TCONS_00019956 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019956
Unique NameTCONS_00019956
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length616

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019956 ID=TCONS_00019956|Name=TCONS_00019956|organism=Clytia hemisphaerica|type=transcript|length=616bp
ATGGCTCGCAAAGACTGTCCAGCATTCAATAAGAATTGTGGTAATTGCGG
AATCAAGGGTCATTTCCGCGCCGTATGTATGAAAGGCACAGCGAGTCGTT
CCCAAGCAAGCGCCGTGGGAGAAGCATCCCACCCACAACAGCAAGAAGAA
AGCCAACTAGAGGACGTGCCATCCTTCGCATTCGCAACACCCGCTGAGGA
TTTTCGTTTTGCCCCGTCCTCGAACAACCGGCCCTAGCGAACGCCACCGT
TCCTTCCCACATGGAATGGAGAGGCAACTCGTTCACACCAACTCGCCCCG
AAAGCCCACCGAAAATTGACGTGTCCATCAAAATACTCAAACAGACCCAC
GGGCAGTTTGGTAAGAGGAACGGCCCCATTATAACGGACACACTCACCGA
AGCTATAGCAGATAGCGGATGCCAAACATGCACTGCCGGACCCGAACTgt
taaataaactgaaatgcccATACGCCTACCTCGTAAAAACCAAACATAAA
ATTGTAGGCATCACTCACGCCCCTCTCGATATATTGGGCACGCTCTTCCT
CCACATCACTTACGGAGGGCGCTCATCGAGTCAAATGGTTTACATTTCGA
AAAACTGTAAAGGGTT
Run BLAST on NCBI

protein sequence of TCONS_00019956-protein

>TCONS_00019956-protein ID=TCONS_00019956-protein|Name=TCONS_00019956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MEWRGNSFTPTRPESPPKIDVSIKILKQTHGQFGKRNGPIITDTLTEAIA
DSGCQTCTAGPELLNKLKCPYAYLVKTKHKIVGITHAPLDILGTLFLHIT
YGGRSSSQMVYISKNCKG
Run BLAST on NCBI

transcript from alignment at sc0000339:98442..99057

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019956 ID=TCONS_00019956|Name=TCONS_00019956|organism=Clytia hemisphaerica|type=transcript|length=616bp|location=Sequence derived from alignment at sc0000339:98442..99057 (Clytia hemisphaerica)
AACCCTTTACAGTTTTTCGAAATGTAAACCATTTGACTCGATGAGCGCCC
TCCGTAAGTGATGTGGAGGAAGAGCGTGCCCAATATATCGAGAGGGGCGT
GAGTGATGCCTACAATTTTATGTTTGGTTTTTACGAGGTAGGCGTATggg
catttcagtttatttaacAGTTCGGGTCCGGCAGTGCATGTTTGGCATCC
GCTATCTGCTATAGCTTCGGTGAGTGTGTCCGTTATAATGGGGCCGTTCC
TCTTACCAAACTGCCCGTGGGTCTGTTTGAGTATTTTGATGGACACGTCA
ATTTTCGGTGGGCTTTCGGGGCGAGTTGGTGTGAACGAGTTGCCTCTCCA
TTCCATGTGGGAAGGAACGGTGGCGTTCGCTAGGGCCGGTTGTTCGAGGA
CGGGGCAAAACGAAAATCCTCAGCGGGTGTTGCGAATGCGAAGGATGGCA
CGTCCTCTAGTTGGCTTTCTTCTTGCTGTTGTGGGTGGGATGCTTCTCCC
ACGGCGCTTGCTTGGGAACGACTCGCTGTGCCTTTCATACATACGGCGCG
GAAATGACCCTTGATTCCGCAATTACCACAATTCTTATTGAATGCTGGAC
AGTCTTTGCGAGCCAT

Coding sequence (CDS) from alignment at sc0000339:98442..99057

>TCONS_00019956 ID=TCONS_00019956|Name=TCONS_00019956|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0000339:98442..99057 (Clytia hemisphaerica)
CCCTTTACAGTTTTTCGAAATGTAAACCATTTGACTCGATGAGCGCCCTC
CGTAAGTGATGTGGAGGAAGAGCGTGCCCAATATATCGAGAGGGGCGTGA
GTGATGCCTACAATTTTATGTTTGGTTTTTACGAGGTAGGCGTATgggca
tttcagtttatttaacAGTTCGGGTCCGGCAGTGCATGTTTGGCATCCGC
TATCTGCTATAGCTTCGGTGAGTGTGTCCGTTATAATGGGGCCGTTCCTC
TTACCAAACTGCCCGTGGGTCTGTTTGAGTATTTTGATGGACACGTCAAT
TTTCGGTGGGCTTTCGGGGCGAGTTGGTGTGAACGAGTTGCCTCTCCATT
CCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011203XLOC_011203Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019956-proteinTCONS_00019956-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019956-exon-sc0000339-1491911889:98442..99057TCONS_00019956-exon-sc0000339-1491911889:98442..99057Clytia hemisphaericaexon
TCONS_00019956-exon-sc0000339-1510915933:98442..99057TCONS_00019956-exon-sc0000339-1510915933:98442..99057Clytia hemisphaericaexon
TCONS_00019956-exon-sc0000339-1575043694:98442..99057TCONS_00019956-exon-sc0000339-1575043694:98442..99057Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:98442..99057 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0836191	0	0	0	0.32013	0.0928913	0.177341	0.277701	0	0.0909866	0	0.138271	0.596786	0.547351	0.243662	0.0896248	0.381796	0.134142	0.611873	0.980788	0.202186	0	0.244779	0	0.117001	0	0.160925	0.0657275	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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