TCONS_00019987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019987
Unique NameTCONS_00019987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019987 ID=TCONS_00019987|Name=TCONS_00019987|organism=Clytia hemisphaerica|type=transcript|length=2676bp
TTATAACAGTGGTGATAGTCGAGGACAACAATCTATCGGAAAAAATGTTA
ATGAAACAATTATCACCAAGATCTTTGAAACGATTGAAGGAGAATGGGGC
GAGCAAtaaacaaaatcaacaaaaagaacaaaagactTATAAAGTGGTCG
TTATTGGAGATTGCGAAGTTGGAAAGTCTgCATTGACAATGCAATATGTC
AGCAATGTATTCCTGGATTTCCACGATCCAACCATCGAAGATTTCTTCCA
AACACAGACTGTCGTTGATGGAGAATCAGGGATTGTTGATATTTTGGATA
CAGCAGGCCAAGATGGAAGTCAAACAACAATGAACGAGCAATATTTACGC
CAGGGCGGCCAAGCTTATATTGGCGTTTATTCAATCACCAGCCTCCCTAG
TTATAACCGTCTGCGTAAGCAGATCCAAACGTTGAAACGTTTACGTGCTA
ACGAACGTATCCCGTTAATTATCGTTGCTAACAAATTAGACTTATTTAAT
GATCGCGTTGTATCAACGATGGACGGTATCGCACTAGCCCGTGAATTTGA
TTGTCCCTTTTACGAGGCCTCAGCGGCTAATAGAATCAATGTTGAAGATG
CTTTTAATGGACTGATTCGCCAAGTACGAAAAATGGAGAACGACATTATG
TTTGAATGTGAGAATCTGAAGAAACCGAAGCTGAAACGATTCCGTAAATA
CGTATGTAAGAAGATTCAAAGTCATATTGTGATTTGAAATGGTCAACAAA
TTGGAATCTTAGAAGCTGGATAGTTAGTTGGAGTGGTTAGATGAATACTA
TGTACCTTTATGACACACATCAGCAGTGACTCATCTTTGTGCTTGGTGAA
ATTGCCACAATCTCAAGATCTACGGTAAGAGGGAAAACATACATTGTCAC
TTTTTATGGTACAATTAGAAGACCAAGTGACTGGTACAAGACATCTCAAT
GGTAACATGTATTGCTATAGAGAGATTCAAAGGGTAATAGACTTAATGCT
GGAGTTGACTTTTGGAGCGCGAGTAGCCACCAAGAAAAGACCTTTGCCGG
TGAATTAATCAACAGAGTGGGTAATTTTTcacaatgaaaacattttttgt
tgttgtgtgtttttgttttgtctAGCCTCTAGGTGATCAGGCAAACAACC
TCGATAATTTCCAGACTATTTTCAAAGAAGGGGGATTTATTTGAGTCCAC
CGAATAAAGAAAGCTTATCAATACTTGAATGAGAGGAAGCTGGTGAATAT
GTTGTATTTTTAGAAAACTTCCACAAAAACAGGATTTGATTTGACAATCA
ATATCTCCTTTAACAACACCATGCGAAAACGATCTAGAGAAAAGGTGGAA
GACAAAATGTCCTTCTATTTTTCGCTCGATATCACATGCGTGCGCGATGT
TCGTTTAAAAGTAAGGCGACCGGAAAAAATAGCTTTCCACTGCTGTCTTA
TGATAATTATGTTTTTGTGCAGCATCAGCAtattgtttgttgttgttttt
ggagAATTAAANAATGATAATTATGTTTTTGTGCAGCGTCAGCAtattgt
ttgttgttgtttttggagAATTAAAATCGAGACAAATGTTTGATTCATTG
TCTCGCTTATCCGACGGATGACGGATGGTAAATAACCGTCTGGTTtacaa
taataaaaagaaagggaaaaacAAGCTTTTTGATGAGGTTTTCTACTTAA
CTTTTCGTGGGATTTTGTTATTCGACATTTGACTATAATGCATTATTTTT
GGGATGTTTTTCAAGGAAAACAACAATCTAACTAATCAATCAAAAaacta
tattttgaaaacaCTTATCAGGGTATAGttaaaataacaacaacaacagc
cgTTAGCCAATAATATTAAACCACCACATATGTCTGTAATTGGTTTAATG
ATCAAAACAAGTTATTATCTTTTAATGATCAATCATTATCTAATTAACAT
CAAAACAATAGCATAACAAAAACAACAGGAAAAGTACATTTTTCGCTGGC
TACTtacttcaaaataaataaaaacgatTTGACCTTTACATGCATACAAT
AATTTATAAGAGCACAATCTATAAGAACATTAAAAAGCTGATGAAAACGT
TTTTAAGGTGTTAAAGTGAAAACTtaaggttaagaacatccaattttttt
gacgttcttataaattaaaagtgttaagaaaaattattattttcccagtt
tatttaaaaaacactttcgatttcctCTGAGTTGTTCCTTTAAGGAAATT
ATAACTTTCTTAACTATGCTAAAGTTTTGACCTTGGAAATTTTTCTGTTA
AGCAAGTCTATTGTGCATTTTTGGTATTATCGAGGCAAACTGTcacttaa
aaattttttttttttaattccacTAGAATTATTTATTTGTTTAACTAGTA
CTTTAGCGTGTACCGTTTATGATATTTACTTATTGTTATTTTGACAGTTT
tgcaaaaataatataattttgtgACAATTATATATTAAAATTGGACCGAA
AATTTGAAAGTAGCAAAAataatttagacaaaatttaaTATTGATAAAGg
aatttattgtaaataaacaAATGTCTTCTTTGTATATAACAGAAGTTTTA
GAGAATTTTATATAAGGAATTTTATTGAGCTAATTAATAAAGTTATGAaa
tatttgaatgaaaaatgaataaaagt
Run BLAST on NCBI

protein sequence of TCONS_00019987-protein

>TCONS_00019987-protein ID=TCONS_00019987-protein|Name=TCONS_00019987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
ITVVIVEDNNLSEKMLMKQLSPRSLKRLKENGASNKQNQQKEQKTYKVVV
IGDCEVGKSALTMQYVSNVFLDFHDPTIEDFFQTQTVVDGESGIVDILDT
AGQDGSQTTMNEQYLRQGGQAYIGVYSITSLPSYNRLRKQIQTLKRLRAN
ERIPLIIVANKLDLFNDRVVSTMDGIALAREFDCPFYEASAANRINVEDA
FNGLIRQVRKMENDIMFECENLKKPKLKRFRKYVCKKIQSHIVI
Run BLAST on NCBI

transcript from alignment at sc0000345:49399..56873-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019987 ID=TCONS_00019987|Name=TCONS_00019987|organism=Clytia hemisphaerica|type=transcript|length=7475bp|location=Sequence derived from alignment at sc0000345:49399..56873- (Clytia hemisphaerica)
TTATAACAGTGGTGATAGTCGAGGTCGGTAAAACTGTTTTTAAAAATGAG
TCTATTTTCTCTTACATTGGAATGTGCTTGTCTTAACTCTCTTTAATTAA
TTCCATATAAAAACACAACGTCATCCTTTGTCATCCAATACGAAAAATTG
CATAAATTAGCGTTGGAACTAGTCATAGCTTTCACTAAATGCCCCCACTG
AAAGGTCATGACATGCACTTATAAAGCTTTTAATGCTTCAAAGATTTATA
AAGCTTTTAATGCTTTAAAGATTGAAACATGAAAAATAATCAGGAATAAT
TAATTGATTTGATTATTGATTTATTTATTGATTGATTGATTGATTGATTA
ATTGATTCTCTATTGCTACTTTGCCTAATAAACAATAGTCAAGAGGATAC
TGTGGATAAAATTCATCAAAAAGTTCTGCGCCATCTTAAATAGGGCGAAA
TAGAAACCAATCCTAGCTAAGGCCCGGACTCCACTCACCTACGCTGTGAT
TGCACTTCTCAAGCAAAATCTTTTATGTTGTTGGTCAAAAGAAAATACCG
TAAGTTGGTCTAATGTCGACACCCGTCTTCTAATTTTGACATCCTTCTTT
AGAGATAGGAAAATTAGCAAGGTCGGAATCGCTGATTGAAACTAATTTTC
TTTGTGAAGCAATCAGAGAGGAAATAAACATTTCTCCATCAAAGTTCCCA
CCTTCCCATCATTCCTATCTTCAAAGTAGGGTGTCGAAATTAGAAGACAG
GATGTCGACATTAGACCAACTTACGGTAATAAAGGAATGCCATTGTGGTC
CATTCAGACGTACAGTCGAGAAAAGTTGAAATGCGCCAAAGTTCATAGTA
CTTAATTTCACGATGCAATCTTTTCTCCAAGCTGAAAGGATTGAATCCAT
TAAGATGATCGCAGCGCAGACAATGAAGATACGTGCCTTCAGGAAGCTAG
ACTTTTTGAATTTATAGTTATATACTTTCACTTCATGGTGTTTCTGTATG
ACTGTCTGTGTGCCTAGTCTAACCACCGTTAAATGCCTTCGGGAAGGTCC
CTCCTAACTTGGAAAGCCAGAATTGGAGCTATTTCACCAAACTACTGGAG
CGCAAGTTATTACGTAGGCTATCACAACTGAAAAAGTTGAATGTGCGCCT
ATACAAACTTTTTTCAGGTTTTTCAATTAGATTTACCACACTGAACAAAC
AGTGAAAACACTCTAAGTTAGTGAGGTAAATCTAATTTTGAAGACCAAAA
AAATAACAGACGACAAAGATAAATTCAGAAATTACAGTTTGAACAAAAAT
ATCAACAAATGTACATTTGAAAACTTGAGCAAACTTCTTTAAAGATTCCA
GAAAAAGAATTGAAACCATTGCTGAAATGAACTTCTGACTAAATTACAGT
ATTTATTCAGTTTTAAAGACAAGAAACAAAATTAGCCATACAAAACACTT
TTTCCAGTCAAAGACGAAAGAATCAGCTCATAACCAGTCTGCCATTTTGT
TTGTTTTGATTTGCAAAAGTAATATTGTAACTCGTGTTATGGTGTAATTA
TATACTTTTTCTATAATTTGCATTTATAACACTCGCTTCAGCTTTTCAGT
GCTAAAATCAAAACTAATGAAATGTAATATATAATAATGGTAATAGCATA
TAATGTAATATGAAAATGTGTATAACATTTACCGCTGTATAATTTACCGC
CATATTTTTGCGGAACACTTAATTGGCCGGAAATCAAANTTTTTCTCGGA
CAGGACAACAATCTATCGGAAAAAATGTTAATGAAACAATTATCACCAAG
ATCTTTGAAACGATTGAAGGAGAATGGGGCGAGCAATAAACAAAATCAAC
AAAAAGAACAAAAGACTTATAAAGTGGTCGTTATTGGAGATTGCGAAGTT
GGAAAGTCTGGTAAGTTTAAAAAAATATTTTTTTTGGGGGAGGGCTAAAT
TTTTGAAAATTATACCGGAGCCAAAACGTTTAATAATAAATCTGAATTTG
GAATCATTTGCATTCGATTTAAAAAGATTGGGATCAGATTTCTTCAGATA
TATTGATACTTGGATAGACGCTTAGAGAACTTTTCAATATTAATTTTACA
TTACATAGCGCCTGCCTTTATCTGCAAAAACAAAACCTAAGCTTTCTGAG
AATTTCTTTACATTTTATGAATTCTAATACTGCGAGACTATTTTCACATG
AATTCTGCTAAAACCTGAATAAAGGTTTGTTTTGATACGTTTCAAAGTAT
TGATGTGATTGATATCTTATTTTGATTTTATTGATATTTTATTTTGCATT
TTGCTACAAAAATAACTAAAACTATTTTTCAATAATTGATGTTTCTGTGT
CTACATATGGTGTCTCGGTGGGGAAGAAAATTTTGCCAAGGGAAACTCAG
AAAAACCTTGTTGTTTATGTCTACTTTATACAGTTGAGAAAAAAAATCAA
AATTTAATACATGCTGCGTAAAGATTTTGAAAAATAACAATCTTACAATA
TTTATGAATTAGAATTTCTTATTTTGACGAAAATAAAATGAGCAACTTAC
TTTATGACGTGTGCTAGACAAATGGAAAAGTAGGGGGTCAACTATTTTTA
AGTCATCAATATTCCCTAAAATTCAAAAAATATCGTACCTACTGTAGATC
GCCTAGGCAACCCGAATCGAGGCATTTCTTTAATGAATGAGGAATCGTGT
TTTTGCTAAGTTTTTGTTATGGCATAATAACCGCCCAATATTTTGTCTGA
GATTAAATAAGAGACGTTATGAACATGTAAGAAAATCTCCTAAATACAGT
ATAAAACTGATGATGCATATCAAATATAATATTCCTCAAAATGGATGCAA
ATGTCTGGATATGTAATACTGTACATCCAAAAGATTTGACCTACCAAGCT
ACAGATTATAATCTACTGTACTCTCTTTCTAGCGATACAAAGAAAATTCG
TGTTCTTAAAAATAAACATGCTTATAAGTTAATAAACAATTTATAATCCT
AAGGATAAGTTTCATTTATAAGACTTGAAACTCAAAGACTGTTTTAAAAA
CCACAAAGCACAAACAATCTGACGTGGTCCTCATGAGATTTTTAAATGAC
GTATATGGTTGTTTACGAGAAATTATGAACGTTAGTGTTACGGGCCAAAA
AGAATTAGAGTATGATTAATTTTCAATTTTGAACTCTACAAAAACAAAAA
ACAATTTTGTTGATTGAAAAAAGGTTTCTGCGAATACTGTCGTAGGCGTT
CTTCCGCGGGTAAATTAAGTTGTTGTTTTCGGATATCGTGATTTCTCTTT
AGTAAACCCTCTCTCTCTCTCCTTTGAGTAACAAATATCAAAACGTTTTT
CTTTTATGAGAACAAATTTATAATAACAGAAAACCCAAGAATAGTAAGAA
CAAGTGAGAACATTTTTATAGACTCTAAAGCACCCAATTTCTTACGAAAT
TATACAGAATTACCCACGAAATGGTACAAGAAACATTGGACGTTCTTGTA
AAAAAACGTGTATAACAAAAAAAACCACGAAAAATAGAGTGCGAAATTAT
CAGCAGCTGGAAGTTCTTATATCTAAAAACAGGAGACGAATACACGCTTT
TTTTTATAAGAATGGTGTAAATCCGAAATGGATTTTCTTAACCTTTTTGG
GAAAATCATTCTAAAATATTCTTACAGCACATTCTTAGGTTAGAATCCTA
ATTCATACTATATTTAACATTTAGTACGTACGTCTCAAGCATAAAATGGC
ATTTTTGTGAAAGGAGTGAGCCTAACTTGGGAATAATTGATAATTGATAA
TTGAAAATGGCATTCTTAGCTTTAGTAGCAAAATTCCATGATGGTGATAT
ATTCTTAACATATTCTTAGTTTTTTGGCCATTTTCATATTCTTATAAAAA
AGAGCGTGTACTGAGAGAGTCGAAGCCCAGTCATCGATAGTCGATATAAT
AGAAATTTTCGTTAACCCGATTATTATAACTTTTTGAAAAGTCAAAACTG
AAGATAATTCATAGAAGGCTTCTTAAAACTTTAGTTCCTCTATGTACACT
ATGTATGTATACTTCCGACAATAACAAAATAGAACTGCCTCTCTATCTGT
GTATTTGATAAGAAAAACCGACAACAACAAAAACAAAAACAACATTTTGA
CCGAGTCATCAGCATTAAAAGAAAATGATAAAAACAACAAACAAGGAACT
TTCACTTTTTTATCAAAATAAACAACTTATTTGAAGTCCTATATTTGTGA
TGACTCATTTTCAGTCAAAATTGAAAACAAGATGGTTGTTGTGACGTAAT
GTTATGAACCCCAAAAACATGGCTGGTAAAGATATTAAAAGCAAGTCACC
GCTAATAAAGGGAAAAGAGAAATTTGCCCATAAGGGGTTTCTATTAGAAA
CAAAAACCCATGGTTACAAGATGTTTAGTGAAATGTCCTACCCTGCAAGA
GATAGTTAAAAAAGACCGTCCCGCAAAAAGTCAAGATCCGGTCAAGATAT
TGTTTGGACCTTGAAAAACACTTTAAAAATGACCACTCATCCAAAATGAC
CATTTTATGGATGTTAAGAGAACAAAGTTTCCCAGCTGAGTAGTAGTTTA
TTTAAAGTGTCCGTGTTTTTAGAAAGAAATCGTCAAATAGTCAAATCTCT
ATTTCTTTTCTTTGCAGCATTGACAATGCAATATGTCAGCAATGTATTCC
TGGATTTCCACGATCCAACCATCGAAGATTTCTTCCAAACACAGACTGTC
GTTGATGGAGAATCAGGGATTGTTGATATTTTGGATACAGCAGGCCAAGT
AAGTCAATTAATATATCTCTCAAAGGGAAAAATAATTGGTCCTCCAACAG
ATTCGTGCAACTTCTATAAACTACATTCGATTATGTATGAGATTCACACT
AAGGAAAATGTGTTCGCATTCTTTGAAGTAATCTATATTTGTACGAAATG
ACGATGAAACAAGGCGTTCCAAAGTGTCCTTCTAAGATCTTCATTTTATA
GATAGCCGAATGGACTGGTCACTCAGAGTCTGCGTAACAAAGAAATCTAA
CGAATTCTAAATAAATAATCTTTGCTTTAACTAATCGATACATTTTTTAC
CCATTTTCAGGATGGAAGTCAAACAACAATGAACGAGCAATATTTACGCC
AGGGCGGCCAAGCTTATATTGGCGTTTATTCAATCACCAGCCTCCCTAGT
TATAACCGTCTGCGTAAGCAGATCCAAACGTTGAAACGTTTACGTGCTAA
CGAACGTATCCCGTTAATTATCGTTGCTAACAAATTAGACTTATTTAATG
ATCGCGTTGTATCAACGATGGACGGTATCGCACTAGCCCGTGAATTTGAT
TGTCCCTTTTACGAGGCCTCAGCGGCTAATAGAATCAATGTTGAAGATGC
TTTTAATGGACTGATTCGCCAAGTACGAAAAATGGAGAACGACATTATGT
TTGAATGTGAGAATCTGAAGAAACCGAAGCTGAAACGATTCCGTAAATAC
GTATGTAAGAAGATTCAAAGTCATATTGTGATTTGAAATGGTCAACAAAT
TGGAATCTTAGAAGCTGGATAGTTAGTTGGAGTGGTTAGATGAATACTAT
GTACCTTTATGACACACATCAGCAGTGACTCATCTTTGTGCTTGGTGAAA
TTGCCACAATCTCAAGATCTACGGTAAGAGGGAAAACATACATTGTCACT
TTTTATGGTACAATTAGAAGACCAAGTGACTGGTACAAGACATCTCAATG
GTAACATGTATTGCTATAGAGAGATTCAAAGGGTAATAGACTTAATGCTG
GAGTTGACTTTTGGAGCGCGAGTAGCCACCAAGAAAAGACCTTTGCCGGT
GAATTAATCAACAGAGTGGGTAATTTTTCACAATGAAAACATTTTTTGTT
GTTGTGTGTTTTTGTTTTGTCTAGCCTCTAGGTGATCAGGCAAACAACCT
CGATAATTTCCAGACTATTTTCAAAGAAGGGGGATTTATTTGAGTCCACC
GAATAAAGAAAGCTTATCAATACTTGAATGAGAGGAAGCTGGTGAATATG
TTGTATTTTTAGAAAACTTCCACAAAAACAGGATTTGATTTGACAATCAA
TATCTCCTTTAACAACACCATGCGAAAACGATCTAGAGAAAAGGTGGAAG
ACAAAATGTCCTTCTATTTTTCGCTCGATATCACATGCGTGCGCGATGTT
CGTTTAAAAGTAAGGCGACCGGAAAAAATAGCTTTCCACTGCTGTCTTAT
GATAATTATGTTTTTGTGCAGCATCAGCATATTGTTTGTTGTTGTTTTTG
GAGAATTAAANAATGATAATTATGTTTTTGTGCAGCGTCAGCATATTGTT
TGTTGTTGTTTTTGGAGAATTAAAATCGAGACAAATGTTTGATTCATTGT
CTCGCTTATCCGACGGATGACGGATGGTAAATAACCGTCTGGTTTACAAT
AATAAAAAGAAAGGGAAAAACAAGCTTTTTGATGAGGTTTTCTACTTAAC
TTTTCGTGGGATTTTGTTATTCGACATTTGACTATAATGCATTATTTTTG
GGATGTTTTTCAAGGAAAACAACAATCTAACTAATCAATCAAAAAACTAT
ATTTTGAAAACACTTATCAGGGTATAGTTAAAATAACAACAACAACAGCC
GTTAGCCAATAATATTAAACCACCACATATGTCTGTAATTGGTTTAATGA
TCAAAACAAGTTATTATCTTTTAATGATCAATCATTATCTAATTAACATC
AAAACAATAGCATAACAAAAACAACAGGAAAAGTACATTTTTCGCTGGCT
ACTTACTTCAAAATAAATAAAAACGATTTGACCTTTACATGCATACAATA
ATTTATAAGAGCACAATCTATAAGAACATTAAAAAGCTGATGAAAACGTT
TTTAAGGTGTTAAAGTGAAAACTTAAGGTTAAGAACATCCAATTTTTTTG
ACGTTCTTATAAATTAAAAGTGTTAAGAAAAATTATTATTTTCCCAGTTT
ATTTAAAAAACACTTTCGATTTCCTCTGAGTTGTTCCTTTAAGGAAATTA
TAACTTTCTTAACTATGCTAAAGTTTTGACCTTGGAAATTTTTCTGTTAA
GCAAGTCTATTGTGCATTTTTGGTATTATCGAGGCAAACTGTCACTTAAA
AATTTTTTTTTTTTAATTCCACTAGAATTATTTATTTGTTTAACTAGTAC
TTTAGCGTGTACCGTTTATGATATTTACTTATTGTTATTTTGACAGTTTT
GCAAAAATAATATAATTTTGTGACAATTATATATTAAAATTGGACCGAAA
ATTTGAAAGTAGCAAAAATAATTTAGACAAAATTTAATATTGATAAAGGA
ATTTATTGTAAATAAACAAATGTCTTCTTTGTATATAACAGAAGTTTTAG
AGAATTTTATATAAGGAATTTTATTGAGCTAATTAATAAAGTTATGAAAT
ATTTGAATGAAAAATGAATAAAAGT

Coding sequence (CDS) from alignment at sc0000345:49399..56873-

>TCONS_00019987 ID=TCONS_00019987|Name=TCONS_00019987|organism=Clytia hemisphaerica|type=CDS|length=2940bp|location=Sequence derived from alignment at sc0000345:49399..56873- (Clytia hemisphaerica)
GATGGAAGTCAAACAACAATGAACGAGCAATATTTACGCCAGGGCGGCCA
AGCTTATATTGGCGTTTATTCAATCACCAGCCTCCCTAGTTATAACCGTC
TGCGTAAGCAGATCCAAACGTTGAAACGTTTACGTGCTAACGAACGTATC
CCGTTAATTATCGTTGCTAACAAATTAGACTTATTTAATGATCGCGTTGT
ATCAACGATGGACGGTATCGCACTAGCCCGTGAATTTGATTGTCCCTTTT
ACGAGGCCTCAGCGGCTAATAGAATCAATGTTGAAGATGCTTTTAATGGA
CTGATTCGCCAAGTACGAAAAATGGAGAACGACATTATGTTTGAATGTGA
GAATCTGAAGAAACCGAAGCTGAAACGATTCCGTAAATACGTATGTAAGA
AGATTCAAAGTCATATTGTGATTTGACATTGACAATGCAATATGTCAGCA
ATGTATTCCTGGATTTCCACGATCCAACCATCGAAGATTTCTTCCAAACA
CAGACTGTCGTTGATGGAGAATCAGGGATTGTTGATATTTTGGATACAGC
AGGCCAAGACAACAATCTATCGGAAAAAATGTTAATGAAACAATTATCAC
CAAGATCTTTGAAACGATTGAAGGAGAATGGGGCGAGCAATAAACAAAAT
CAACAAAAAGAACAAAAGACTTATAAAGTGGTCGTTATTGGAGATTGCGA
AGTTGGAAAGTCTGATAACAGTGGTGATAGTCGAGGATGGAAGTCAAACA
ACAATGAACGAGCAATATTTACGCCAGGGCGGCCAAGCTTATATTGGCGT
TTATTCAATCACCAGCCTCCCTAGTTATAACCGTCTGCGTAAGCAGATCC
AAACGTTGAAACGTTTACGTGCTAACGAACGTATCCCGTTAATTATCGTT
GCTAACAAATTAGACTTATTTAATGATCGCGTTGTATCAACGATGGACGG
TATCGCACTAGCCCGTGAATTTGATTGTCCCTTTTACGAGGCCTCAGCGG
CTAATAGAATCAATGTTGAAGATGCTTTTAATGGACTGATTCGCCAAGTA
CGAAAAATGGAGAACGACATTATGTTTGAATGTGAGAATCTGAAGAAACC
GAAGCTGAAACGATTCCGTAAATACGTATGTAAGAAGATTCAAAGTCATA
TTGTGATTTGACATTGACAATGCAATATGTCAGCAATGTATTCCTGGATT
TCCACGATCCAACCATCGAAGATTTCTTCCAAACACAGACTGTCGTTGAT
GGAGAATCAGGGATTGTTGATATTTTGGATACAGCAGGCCAAGACAACAA
TCTATCGGAAAAAATGTTAATGAAACAATTATCACCAAGATCTTTGAAAC
GATTGAAGGAGAATGGGGCGAGCAATAAACAAAATCAACAAAAAGAACAA
AAGACTTATAAAGTGGTCGTTATTGGAGATTGCGAAGTTGGAAAGTCTGA
TAACAGTGGTGATAGTCGAGGATGGAAGTCAAACAACAATGAACGAGCAA
TATTTACGCCAGGGCGGCCAAGCTTATATTGGCGTTTATTCAATCACCAG
CCTCCCTAGTTATAACCGTCTGCGTAAGCAGATCCAAACGTTGAAACGTT
TACGTGCTAACGAACGTATCCCGTTAATTATCGTTGCTAACAAATTAGAC
TTATTTAATGATCGCGTTGTATCAACGATGGACGGTATCGCACTAGCCCG
TGAATTTGATTGTCCCTTTTACGAGGCCTCAGCGGCTAATAGAATCAATG
TTGAAGATGCTTTTAATGGACTGATTCGCCAAGTACGAAAAATGGAGAAC
GACATTATGTTTGAATGTGAGAATCTGAAGAAACCGAAGCTGAAACGATT
CCGTAAATACGTATGTAAGAAGATTCAAAGTCATATTGTGATTTGACATT
GACAATGCAATATGTCAGCAATGTATTCCTGGATTTCCACGATCCAACCA
TCGAAGATTTCTTCCAAACACAGACTGTCGTTGATGGAGAATCAGGGATT
GTTGATATTTTGGATACAGCAGGCCAAGACAACAATCTATCGGAAAAAAT
GTTAATGAAACAATTATCACCAAGATCTTTGAAACGATTGAAGGAGAATG
GGGCGAGCAATAAACAAAATCAACAAAAAGAACAAAAGACTTATAAAGTG
GTCGTTATTGGAGATTGCGAAGTTGGAAAGTCTGATAACAGTGGTGATAG
TCGAGGATGGAAGTCAAACAACAATGAACGAGCAATATTTACGCCAGGGC
GGCCAAGCTTATATTGGCGTTTATTCAATCACCAGCCTCCCTAGTTATAA
CCGTCTGCGTAAGCAGATCCAAACGTTGAAACGTTTACGTGCTAACGAAC
GTATCCCGTTAATTATCGTTGCTAACAAATTAGACTTATTTAATGATCGC
GTTGTATCAACGATGGACGGTATCGCACTAGCCCGTGAATTTGATTGTCC
CTTTTACGAGGCCTCAGCGGCTAATAGAATCAATGTTGAAGATGCTTTTA
ATGGACTGATTCGCCAAGTACGAAAAATGGAGAACGACATTATGTTTGAA
TGTGAGAATCTGAAGAAACCGAAGCTGAAACGATTCCGTAAATACGTATG
TAAGAAGATTCAAAGTCATATTGTGATTTGACATTGACAATGCAATATGT
CAGCAATGTATTCCTGGATTTCCACGATCCAACCATCGAAGATTTCTTCC
AAACACAGACTGTCGTTGATGGAGAATCAGGGATTGTTGATATTTTGGAT
ACAGCAGGCCAAGACAACAATCTATCGGAAAAAATGTTAATGAAACAATT
ATCACCAAGATCTTTGAAACGATTGAAGGAGAATGGGGCGAGCAATAAAC
AAAATCAACAAAAAGAACAAAAGACTTATAAAGTGGTCGTTATTGGAGAT
TGCGAAGTTGGAAAGTCTGATAACAGTGGTGATAGTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011228XLOC_011228Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019987-exon-sc0000345-1575043694:56851..56873TCONS_00019987-exon-sc0000345-1575043694:56851..56873Clytia hemisphaericaexon
TCONS_00019987-exon-sc0000345-1575043694:54964..55120TCONS_00019987-exon-sc0000345-1575043694:54964..55120Clytia hemisphaericaexon
TCONS_00019987-exon-sc0000345-1575043694:52076..52206TCONS_00019987-exon-sc0000345-1575043694:52076..52206Clytia hemisphaericaexon
TCONS_00019987-exon-sc0000345-1575043694:49399..51763TCONS_00019987-exon-sc0000345-1575043694:49399..51763Clytia hemisphaericaexon
TCONS_00019987-exon-sc0000345-1510915933:56851..56873TCONS_00019987-exon-sc0000345-1510915933:56851..56873Clytia hemisphaericaexon
TCONS_00019987-exon-sc0000345-1510915933:54964..55120TCONS_00019987-exon-sc0000345-1510915933:54964..55120Clytia hemisphaericaexon
TCONS_00019987-exon-sc0000345-1510915933:52076..52206TCONS_00019987-exon-sc0000345-1510915933:52076..52206Clytia hemisphaericaexon
TCONS_00019987-exon-sc0000345-1510915933:49399..51763TCONS_00019987-exon-sc0000345-1510915933:49399..51763Clytia hemisphaericaexon
TCONS_00019987-exon-sc0000345-1491911889:56851..56873TCONS_00019987-exon-sc0000345-1491911889:56851..56873Clytia hemisphaericaexon
TCONS_00019987-exon-sc0000345-1491911889:54964..55120TCONS_00019987-exon-sc0000345-1491911889:54964..55120Clytia hemisphaericaexon
TCONS_00019987-exon-sc0000345-1491911889:52076..52206TCONS_00019987-exon-sc0000345-1491911889:52076..52206Clytia hemisphaericaexon
TCONS_00019987-exon-sc0000345-1491911889:49399..51763TCONS_00019987-exon-sc0000345-1491911889:49399..51763Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019987-proteinTCONS_00019987-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:49399..56873 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.102762	0.238632	0	0	0	0	0	1.11984	5.72092	8.64329e-05	4.29582e-08	0.842362	0	6.10651e-05	1.29156e-09	1.95912	3.11589	2.17588e-07	0.00725005	0	4.58721e-05	2.50961e-05	0	0	0	2.15428e-09	0.595864	6.8988e-05	2.22125
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR020849Small_GTPase_Ras
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00019987 vs. Swiss-Prot (Human)
Match: RIT2 (GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 4.433e-47
Identity = 87/186 (46.77%), Postives = 127/186 (68.28%), Query Frame = 3 
Query:  132 KTYKVVVIGDCEVGKSALTMQYVSNVFLDFHDPTIEDFFQTQTVVDGESGIVDILDTAGQDGSQTTMNEQYLRQGGQAYIGVYSITSLPSYNRLRKQIQTLKRLRANERIPLIIVANKLDLFNDRVVSTMDGIALAREFDCPFYEASAANRINVEDAFNGLIRQVRKMENDIMFECENLKKPKLKR 689
            + YKVV++G   VGKSA+TMQ++S+ F D+HDPTIED ++TQ  +D E   +DILDTAGQ    T M EQY+R GG+ +I  YS+T   S+    K  + + ++R    IPL++V NK+DL   R VST +G++LA+E++C F+E SAA R  ++DAF+GL+R++RK E+       +L + KLKR
Sbjct:   19 REYKVVMLGAGGVGKSAMTMQFISHQFPDYHDPTIEDAYKTQVRIDNEPAYLDILDTAGQ-AEFTAMREQYMR-GGEGFIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDLEQFRQVSTEEGLSLAQEYNCGFFETSAALRFCIDDAFHGLVREIRKKES-----MPSLMEKKLKR 197
The following BLAST results are available for this feature:
BLAST of TCONS_00019987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RIT24.433e-4746.77GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 P... [more]
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