TCCTCATCAAAGGTTGGGGATACACGACACCAGCAGAAGATCAGCGTCCA
CAGACTCTTCAACAACTCAAGGTTAACATCATTAACAACACTGAGTGTCA
ACGTAAAAATGGTGTCTTCGCTACCGTAACTAAAGACATGGCCTGTGCGG
TCAAATACGATCACGCGGATGCCTCAACCAACCGCCTCATCTGTGGCGGA
GACTCGGGTGGACCACTTGTCTGTTTAGATAAACATCAACGTTGGAAACT
TCATGGCGTGGTCAACTGGGCAGCACCCATTTGTGATAGTCGATACTCGT
ATTCCGTTTTCGCGCGTGTGACCCATCATAGACATTGGATTGATCAGAAT
ATCTAAGCGCACACGACCTGAACGATTCTTCAAACGAGCAACTGTTTAAC
ATAACGACTTACAAAATGCACGAAGGTTACGACCCTAAAGATTATCCTAA
CGACATTGCAATCGTAAAACTAAAAGGTGCTATCAAGTTTGGTACATATG
TTCAACCTGTATGTTTACCGAGAGCCAAACATGTCATTGCCGTTGGAGCG
ACTTGCTACACCACAGGAACTTTGTATTGTGGAGGGACGATTATCAACCC
AACAACAATCCTTACTGCAGCTCACTGTGTTGAATATATGGCACCAGAAT
CCATTTCTATTAAAGTTGATGCTTCAACAAGAATCGTCAAATCAACACCT
ACTCCTAATAAACCATTGATCACTTCAATATCACCTTTAACAACCGTCAA
ATCTCCTCCAAAGAATTCGTGTGGTGTTCCAAAAATCCCCTATGTCCGTA
TTATAGGAGGAAGTAACGCAACCAAAGGAAGTTGGCCTTGGCAAGTTGGA
TTGGTGTATAAAGATGGACTGGACTCTTTGGATCTATCTTGTACTTATTT
TGTTCCTCATCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011232XLOC_011232Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019999-exon-sc0000345-1575043694:187917..188047TCONS_00019999-exon-sc0000345-1575043694:187917..188047Clytia hemisphaericaexon
TCONS_00019999-exon-sc0000345-1575043694:187069..187263TCONS_00019999-exon-sc0000345-1575043694:187069..187263Clytia hemisphaericaexon
TCONS_00019999-exon-sc0000345-1575043694:185250..185351TCONS_00019999-exon-sc0000345-1575043694:185250..185351Clytia hemisphaericaexon
TCONS_00019999-exon-sc0000345-1575043694:184428..184637TCONS_00019999-exon-sc0000345-1575043694:184428..184637Clytia hemisphaericaexon
TCONS_00019999-exon-sc0000345-1575043694:182585..183535TCONS_00019999-exon-sc0000345-1575043694:182585..183535Clytia hemisphaericaexon
TCONS_00019999-exon-sc0000345-1510915933:187917..188047TCONS_00019999-exon-sc0000345-1510915933:187917..188047Clytia hemisphaericaexon
TCONS_00019999-exon-sc0000345-1510915933:187069..187263TCONS_00019999-exon-sc0000345-1510915933:187069..187263Clytia hemisphaericaexon
TCONS_00019999-exon-sc0000345-1510915933:185250..185351TCONS_00019999-exon-sc0000345-1510915933:185250..185351Clytia hemisphaericaexon
TCONS_00019999-exon-sc0000345-1510915933:184428..184637TCONS_00019999-exon-sc0000345-1510915933:184428..184637Clytia hemisphaericaexon
TCONS_00019999-exon-sc0000345-1510915933:182585..183535TCONS_00019999-exon-sc0000345-1510915933:182585..183535Clytia hemisphaericaexon
TCONS_00019999-exon-sc0000345-1491911889:187917..188047TCONS_00019999-exon-sc0000345-1491911889:187917..188047Clytia hemisphaericaexon
TCONS_00019999-exon-sc0000345-1491911889:187069..187263TCONS_00019999-exon-sc0000345-1491911889:187069..187263Clytia hemisphaericaexon
TCONS_00019999-exon-sc0000345-1491911889:185250..185351TCONS_00019999-exon-sc0000345-1491911889:185250..185351Clytia hemisphaericaexon
TCONS_00019999-exon-sc0000345-1491911889:184428..184637TCONS_00019999-exon-sc0000345-1491911889:184428..184637Clytia hemisphaericaexon
TCONS_00019999-exon-sc0000345-1491911889:182585..183535TCONS_00019999-exon-sc0000345-1491911889:182585..183535Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019999-proteinTCONS_00019999-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:182585..188047 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0344312	0.0924901	0.219945	0.257121	0.104008	0.0821886	0.109024	0.0928296	0.077047	0.0293303	0.0520923	0.0684869	2.71385	2.73214	0.598543	1.2157	0.338913	0.122424	4.53162	4.58203	1.45104	1.536	4.32652	5.9328	9.40376	7.99774	0.226713	0.60335	1.13933	1.04659
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
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BLAST of TCONS_00019999 vs. Swiss-Prot (Human)
Match: OVCH1 (Ovochymase-1 OS=Homo sapiens GN=OVCH1 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 7.666e-42
Identity = 99/270 (36.67%), Postives = 142/270 (52.59%), Query Frame = 2 
Query:  194 SPLTTVKSPPKNSCGVPKIP----YVRIIGGSNATKGSWPWQVGLVYKGTLYCGGTIINPTTILTAAHCVEYM-APESISIKVGAHDLN-DSSNEQLFNITTYKMHEGYDPKDYPNDIAIVKLKGAIKFGTYVQPVCLPRAKHVIAVGATCYTTGWGYTTPAEDQRPQTLQQLKVNIINNTECQRK--NGVFATVTKDMACAVKYDHADASTNRLICGGDSGGPLVCLDKHQRWKLHGVVNWAAPICDSRYSYSVFARVTHHRHWIDQNI 979
            +P++TVK+   + CG+P         RI GG  A    WPWQVGL + G   CGG IINP  ILTAAHCV+    P S +I  G HD N   S EQ+       +HE ++   Y +DIA+++L   +++ + V+PVCLP +   +     C  TGWG +  A+      LQQ++V+++    C+    +     +T+ M CA       AS  +  C GDSGGPLVC  ++  + L+G+V+W A  C   +   VFARV     WI   I
Sbjct:  548 NPVSTVKAILHDVCGIPPFSPQWLSRRIAGGEEACPHCWPWQVGLRFLGDYQCGGAIINPVWILTAAHCVQLKNNPLSWTIIAGDHDRNLKESTEQVRRAKHIIVHEDFNTLSYDSDIALIQLSSPLEYNSVVRPVCLPHSAEPLFSSEICAVTGWG-SISADGGLASRLQQIQVHVLEREVCEHTYYSAHPGGITEKMICA----GFAASGEKDFCQGDSGGPLVCRHENGPFVLYGIVSWGAG-CVQPWKPGVFARVMIFLDWIQSKI 811

HSP 2 Score: 119.013 bits (297), Expect = 4.647e-28
Identity = 78/259 (30.12%), Postives = 132/259 (50.97%), Query Frame = 2 
Query:  254 YVRIIGGSNATKGSWPWQVGLVYKGTLYCGGTIINPTTILTAAHCVEYMAPE---SISIKVGAHDL-NDSSNEQLFNITTYKMHEGYDPKDYPN-DIAIVKLKGAIKFGTYVQPVCLPRAKHVIAVGATCYTTGWGYTTPAEDQRPQTLQQLKVNIINNTECQR--KNGVFATVTKDMACAVKYDHA-DASTNRLICGGDSGGPLVCLDKHQRWKLHGVVNWAA-------PICDS--RYSYSVFARVTHHRHWIDQNI 979
            + RI    N+T    PWQV L      +CGG++I    ++TAAHC++ ++ +   +I++  G + L      EQ   ++    H  Y+ ++Y + DIA++ LK  +KFG  VQP+CLP +   +  G  C ++GWG  +   +     LQ++++ I+++  C    K+     + + M CA   D   DA      C GDSGGPLVC      W L G+ +W A       P+ ++  + S  +F++V+    +I QN+
Sbjct:   44 FSRISSWRNSTVTGHPWQVSLKSDEHHFCGGSLIQEDRVVTAAHCLDSLSEKQLKNITVTSGEYSLFQKDKQEQNIPVSKIITHPEYNSREYMSPDIALLYLKHKVKFGNAVQPICLPDSDDKVEPGILCLSSGWGKISKTSEYS-NVLQEMELPIMDDRACNTVLKSMNLPPLGRTMLCAGFPDWGMDA------CQGDSGGPLVCRRGGGIWILAGITSWVAGCAGGSVPVRNNHVKASLGIFSKVSELMDFITQNL 295
The following BLAST results are available for this feature:
BLAST of TCONS_00019999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OVCH17.666e-4236.67Ovochymase-1 OS=Homo sapiens GN=OVCH1 PE=2 SV=2[more]
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