TCONS_00019962 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019962
Unique NameTCONS_00019962
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019962 ID=TCONS_00019962|Name=TCONS_00019962|organism=Clytia hemisphaerica|type=transcript|length=409bp
TTTTTCCATGCTTTTTCAACTCAATACAAAGGCGTTTAAACCACGAGTTA
ATATTATTTCAGGCTGTCGAGGCGAGATAATCGAATTATTGTTCATGGAC
CCGATTTAGATAAAAAACGTTCCTTGCTAATTTTTAACAGGGAGTGTAGG
CTGTAATTTTGCTAAAAAGGCTTACGATCTCCATCTACACACGAGATTAA
GGATATATATATTGGGACAATAAAAGCATTTCAATAGTGTCTTTTTTCCT
CGTCGTATATGTATAGAATACCTTCTTTGTTCTACCGTTAGCCAGTCGTC
GTGCTGTGATGAAAGACGccctttttaaaacttttaatccTGTTTAATCT
TGTTTAattgaatgttcattctagcagaagcgataaaaaaataaataatg
atGCCTGAC
Run BLAST on NCBI

transcript from alignment at sc0000339:177601..178009

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019962 ID=TCONS_00019962|Name=TCONS_00019962|organism=Clytia hemisphaerica|type=transcript|length=409bp|location=Sequence derived from alignment at sc0000339:177601..178009 (Clytia hemisphaerica)
GTCAGGCatcattatttatttttttatcgcttctgctagaatgaacattc
aatTAAACAAGATTAAACAggattaaaagttttaaaaagggCGTCTTTCA
TCACAGCACGACGACTGGCTAACGGTAGAACAAAGAAGGTATTCTATACA
TATACGACGAGGAAAAAAGACACTATTGAAATGCTTTTATTGTCCCAATA
TATATATCCTTAATCTCGTGTGTAGATGGAGATCGTAAGCCTTTTTAGCA
AAATTACAGCCTACACTCCCTGTTAAAAATTAGCAAGGAACGTTTTTTAT
CTAAATCGGGTCCATGAACAATAATTCGATTATCTCGCCTCGACAGCCTG
AAATAATATTAACTCGTGGTTTAAACGCCTTTGTATTGAGTTGAAAAAGC
ATGGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011209XLOC_011209Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019962-exon-sc0000339-1491911889:177601..178009TCONS_00019962-exon-sc0000339-1491911889:177601..178009Clytia hemisphaericaexon
TCONS_00019962-exon-sc0000339-1510915933:177601..178009TCONS_00019962-exon-sc0000339-1510915933:177601..178009Clytia hemisphaericaexon
TCONS_00019962-exon-sc0000339-1575043694:177601..178009TCONS_00019962-exon-sc0000339-1575043694:177601..178009Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:177601..178009 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.177389	0.345964	0.200849	0	1.43531	0	0	1.28105	0.149482	0.185158	0.898593	0.11814	0.117976	0	0.402909	0	0.26633	0.545959	0	0	0	0.752907	0.610171	0.369823	0.190454	0.339952	0.729705	0.259587	0.393775	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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