TCONS_00019949 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019949
Unique NameTCONS_00019949
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length538

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019949 ID=TCONS_00019949|Name=TCONS_00019949|organism=Clytia hemisphaerica|type=transcript|length=538bp
AAGTGATTTCAGACTCTCAACTTTCAATATTTATTCTGAAAtggagaaaa
acaaagattGCCCACCGGAGATTAAGGAATTTTTATACACGCTGACGGAG
CTCTGTCGACTTGCTTACCTCCCAGCCTTAAAGCGAAATCCCAGGATCGT
GTTGAGGGCATACAACATCACGTACCGGCATGCGATGTCGTGCAACCAAA
TTTTCGGGAAGAACCCTAAGCTGACCAAATTCTATGGTACGTACTACCAT
GCACTGACGACACATCTTGCTGAAGTATACAAACTTATTTCTCCCTCATC
TCTTTACACGGAGAGTGAGGAGCGGATATTCGCGATTATTCGTGCCATCG
TCAAAGCCACATCAAGCAGAACTAAGGAATCAATCAGGGATATAGGCTTG
ATAAGATACCAAACTGAGAAGGCTTTCGAGAAGAAATATGGAGCGCGCAA
AAAGGAAGGCAACGAATCAAGGGTGTCCTAGTATCAAACATTGATCTAGA
AACACCCAAACTCAAAGTTTCATCTCGGAGAATGTGGC
Run BLAST on NCBI

protein sequence of TCONS_00019949-protein

>TCONS_00019949-protein ID=TCONS_00019949-protein|Name=TCONS_00019949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
SDFRLSTFNIYSEMEKNKDCPPEIKEFLYTLTELCRLAYLPALKRNPRIV
LRAYNITYRHAMSCNQIFGKNPKLTKFYGTYYHALTTHLAEVYKLISPSS
LYTESEERIFAIIRAIVKATSSRTKESIRDIGLIRYQTEKAFEKKYGARK
KEGNESRVS
Run BLAST on NCBI

transcript from alignment at sc0000339:140699..141883-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019949 ID=TCONS_00019949|Name=TCONS_00019949|organism=Clytia hemisphaerica|type=transcript|length=1185bp|location=Sequence derived from alignment at sc0000339:140699..141883- (Clytia hemisphaerica)
AAGTGATTTCAGACTCTCAACTTTCAATATTTATTCTGAAATGGAGAAAA
ACAAAGATTGCCCACCGGAGATTAAGGTATAGCTTTATGTGGTATAGAAG
ATTATGCTTTCGATTTCCGATTTTAGGAAACTGAAAGAGTGTAAAAATTA
ACTGTATCCCTATTCCTAGGCTAAACAGAGATGGAGAGATGGAGAGGTGT
GAAACGATTCCCTGTTTTCCTTGTTATTATATATAATTTTTCTCATCCCT
CAGGAATTTTTATACACGCTGACGGAGCTCTGTCGACTTGCTTACCTCCC
AGCCTTAAAGCGAAATCCCAGGATCGTGTTGAGGGCATACAACATCACGT
ACCGGCATGCGATGTCGTGCAACCAAATTTTCGGGAAGAACCCTAAGCTG
ACCAAATTCTATGGTACGTACTACCATGCACTGACGACACATCTTGCTGA
AGTATACAAACTTATTTCTCCCTCATCTCTTTACACGGAGAGTGAGGAGC
GGATATTCGCGATTATTCGTGCCATCGTCAAAGCCACATCAAGCAGAACT
AAGGAATCAATCAGGGATATAGGCTTGATAAGGTGAGTCTCTGAAACTTT
GTTAGATATGAACACAAATTCTACAGACATTTTTGACTTTGGGTCGCTTG
AAATACCATCAGATGCATTAAATATTTTCATAACCATATACTAACTAACA
GTTTATGAGAGCAATTATTAAAGTATTGACCGACATCAAAGAGTATTGTT
TATATCACTCGGGTAATAATGTTGATTGTCCTTTGTAAAAACAAAGATCT
TATTCCTAATAATCTCTTCTATTAGATACCAAACTGAGAAGGCTTTCGAG
AAGAAATATGGAGCGCGCAAAAAGGAAGGCAACGAATCAAGGGTGTCCTA
GTATCAAACATTGATCTGTAAGTATTCATAGTTTAAATCCCTGTCTCAGT
GCCCCGATGGAACTTTTTCCATCAGGGGGGGGGGGGGATAATTTTTTATC
GAATCCCAATTGGAGTGCAATCTTTTCCATTCACTTTATAATGGGGATAA
ATCATAGGCTACTTTCCCAGTGGGGTTAGAATTTAGGGTATTTTTCCCAC
CAGGGACGATTTTCATTTAAAAACTTAATATGTTATATATTTAGAGAAAC
ACCCAAACTCAAAGTTTCATCTCGGAGAATGTGGC

Coding sequence (CDS) from alignment at sc0000339:140699..141883-

>TCONS_00019949 ID=TCONS_00019949|Name=TCONS_00019949|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at sc0000339:140699..141883- (Clytia hemisphaerica)
ATACCAAACTGAGAAGGCTTTCGAGAAGAAATATGGAGCGCGCAAAAAGG
AAGGCAACGAATCAAGGGTGTCCTAGGAATTTTTATACACGCTGACGGAG
CTCTGTCGACTTGCTTACCTCCCAGCCTTAAAGCGAAATCCCAGGATCGT
GTTGAGGGCATACAACATCACGTACCGGCATGCGATGTCGTGCAACCAAA
TTTTCGGGAAGAACCCTAAGCTGACCAAATTCTATGGTACGTACTACCAT
GCACTGACGACACATCTTGCTGAAGTATACAAACTTATTTCTCCCTCATC
TCTTTACACGGAGAGTGAGGAGCGGATATTCGCGATTATTCGTGCCATCG
TCAAAGCCACATCAAGCAGAACTAAGGAATCAATCAGGGATATAGGCTTG
ATAAGAGTGATTTCAGACTCTCAACTTTCAATATTTATTCTGAAATGGAG
AAAAACAAAGATTGCCCACCGGAGATTAAGATACCAAACTGAGAAGGCTT
TCGAGAAGAAATATGGAGCGCGCAAAAAGGAAGGCAACGAATCAAGGGTG
TCCTAGGAATTTTTATACACGCTGACGGAGCTCTGTCGACTTGCTTACCT
CCCAGCCTTAAAGCGAAATCCCAGGATCGTGTTGAGGGCATACAACATCA
CGTACCGGCATGCGATGTCGTGCAACCAAATTTTCGGGAAGAACCCTAAG
CTGACCAAATTCTATGGTACGTACTACCATGCACTGACGACACATCTTGC
TGAAGTATACAAACTTATTTCTCCCTCATCTCTTTACACGGAGAGTGAGG
AGCGGATATTCGCGATTATTCGTGCCATCGTCAAAGCCACATCAAGCAGA
ACTAAGGAATCAATCAGGGATATAGGCTTGATAAGAGTGATTTCAGACTC
TCAACTTTCAATATTTATTCTGAAATGGAGAAAAACAAAGATTGCCCACC
GGAGATTAAGATACCAAACTGAGAAGGCTTTCGAGAAGAAATATGGAGCG
CGCAAAAAGGAAGGCAACGAATCAAGGGTGTCCTAGGAATTTTTATACAC
GCTGACGGAGCTCTGTCGACTTGCTTACCTCCCAGCCTTAAAGCGAAATC
CCAGGATCGTGTTGAGGGCATACAACATCACGTACCGGCATGCGATGTCG
TGCAACCAAATTTTCGGGAAGAACCCTAAGCTGACCAAATTCTATGGTAC
GTACTACCATGCACTGACGACACATCTTGCTGAAGTATACAAACTTATTT
CTCCCTCATCTCTTTACACGGAGAGTGAGGAGCGGATATTCGCGATTATT
CGTGCCATCGTCAAAGCCACATCAAGCAGAACTAAGGAATCAATCAGGGA
TATAGGCTTGATAAGAGTGATTTCAGACTCTCAACTTTCAATATTTATTC
TGAAATGGAGAAAAACAAAGATTGCCCACCGGAGATTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011197XLOC_011197Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019949-proteinTCONS_00019949-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019949-exon-sc0000339-1575043694:141808..141883TCONS_00019949-exon-sc0000339-1575043694:141808..141883Clytia hemisphaericaexon
TCONS_00019949-exon-sc0000339-1575043694:141302..141630TCONS_00019949-exon-sc0000339-1575043694:141302..141630Clytia hemisphaericaexon
TCONS_00019949-exon-sc0000339-1575043694:140967..141058TCONS_00019949-exon-sc0000339-1575043694:140967..141058Clytia hemisphaericaexon
TCONS_00019949-exon-sc0000339-1575043694:140699..140739TCONS_00019949-exon-sc0000339-1575043694:140699..140739Clytia hemisphaericaexon
TCONS_00019949-exon-sc0000339-1510915933:141808..141883TCONS_00019949-exon-sc0000339-1510915933:141808..141883Clytia hemisphaericaexon
TCONS_00019949-exon-sc0000339-1510915933:141302..141630TCONS_00019949-exon-sc0000339-1510915933:141302..141630Clytia hemisphaericaexon
TCONS_00019949-exon-sc0000339-1510915933:140967..141058TCONS_00019949-exon-sc0000339-1510915933:140967..141058Clytia hemisphaericaexon
TCONS_00019949-exon-sc0000339-1510915933:140699..140739TCONS_00019949-exon-sc0000339-1510915933:140699..140739Clytia hemisphaericaexon
TCONS_00019949-exon-sc0000339-1491911889:141808..141883TCONS_00019949-exon-sc0000339-1491911889:141808..141883Clytia hemisphaericaexon
TCONS_00019949-exon-sc0000339-1491911889:141302..141630TCONS_00019949-exon-sc0000339-1491911889:141302..141630Clytia hemisphaericaexon
TCONS_00019949-exon-sc0000339-1491911889:140967..141058TCONS_00019949-exon-sc0000339-1491911889:140967..141058Clytia hemisphaericaexon
TCONS_00019949-exon-sc0000339-1491911889:140699..140739TCONS_00019949-exon-sc0000339-1491911889:140699..140739Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:140699..141883 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07835	0.210312	0	0.119452	1.45422	1.37897	1.66367	1.03834	0.363482	1.12558	0	0.215453	0.573742	0.446877	1.40834	1.7085	2.26664	1.74242	1.8341	1.31948	0.521305	0.305129	0.370925	0.224816	0.694667	0	0.44359	0.631215	0.359066	0.609718
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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