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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019993 ID=TCONS_00019993|Name=TCONS_00019993|organism=Clytia hemisphaerica|type=transcript|length=1600bpRun BLAST on NCBI transcript from alignment at sc0000345:105762..112963- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019993 ID=TCONS_00019993|Name=TCONS_00019993|organism=Clytia hemisphaerica|type=transcript|length=7202bp|location=Sequence derived from alignment at sc0000345:105762..112963- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00019993 vs. Swiss-Prot (Human)
Match: PXDN (Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2) HSP 1 Score: 144.05 bits (362), Expect = 6.370e-36 Identity = 107/404 (26.49%), Postives = 166/404 (41.09%), Query Frame = 3
Query: 297 GSTATFHCNIDSFPTANITWKLNKEPINIVETERYESLIPSVLSVKKVSAEDQGVYRCEVRNIYGWY-WRESKLAAMEPPSISYDRTNISITDAATVRKRVRITIGGSLIVMKGMNIIIRCPAMGIPEPKITWNKVNRT-TPLDSRIYVTHDNDLMITSGRVSDSGVWQCRAKNKVGEAIGQSVIAVADKPTAVVYPDFRNDKDGRTSLVSIARQNLVIPTGKLIRLKCHVTGSPEPKVTWLKGHDIIRESDRHKVVGK-QLEIKGAKVEDVGAYLCMAENVMGATTAFTEITIGIPPRIDRTTRRNSTVVDGRKHVSFNIGTSRTIPVGATVRIYCNSTGLPKPSISWISEKGGGRKKTRTRIQSDLPDIITIRDFSKRDEGTYECQVRNYIGNDRARSTLAL 1499
G+T F C + P I W N +++ R L L ++ DQG+Y+C +N+ G +E L P+ R I T V+ G ++ + C A G P P+I+W + +RT P+D R+ +T L I + DSG + C A N + + I V P V P Q+ V+ G+ + +C G+P P + W KG + RH V+ L I G + D G Y C A N++G+ +T+ PR+ V +I + T+ VGA V++ C+S G P+P+I+W K G + + +TI D D G YEC RN IG+ L++
Sbjct: 260 GNTVYFTCRAEGNPKPEIIWLRNNNELSMKTDSRLNLLDDGTLMIQNTQETDQGIYQCMAKNVAGEVKTQEVTLRYFGSPA----RPTFVIQPQNTE-------------VLVGESVTLECSATGHPPPRISWTRGDRTPLPVDPRVNITPSGGLYIQNVVQGDSGEYACSATNNIDSVHATAFIIVQALPQFTVTP-----------------QDRVVIEGQTVDFQCEAKGNPPPVIAWTKGGSQLSVDRRHLVLSSGTLRISGVALHDQGQYECQAVNIIGSQKVVAHLTVQ--PRV--------------TPVFASIPSDTTVEVGANVQLPCSSQGEPEPAITW--NKDGVQVTESGKFHISPEGFLTINDVGPADAGRYECVARNTIGSASVSMVLSV 611 HSP 2 Score: 103.605 bits (257), Expect = 6.286e-23 Identity = 81/300 (27.00%), Postives = 121/300 (40.33%), Query Frame = 3
Query: 624 VMKGMNIIIRCPAMGIPEPKITWNKVNRTTPL--DSRIYVTHDNDLMITSGRVSDSGVWQCRAKNKVGEAIGQSV----IAVADKPTAVVYPDFRNDKDGRTSLVSIARQNLVIPTGKLIRLKCHVTGSPEPKVTWLKGHDIIRESDRHKVVGKQ--LEIKGAKVEDVGAYLCMAENVMGATTAFTEITIGIPPRIDRTTRRNSTVVDGRKHVSFNIGTSRTIPVGATVRIYCNSTGLPKPSISWISEKGGGRKKTRTRIQSDLPDIITIRDFSKRDEGTYECQVRNYIGNDRARSTLAL 1499
V G + C A G P+P+I W + N + DSR+ + D LMI + + +D G++QC AKN GE Q V +PT V+ P QN + G+ + L+C TG P P+++W +G D + L I+ D G Y C A N + + A I + P+ T + R + G TV C + G P P I+W KGG + R + I + D+G YECQ N IG+ + + L +
Sbjct: 257 VTSGNTVYFTCRAEGNPKPEIIWLRNNNELSMKTDSRLNLLDDGTLMIQNTQETDQGIYQCMAKNVAGEVKTQEVTLRYFGSPARPTFVIQP-----------------QNTEVLVGESVTLECSATGHPPPRISWTRGDRTPLPVDPRVNITPSGGLYIQNVVQGDSGEYACSATNNIDSVHATAFIIVQALPQFTVTPQ------------------DRVVIEGQTVDFQCEAKGNPPPVIAWT--KGGSQLSVDRRHLVLSSGTLRISGVALHDQGQYECQAVNIIGSQKVVAHLTV 519 HSP 3 Score: 85.8853 bits (211), Expect = 2.489e-17 Identity = 87/399 (21.80%), Postives = 159/399 (39.85%), Query Frame = 3
Query: 6 PPPKVKWFKDEEPLIKNVDYDARTH-----RLRIKKVRLRNKGIFRCQAENFLNTVSAESKISVGYSPYIYRPKAGLSPIISSAAHSEIKIPIGVKEIYIRLGSTATFHCNIDSFPTANITW-KLNKEPINIVETERYESLIPS-VLSVKKVSAEDQGVYRCEVRNIYGWYWRESKLAAMEPPSISYDRTNISITDAATVRKRVRITIGGSLIVMKGMNIIIRCPAMGIPEPKITWNKVNRTTPLDSRIYVTHDNDLMITSGRVSDSGVWQCRAKNKVGEAIGQSVIAVADKPTAVVYPDFRNDKDGRTSLVSIARQNLVIPTGKLIRLKCHVTGSPEPKVTWLKGHDIIRESDRHKVVGKQ-LEIKGAKVEDVGAYLCMAENVMGATTAFTEITIGIP 1178
P P++ W ++ L ++ D+R + L I+ + ++GI++C A+N V + ++++ Y RP + P + + +G + T C+ P I+W + ++ P+ + + ++ PS L ++ V D G Y C N + + P + T + RV V++G + +C A G P P I W K +D R V L I+ + D G ++C+A N +G Q V+A V P T + + + + G ++L C G PEP +TW K + ES + + + L I D G Y C+A N +G+ + +++ +P
Sbjct: 273 PKPEIIWLRNNNEL--SMKTDSRLNLLDDGTLMIQNTQETDQGIYQCMAKNVAGEVKTQ-EVTLRYFGSPARPTFVIQP----------------QNTEVLVGESVTLECSATGHPPPRISWTRGDRTPLPV---DPRVNITPSGGLYIQNVVQGDSGEYACSATNNIDSVHATAFIIVQALPQFT-----------VTPQDRV---------VIEGQTVDFQCEAKGNPPPVIAWTKGGSQLSVDRRHLVLSSGTLRISGVALHDQGQYECQAVNIIG---SQKVVA-----HLTVQPRV-------TPVFASIPSDTTVEVGANVQLPCSSQGEPEPAITWNKDGVQVTESGKFHISPEGFLTINDVGPADAGRYECVARNTIGSASVSMVLSVNVP 614 The following BLAST results are available for this feature:
BLAST of TCONS_00019993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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