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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019954 ID=TCONS_00019954|Name=TCONS_00019954|organism=Clytia hemisphaerica|type=transcript|length=1126bp
TTCCATTTTGCAAAGCCTTAGCACATGAAACTATTagtatcaaaataaag
aaaaaaccttaaaaagttATACGAGATTGAATACAGAAGATCAAATTGAG
AACAACTTGGAATTGAAAACCATATTATAAATCCTTAATATAAACTAATA
TCACTCAACCACCAGAGGTAAGAGATCTCTTGGGACACGCATCAAAAAAT
ATTCGGGAATATACACTTTTTCCCAGAACAATCGAGTATTAGTAATGATT
TTTTGTTGAAGTTCTAAGTCTGGTAGAATCCTTTCTACATGAGAAGGTCC
TTTATAACAGTAAAGAATAAAGTCACAAAAATCAGTTTCTGTTATCAAAA
GCTGCAGTTGAATTTGGTAATAGTACATATGGCATTTCTTCAATACTAAT
TTTCCATCAGATAATTTAAAACATTGTCGTGCTACCTCAGCTTTTGGACA
TTCTTCATTCACAATATCAGAAACAGTAtgcagtttcaaaatttttaaac
atttaactTCCAAAATTCCCTGAATTTTACCATCGTTGATAAGAAGACCA
TCTGGACTAGCTGCTAAATGTGCGTACTTTTTATTGATCCACAGTCCACT
TAAAGTAACTGAAGCATTCCTTTTCTCTCCGTACTCTTTCAATGCAATCT
TTTCGTATTCTACCCCATACTGCATGTAGATGCTTGTGCAATTAGAGGGA
AACCAAAGTTTCTTACTTATGAACGAAAAATGTGGATGGAAAGAGTCATA
CTCTGAAAAATTTCCCCCCCAGAGTAACTGCAGTTTTGCAGGTTGAAGCA
GTGATACGAAGCCTCCTTTGGCGATGCCATTGAACAGAATCTGCTTGGTC
ATCAGTACCTGGTATTTCTCCGaaagttttatatttaaaaaattcactgT
TTTCTCtttcaatgttttcaatgaaatacAGAGTCAAATTACAGTACACT
TCAATGTCAGCTTGCTCTAGTTTGAAGTTTTCATAGCGTAGTGGCAAGAG
TGATTCCCACATTGATGGCTTAGGGTCAGACTGCATAGAGacaataaatt
cttttgttgattCGCTGGAAACCTTTCTCATAGATTCCGGCTTTGGATCA
AAATTATACAATTCAGATGGTCGCCT Run BLAST on NCBI protein sequence of TCONS_00019954-protein >TCONS_00019954-protein ID=TCONS_00019954-protein|Name=TCONS_00019954-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MTKQILFNGIAKGGFVSLLQPAKLQLLWGGNFSEYDSFHPHFSFISKKLW
FPSNCTSIYMQYGVEYEKIALKEYGEKRNASVTLSGLWINKKYAHLAASP
DGLLINDGKIQGILEVKCLKILKLHTVSDIVNEECPKAEVARQCFKLSDG
KLVLKKCHMYYYQIQLQLLITETDFCDFILYCYKGPSHVERILPDLELQQ
KIITNTRLFWEKVYIPEYFLMRVPRDLLPLVVE Run BLAST on NCBI transcript from alignment at sc0000339:31388..32513 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019954 ID=TCONS_00019954|Name=TCONS_00019954|organism=Clytia hemisphaerica|type=transcript|length=1126bp|location=Sequence derived from alignment at sc0000339:31388..32513 (Clytia hemisphaerica)
AGGCGACCATCTGAATTGTATAATTTTGATCCAAAGCCGGAATCTATGAG
AAAGGTTTCCAGCGaatcaacaaaagaatttattgtCTCTATGCAGTCTG
ACCCTAAGCCATCAATGTGGGAATCACTCTTGCCACTACGCTATGAAAAC
TTCAAACTAGAGCAAGCTGACATTGAAGTGTACTGTAATTTGACTCTgta
tttcattgaaaacattgaaaGAGAAAAcagtgaattttttaaatataaaa
ctttCGGAGAAATACCAGGTACTGATGACCAAGCAGATTCTGTTCAATGG
CATCGCCAAAGGAGGCTTCGTATCACTGCTTCAACCTGCAAAACTGCAGT
TACTCTGGGGGGGAAATTTTTCAGAGTATGACTCTTTCCATCCACATTTT
TCGTTCATAAGTAAGAAACTTTGGTTTCCCTCTAATTGCACAAGCATCTA
CATGCAGTATGGGGTAGAATACGAAAAGATTGCATTGAAAGAGTACGGAG
AGAAAAGGAATGCTTCAGTTACTTTAAGTGGACTGTGGATCAATAAAAAG
TACGCACATTTAGCAGCTAGTCCAGATGGTCTTCTTATCAACGATGGTAA
AATTCAGGGAATTTTGGAagttaaatgtttaaaaattttgaaactgcaTA
CTGTTTCTGATATTGTGAATGAAGAATGTCCAAAAGCTGAGGTAGCACGA
CAATGTTTTAAATTATCTGATGGAAAATTAGTATTGAAGAAATGCCATAT
GTACTATTACCAAATTCAACTGCAGCTTTTGATAACAGAAACTGATTTTT
GTGACTTTATTCTTTACTGTTATAAAGGACCTTCTCATGTAGAAAGGATT
CTACCAGACTTAGAACTTCAACAAAAAATCATTACTAATACTCGATTGTT
CTGGGAAAAAGTGTATATTCCCGAATATTTTTTGATGCGTGTCCCAAGAG
ATCTCTTACCTCTGGTGGTTGAGTGATATTAGTTTATATTAAGGATTTAT
AATATGGTTTTCAATTCCAAGTTGTTCTCAATTTGATCTTCTGTATTCAA
TCTCGTATaactttttaaggttttttctttattttgatactAATAGTTTC
ATGTGCTAAGGCTTTGCAAAATGGAA Coding sequence (CDS) from alignment at sc0000339:31388..32513 >TCONS_00019954 ID=TCONS_00019954|Name=TCONS_00019954|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0000339:31388..32513 (Clytia hemisphaerica)
ATGACCAAGCAGATTCTGTTCAATGGCATCGCCAAAGGAGGCTTCGTATC
ACTGCTTCAACCTGCAAAACTGCAGTTACTCTGGGGGGGAAATTTTTCAG
AGTATGACTCTTTCCATCCACATTTTTCGTTCATAAGTAAGAAACTTTGG
TTTCCCTCTAATTGCACAAGCATCTACATGCAGTATGGGGTAGAATACGA
AAAGATTGCATTGAAAGAGTACGGAGAGAAAAGGAATGCTTCAGTTACTT
TAAGTGGACTGTGGATCAATAAAAAGTACGCACATTTAGCAGCTAGTCCA
GATGGTCTTCTTATCAACGATGGTAAAATTCAGGGAATTTTGGAagttaa
atgtttaaaaattttgaaactgcaTACTGTTTCTGATATTGTGAATGAAG
AATGTCCAAAAGCTGAGGTAGCACGACAATGTTTTAAATTATCTGATGGA
AAATTAGTATTGAAGAAATGCCATATGTACTATTACCAAATTCAACTGCA
GCTTTTGATAACAGAAACTGATTTTTGTGACTTTATTCTTTACTGTTATA
AAGGACCTTCTCATGTAGAAAGGATTCTACCAGACTTAGAACTTCAACAA
AAAATCATTACTAATACTCGATTGTTCTGGGAAAAAGTGTATATTCCCGA
ATATTTTTTGATGCGTGTCCCAAGAGATCTCTTACCTCTGGTGGTTGAGT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019954-exon-sc0000339-1491911889:31388..32513 | TCONS_00019954-exon-sc0000339-1491911889:31388..32513 | Clytia hemisphaerica | exon |
| TCONS_00019954-exon-sc0000339-1510915933:31388..32513 | TCONS_00019954-exon-sc0000339-1510915933:31388..32513 | Clytia hemisphaerica | exon |
| TCONS_00019954-exon-sc0000339-1575043694:31388..32513 | TCONS_00019954-exon-sc0000339-1575043694:31388..32513 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000339 | supercontig | sc0000339:31388..32513 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004518 | nuclease activity |
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0004518 |
nuclease activity |
Blast
The following BLAST results are available for this feature:
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