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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019973 ID=TCONS_00019973|Name=TCONS_00019973|organism=Clytia hemisphaerica|type=transcript|length=1666bp
TAAAGGTCAAatcgtttttatttattttgaagtaAGTAGCCAGCGAAAAA
TGTACTTTTCCTGTTGTTTTTGTTATGCTATTGTTTTGATGTTAATTAGA
TAATGATTGATCATTAAAAGATAATAACTTGTTTTGATCATTAAACCAAT
TACAGACATATGTGGTGGTTTAATATTATTGGCTAAcggctgttgttgtt
gttattttaaCTATACCCTGATAAGtgttttcaaaatatagttTTTTGAT
TGATTAGTTAGATTGTTGTTTTCCTTGAAAAACATCCCAAAAATAATGCA
TTATAGTCAAATGTCGAATAACAAAATCCCACGAAAAGTTAAGTAGAAAA
CCTCATCAAAAAGCTTgtttttccctttctttttattattgtaAACCAGA
CGGTTATTTACCATCCGTCATCCGTCGGATAAGCGAGACAATGAATCAAA
CATTTGTCTCGATTTTAATTctccaaaaacaacaacaaacaataTGCTGA
CGCTGCACAAAAACATAATTATCATAAGACAGCAGTGGAAAGCTATTTTT
TCCGGTCGCCTTACTTTTAAACGAACATCGCGCACGCATGTGATATCGAG
CGAAAAATAGAAGGACATTTTGTCTTCCACCTTTTCTCTAGATCGTTTTC
GCATGGTGTTGTTAAAGGAGATATTGATTGTCAAATCAAATCCTGTTTTT
GTGGAAGTTTTCTAAAAATACAACATATTCACCAGCTTCCTCTCATTCAA
GTATTGATAAGCTTTCTTTATTCGGTGGACTCAAATAAATCCCCCTTCTT
TGAAAATAGTCTGGAAATTATCGAGGTTGTTTGCCTGATCACCTAGAGGC
TagacaaaacaaaaacacacaacaacaaaaaatgttttcattgtgAAAAA
TTACCCACTCTGTTGATTAATTCACCGGCAAAGGTCTTTTCTTGGTGGCT
ACTCGCGCTCCAAAAGTCAACTCCAGCATTAAGTCTATTACCCTTTGAAT
CTCTCTATAGCAATACATGTTACCATTGAGATGTCTTGTACCAGTCACTT
GGTCTTCTAATTGTACCATAAAAAGTGACAATGTATGTTTTCCCTCTTAC
CGTAGATCTTGAGATTGTGGCAATTTCACCAAGCACAAAGATGAGTCACT
GCTGATGTGTGTCATAAAGGTACATAGTATTCATCTAACCACTCCAACTA
ACTATCCAGCTTCTAAGATTCCAATTTGTTGACCATTTCAAATCACAATA
TGACTTTGAATCTTCTTACATACGTATTTACGGAATCGTTTCAGCTTCGG
TTTCTTCAGATTCTCACATTCAAACATAATGTCGTTCTCCATTTTTCGTA
CTTGGCGAATCAGTCCATTAAAAGCATCTTCAACATTGATTCTATTAGCC
GCTGAGGCCTCGTAAAAGGGACAATCAAATTCACGGGCTAGTGCGATACC
GTCCATCGTTGATACAACGCGATCATTAAATAAGTCTAATTTGTTAGCAA
CGATAATTAACGGGATACGTTCGTTAGCACGTAAACGTTTCAACGTTTGG
ATCTGCTTACGCAGACGGTTATAACTAGGGAGGCTGGTGATTGAATAAAC
GCCAATATAAGCTTGGCCGCCCTGGCGTAAATATTGCTCGTTCATTGTTG
TTTGACTTCCATCctg Run BLAST on NCBI transcript from alignment at sc0000345:50037..51766+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019973 ID=TCONS_00019973|Name=TCONS_00019973|organism=Clytia hemisphaerica|type=transcript|length=1730bp|location=Sequence derived from alignment at sc0000345:50037..51766+ (Clytia hemisphaerica)
TAAAGGTCAAatcgtttttatttattttgaagtaAGTAGCCAGCGAAAAA
TGTACTTTTCCTGTTGTTTTTGTTATGCTATTGTTTTGATGTTAATTAGA
TAATGATTGATCATTAAAAGATAATAACTTGTTTTGATCATTAAACCAAT
TACAGACATATGTGGTGGTTTAATATTATTGGCTAAcggctgttgttgtt
gttattttaaCTATACCCTGATAAGtgttttcaaaatatagttTTTTGAT
TGATTAGTTAGATTGTTGTTTTCCTTGAAAAACATCCCAAAAATAATGCA
TTATAGTCAAATGTCGAATAACAAAATCCCACGAAAAGTTAAGTAGAAAA
CCTCATCAAAAAGCTTgtttttccctttctttttattattgtaAACCAGA
CGGTTATTTACCATCCGTCATCCGTCGGATAAGCGAGACAATGAATCAAA
CATTTGTCTCGATTTTAATTctccaaaaacaacaacaaacaataTGCTGA
CGCTGCACAAAAACATAATTATCATTNTTTAATTctccaaaaacaacaac
aaacaataTGCTGATGCTGCACAAAAACATAATTATCATAAGACAGCAGT
GGAAAGCTATTTTTTCCGGTCGCCTTACTTTTAAACGAACATCGCGCACG
CATGTGATATCGAGCGAAAAATAGAAGGACATTTTGTCTTCCACCTTTTC
TCTAGATCGTTTTCGCATGGTGTTGTTAAAGGAGATATTGATTGTCAAAT
CAAATCCTGTTTTTGTGGAAGTTTTCTAAAAATACAACATATTCACCAGC
TTCCTCTCATTCAAGTATTGATAAGCTTTCTTTATTCGGTGGACTCAAAT
AAATCCCCCTTCTTTGAAAATAGTCTGGAAATTATCGAGGTTGTTTGCCT
GATCACCTAGAGGCTagacaaaacaaaaacacacaacaacaaaaaatgtt
ttcattgtgAAAAATTACCCACTCTGTTGATTAATTCACCGGCAAAGGTC
TTTTCTTGGTGGCTACTCGCGCTCCAAAAGTCAACTCCAGCATTAAGTCT
ATTACCCTTTGAATCTCTCTATAGCAATACATGTTACCATTGAGATGTCT
TGTACCAGTCACTTGGTCTTCTAATTGTACCATAAAAAGTGACAATGTAT
GTTTTCCCTCTTACCGTAGATCTTGAGATTGTGGCAATTTCACCAAGCAC
AAAGATGAGTCACTGCTGATGTGTGTCATAAAGGTACATAGTATTCATCT
AACCACTCCAACTAACTATCCAGCTTCTAAGATTCCAATTTGTTGACCAT
TTCAAATCACAATATGACTTTGAATCTTCTTACATACGTATTTACGGAAT
CGTTTCAGCTTCGGTTTCTTCAGATTCTCACATTCAAACATAATGTCGTT
CTCCATTTTTCGTACTTGGCGAATCAGTCCATTAAAAGCATCTTCAACAT
TGATTCTATTAGCCGCTGAGGCCTCGTAAAAGGGACAATCAAATTCACGG
GCTAGTGCGATACCGTCCATCGTTGATACAACGCGATCATTAAATAAGTC
TAATTTGTTAGCAACGATAATTAACGGGATACGTTCGTTAGCACGTAAAC
GTTTCAACGTTTGGATCTGCTTACGCAGACGGTTATAACTAGGGAGGCTG
GTGATTGAATAAACGCCAATATAAGCTTGGCCGCCCTGGCGTAAATATTG
CTCGTTCATTGTTGTTTGACTTCCATCctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019973-exon-sc0000345-1491911889:50037..50550 | TCONS_00019973-exon-sc0000345-1491911889:50037..50550 | Clytia hemisphaerica | exon |
| TCONS_00019973-exon-sc0000345-1510915933:50037..50550 | TCONS_00019973-exon-sc0000345-1510915933:50037..50550 | Clytia hemisphaerica | exon |
| TCONS_00019973-exon-sc0000345-1575043694:50037..50550 | TCONS_00019973-exon-sc0000345-1575043694:50037..50550 | Clytia hemisphaerica | exon |
| TCONS_00019973-exon-sc0000345-1491911889:50615..51766 | TCONS_00019973-exon-sc0000345-1491911889:50615..51766 | Clytia hemisphaerica | exon |
| TCONS_00019973-exon-sc0000345-1510915933:50615..51766 | TCONS_00019973-exon-sc0000345-1510915933:50615..51766 | Clytia hemisphaerica | exon |
| TCONS_00019973-exon-sc0000345-1575043694:50615..51766 | TCONS_00019973-exon-sc0000345-1575043694:50615..51766 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000345 | supercontig | sc0000345:50037..51766 + |
Blast
BLAST of TCONS_00019973 vs. Swiss-Prot (Human)
Match: RIT1 (GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.898e-24 Identity = 49/119 (41.18%), Postives = 76/119 (63.87%), Query Frame = -1
Query: 1295 TTMNEQYLRQGGQAYIGVYSITSLPSYNRLRKQIQTLKRLRANERIPLIIVANKLDLFNDRVVSTMDGIALAREFDCPFYEASAANRINVEDAFNGLIRQVRKMENDIMFECENLKKPK 1651
T M +QY+R G+ +I YSIT S++ +R+ Q + R+R + P+++V NK DL R V+ +G+ALAREF CPF+E SAA R ++D F+ L+R++R+ E + + E KPK
Sbjct: 83 TAMRDQYMR-AGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQVTKEEGLALAREFSCPFFETSAAYRYYIDDVFHALVREIRRKEKEAVLAMEKKSKPK 200
The following BLAST results are available for this feature:
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