TCONS_00019960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019960
Unique NameTCONS_00019960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length718

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019960 ID=TCONS_00019960|Name=TCONS_00019960|organism=Clytia hemisphaerica|type=transcript|length=718bp
GGCATCAttttgcggaactaattttagcgatAGACACCAAATATTTGcct
aaattctttcattttcttaggGGTTTTCAAGGATTTCTAATGCATATCGT
GGAACTCATTTTCACTGTAGACACCCAAAagcgccaaaattagttccctt
aaggtagtagaAGAACTATTAATCAAGTCACCAAGAGGATTTAATAGTTT
AAAAACTTTGATTTAATTTAATCCACTTGATGTAATCTGTTAACTTCtgt
gttcttaaaaaattggtaaaaatcaaaaggaaacataaacaaaaaatgaa
ctTACTGTATGAGCTAATGGATTGCTCATATATTGTAAAATCAAATTAGC
CGCAGCAGGTGGGCATTCAACATTTGGAAATAACTCTGTCCATTCTGGTG
AATGTCGTTCATTGTCGTGTTCATAAATAATTAAATTAGGTTGCGGTATT
CCGATTGACTTTGCTGAAGTGCAGATTATGTTGAAGTCTTCCCCATTGTT
TACAATATAATAATTGAAATACTTCCCAAGTGCTGATTTATCCACATATT
TACATAATGGACNCAGATTATGTTGAAGTCTTCCCCATTGTTTACAATAT
AATAATTGAAATACTTCCCAAGTGCTGATTTATCCACATATTTACATAAT
GGACCAATGGGTACCTTTGAAAGCTATGAAGaacataaaaaaaatacaat
ttagaTTACAAATTTTGC
Run BLAST on NCBI

transcript from alignment at sc0000339:158349..159066

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019960 ID=TCONS_00019960|Name=TCONS_00019960|organism=Clytia hemisphaerica|type=transcript|length=718bp|location=Sequence derived from alignment at sc0000339:158349..159066 (Clytia hemisphaerica)
GCAAAATTTGTAAtctaaattgtattttttttatgttCTTCATAGCTTTC
AAAGGTACCCATTGGTCCATTATGTAAATATGTGGATAAATCAGCACTTG
GGAAGTATTTCAATTATTATATTGTAAACAATGGGGAAGACTTCAACATA
ATCTGNGTCCATTATGTAAATATGTGGATAAATCAGCACTTGGGAAGTAT
TTCAATTATTATATTGTAAACAATGGGGAAGACTTCAACATAATCTGCAC
TTCAGCAAAGTCAATCGGAATACCGCAACCTAATTTAATTATTTATGAAC
ACGACAATGAACGACATTCACCAGAATGGACAGAGTTATTTCCAAATGTT
GAATGCCCACCTGCTGCGGCTAATTTGATTTTACAATATATGAGCAATCC
ATTAGCTCATACAGTAagttcattttttgtttatgtttccttttgatttt
taccaattttttaagaacacaGAAGTTAACAGATTACATCAAGTGGATTA
AATTAAATCAAAGTTTTTAAACTATTAAATCCTCTTGGTGACTTGATTAA
TAGTTCTtctactaccttaagggaactaattttggcgctTTTGGGTGTCT
ACAGTGAAAATGAGTTCCACGATATGCATTAGAAATCCTTGAAAACCcct
aagaaaatgaaagaatttaggCAAATATTTGGTGTCTatcgctaaaatta
gttccgcaaaaTGATGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011207XLOC_011207Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019960-exon-sc0000339-1491911889:158349..159066TCONS_00019960-exon-sc0000339-1491911889:158349..159066Clytia hemisphaericaexon
TCONS_00019960-exon-sc0000339-1510915933:158349..159066TCONS_00019960-exon-sc0000339-1510915933:158349..159066Clytia hemisphaericaexon
TCONS_00019960-exon-sc0000339-1575043694:158349..159066TCONS_00019960-exon-sc0000339-1575043694:158349..159066Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:158349..159066 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.657969	0.22283	0.358446	0.755039	0.998505	0.654781	2.54219	1.48545	0.648982	0.577692	0	0	0	0	0	0	0.0673908	0	0	0	0.374174	0.935035	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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