TCONS_00019943 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019943
Unique NameTCONS_00019943
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2561

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019943 ID=TCONS_00019943|Name=TCONS_00019943|organism=Clytia hemisphaerica|type=transcript|length=2561bp
NNGACGACCCCGAATCTGAAATCATCGAAAAGAAGAAATCAGACGGTACC
ATCATCCGCGTGCGTCGTCGCGCGGTCAATGTGCACGTCCGCAAGCCCGC
TCATACGCGCGTCACTATTTCGAGTCACCCTGTACGAAGACCCTCAAATG
AAGACGCTGATTTGAGTTATGAAGAAATCCCTGTCGATGAGAATAGCCCT
GTGCATTTTGATAAGAATATCTGGGAAGAATACGACAAAGTGATGCCCGA
CGGAACCACGAAGAAATACCGACGTCGTTACATTTCTAAGTGCAACGTAA
TCTTGAAGAAACCATCGTTCCGCGCTGAACCGACTCCAGTTGAAACGTCT
TCCAATTTGTCCAGTGACGTCAAATATGAAGAGGTGGAAATCGGACCTGA
CGACGAACAAGACTTCAACAAGGACGACTGGGAAGTGATCGAGAAAGAAC
AACCAGACGGCACAAAGAAGCGTTTCCGTCGTCGCGTCATCACAACTACC
GTTATGACGACGTATACTACTACGCGTTACGTCATCAATGCCGACGGAGA
GGAAGATAACATGATGGAGAGCAAACCCATCGAAACGACTACCCTGACGT
TTGTGGATGGCAAACCTGTCGCCACGAGTTCACAAGATGGATTGGATGAG
TCGTTAAGTCCAGTTGAAATGAGTATGAGTATGGACGACCTTATCAGTAA
AATCAATCAAATGTCCACCAGTCTGGAACAGCCGGCCCCTGAAAAACCGG
CTCCAAAGAAGAACGTGGTCACTATCGAGACCATCACCCCGGCAACGACA
TTTGTTGTCGAAAGCGCGCCTTATGACGAGGAAGAAGCGCGAAAACGACA
AGAAGAGGAACGATTGGAACAAGAAGGGTTGAACGCAACCATCGATTCCA
TTTTCACCCTTCCAGATGATGACGAAGTTCGACCTCTCTCCTCACGACGA
AGCACGTACGACGAAGACGCTTACAACGAATCGTTCGACCACGAACTCGA
AGAATACGGCGTCGAAGCTTTCCCCGATAACACCACGGCGGAGACTGACG
GCATCGATATCAACCTTCCGGATCCGACCGTTCgcaaaaagaaaccaaaa
acggCACCTAAACCGCGACGTCCGGAAAGTTTCGTGAAGATGACACCGAC
GCCGAGAAGTAGCGGGAGTGAGAGTGACGATCACAGAATGAATCGAACGA
AGAGCGACGCCAGCAACGAACAAAGAGATTATCGACCTCATTCGCAAGCC
GGTGATTCTGAGATCATTTATACGGTCACTGATGTCTCAATGGTGGAGCA
AGGTGCTGGTGGATTCGTCAAAGCCGTCAAAGCGAAACACGAAAATTTGG
CTCACGAAGAACAATCACCGCCAACGACACCAAAAGGACATGTGCCGACG
CGCACCATTTCTTTCGATGAGAACGATACTGCAAATGTCATCAAAACAAC
CGAGCCTCCCTCGGTACCGGTAGAAGTGACCACCATCATTCCTGCGGAAT
CCGAACTCCCAATCGAAGATGTCATCTTTGAAACGAACCAACCTCAAGAA
GAATCCTTCCCTGATATGGAGGAGAACATCGAAGCAATGGAAGTTCCCGA
AGTCGAAACCGAAGTCATCCTCATCAAACAAGTTTCCAACGAAGATGTCC
GTGTCGCACCACCGAACAGCGAGCCGGGAGTTGTTCGCACACGACCCTTC
AGTTTACCGCGACAGGACACTCAAGTCATCAAGACGGAGATTATCGAGGT
GGATCTGACGCCATCTCAGATGGAGAGCTTCACAGAAGACGAAGGAGACT
TTGTTGTGAACACAGAACAACTACCAACGGAAGTCATTACCAAAACAATC
ACCATCGAAGGTGACTCCACCGAATTCACGCAAGAAGAAATCCAGAAATT
GTTGAGCCAGGCTCCTGAACAAGTCGGCGACATCGGAAGCATCACCTCCA
CACAAGTCGTCCGAATGTTGCGTGAAGCAGTCACGTCAGAGACGAATCAG
ATGGTGACGACAGATGAGGATGGCAACGTCATCATCACAGCCATTCAAGA
TGAAATCGTAGAAGTGGATGATGACGGTGATGATACTGAAGTCTAATTTA
CCGAACGAATGAAGTTTACCGAACCATATTTTTATTGTAACTTATTTTAA
cgattttagtttttatttactTAGGACTGAGGATTATTTTTAACTTAGAA
GTATTTgaccttttttatattttacgcTGAAATCTGTCACTGACATGGAC
TAGGAGTTTTACCAAATGCCTCCCAAGTCAACCAAGTTGCACAGTCTTCT
GCGTCGGATAATTTATTTGCCACattattttatcataatttgtAACGCAT
AACATATtcacttcttttttatttaaaataaactTGCATACTTTGGAAGT
TTTAATCGTGTTAATTCATTTCAGAAGGAACTGGTTTAAATACTAATAAA
TTGGggtcttccagaaaatgtccgtacatgggggttggaggatatagtgt
tcaggggtagtgaaaaatctataaatttgccttgtccgggagTAAACATG
CTCTTTTTGGG
Run BLAST on NCBI

transcript from alignment at sc0000339:301513..306711+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019943 ID=TCONS_00019943|Name=TCONS_00019943|organism=Clytia hemisphaerica|type=transcript|length=5199bp|location=Sequence derived from alignment at sc0000339:301513..306711+ (Clytia hemisphaerica)
NNGACGACCCCGAATCTGAAATCATCGAAAAGAAGAAATCAGACGGTACC
ATCATCCGCGTGCGTCGTCGCGCGGTCAATGTGCACGTCCGCAAGCCCGC
TCATACGCGCGTCACTATTTCGAGTCACCCTGTACGAAGACCCTCAAATG
AAGACGCTGATTTGAGTTATGAAGAAATCCCTGTCGATGAGAATAGCCCT
GTGCATTTTGATAAGAATGTAAGATGTTCACCTTACCGTCTagaaaagat
tttgctttgaaTTTCACCATGGAAATGAAAACTTTCTTTGTCAGAGCTAT
TCACGCTTCTCAAGAATACTTTAATAATCTTTCTTTGCAATTTTGACCTA
AAAATATGTAGTGATTATTGTTCACTTTATAAACTAAATATGGCCTTCTT
TTAGATCTGGGAAGAATACGACAAAGTGATGCCCGACGGAACCACGAAGA
AATACCGACGTCGTTACATTTCTAAGTGCAACGTAATCTTGAAGAAACCA
TCGTTCCGCGCTGAACCGACTCCAGTTGAAACGTCTTCCAATTTGTCCAG
TGACGTCAAATATGAAGAGGTGGAAATCGGACCTGACGACGAACAAGACT
TCAACAAGGACGTAAGTTAActcctgttttctttttctccaTCAGTGATC
TTCCAATCTGTATTTTCTTCAGTCTAAATTTTAGACTTCGGTAATTTATA
TGAGTAATGGAGACGAGAGttgaaattgtaaatttttaccATAGGACTGG
GAAGTGATCGAGAAAGAACAACCAGACGGCACAAAGAAGCGTTTCCGTCG
TCGCGTCATCACAACTACCGTTATGACGACGTATACTACTACGCGTTACG
TCATCAATGCCGACGGAGAGGAAGATAACATGATGGAGAGCAAACCCATC
GAAACGACTACCCTGACGTTTGTGGATGGCAAACCTGTCGCCACGTACGA
TGAACTTCCTTTATCTCCTGTTTCTCCTGCTAAGACCAGTTTctttaaca
aatattttattttttctattttcgcaCTTTCTTCTTGATAATGTAATGTT
AATTTATTTTCTGCACTTTGATAGGAGTTCACAAGATGGATTGGATGAGT
CGTTAAGTCCAGTTGAAATGAGTATGAGTATGGACGACCTTATCAGTAAA
ATCAAGTAATTATCCATTCAttacattcattcattcattataCACAAACA
TTTCCCCATTTCGTTTTATGTTCTAACTACCACCTCTATAATGCATACAC
ACCGTTATCCCTTACTAATACATACACATTATAACCCAAGTAGAATTCTT
GCCTAGTCAGTAAGACATTTGCTAATCAAACTATTTTATTGCAGTCAAAT
GTCCACCAGTCTGGAACAGCCGGCCCCTGAAAAACCGGCTCCAAAGAAGA
ACGTGGTCACTATCGAGACCATCACCCCGGCAACGACATTTGTTGTCGAA
AGCGCGCCTTATGACGAGGAAGAAGCGCGAAAACGACAAGAAGAGGAACG
ATTGGAACAAGAAGGGTTGAACGCAACCATCGATTCCATTTTCACCCTTC
CAGATGATGACGAAGTTCGACCTCTCTCCTCACGTACGTCCCTTTAAGTT
TATCAACgactaaaaaaataaacatcCGATTGGTTTGTTAGAATCATGTA
TCGCCGATAATTCATTTTGACAATACCTTGTGTTTTACTTGACGTTTAAT
AACTGCTTCTTTTGGGTTGAATTTTTGCAATAGAGATATTAATTAAATCG
TAAATATCAAATGTGTAGGTACAgatgagtctccataactcgaataagCA
CGGGTGGCACAAACTTGTTCGAGATAAGGGAGTCACgtagtaaggtttat
aaggcattgttaattgAAGGTACGAAAAAGCTCGTTCGAGTTAAGAGACA
TTTAAGTttaagagactctactgtatataCAACATCTTAACACGTTTTGA
TTTTCCACCACAGGACGAAGCACGTACGACGAAGACGCTTACAACGAATC
GTTCGACCACGAACTCGAAGAATACGGCGTCGAAGCTTTCCCCGATAACA
CCACGGTATGTGgagatttttcatgttttgttagCTTCGCATCATTTCTC
CCCTTCTTATGGGCTTATACGTTGAGAACCTTTCCTTTTACCTCCACGCA
CTGCGGCTGACCTTCCAGTCAGGACTGCTTTATTTTGAACATCTCGGACC
TCTACAAATCCCCCTTAATTTTAATTTCAGGCGGAGACTGACGGCATCGA
TATCAACCTTCCGGATCCGACCGTTCgcaaaaagaaaccaaaaacggCAC
CTAAACCGCGACGTCCGGAAAGTTTCGTGAAGATGACACCGACGCCGAGA
AGTAGCGGGAGTGAGAGTGACGATCACAGGTATTTATGAAGAGAAGaaga
aagacaggagacagaCTGACTAATCTTTCATAATGTTTGTTCGCTTTTCa
tgattcattcattcatttcttCGAAAAATCCATTCATTCACCATTACATT
TATTCATTTACATTACATTTATCATATACTTCTGTTCAAATTCATTGACt
cgaaaatcaaaacataaatacCATACGATTTTTAAATGAATTATAAAGAT
TTGAATGTATCTAAACATATAATTTCGTAAAATGCACTtaaaataatatc
tttcttGCACCTTCAATTTTCCTTGGAGAGAATCTTAGggatttgttatt
gtttttgacGAGATTTTTGTGCGAATGTTTAGAATGAATCGAACGAAGAG
CGACGCCAGCAACGAACAAAGAGATTATCGACCTCATTCGCAAGCCGGTG
ATTCTGAGATCATTTATACGGTCACTGATGTCTCAATGGTGGAGCAAGGT
GCTGGTGGATTCGTCAAAGCCGTCAAAGGTATCTTTCTCACAAGTATTGT
TTTGATACTTGACGTTCTTCACAGAAACAGTATCTAAATAATGTATAAAA
GCGATTCAAAATAAATCGACGATATTTCATTGCTGACCTCAAGATTTCAA
AATGGAATTTTGTTACTGAAGAAACTTGTAAACAATCTTTTTTCGTTTCA
GCGAAACACGAAAATTTGGCTCACGAAGAACAATCACCGCCAACGACACC
AAAAGGACATGTGCCGACGCGCACCATTTCTTTCGATGAGAACGATACTG
CAAATGTCATCAAAACAACCGAGCCTCCCTCGGTACCGGTAGAAGTGACC
ACCATCATTCCTGCGGAATCCGAACTCCCAATCGAAGATGTCATCTTTGA
AACGAACCAAGTAAGCTTTCACATTTCATTCTTAGCGAACAAAATTCATT
TTCCAATATTAATATGTTATTCCTTTAAATCCGTTTATATATAGCTGTAA
AACGAGTGTTTTTACCAACAATTATAAATGTTATGATATTTTCTCCACCT
CTTCTCATGATCAGCCTCAAGAAGAATCCTTCCCTGATATGGAGGAGAAC
ATCGAAGCAATGGAAGTTCCCGAAGTCGAAACCGAAGTCATCCTCATCAA
ACAAGTTTCCAACGAAGATGTCCGTGTCGGTGAGATACTCTCCTTTCTTT
TTTTAACGTTCTGGGATTCATTAGTCATGATCAAATTCAGTTGTGCGTTA
GGTTGGTTAACTTAATCAATCTCTCCTTTACCGTTTCAGCACCACCGAAC
AGCGAGCCGGGAGTTGTTCGCACACGACCCTTCAGTTTACCGCGACAGGA
CACTCAAGTCATCAAGACGGAGATTATCGAGGTGGATCTGACGCCATCTC
AGATGGAGAGCTTCACAGAAGACGAAGGAGACTTTGTTGTGAACACAGAA
CAACTACCAACGGAAGTCATTACCAAAACAATCACCATCGAAGGTGACTC
CACCGAATTCACGCAAGAAGAAATCCAGAAATTGTTGAGCCAGGCTCCTG
AACAAGTCGGCGACATCGGAAGCATCACCTCCACACAAGTCGTCCGAGTA
AGATTAACAAATCTCCTGCTCTAGAGATAGAcaaattgtttttcaaagtt
ttatttgattattttaaaaGTTTAGTCTAACAAAAACCTACTTTTCCTCA
GCGTGAGGTATTCTACAATATTTTGTACGATTATCATTCTAATATGCACA
CACTTCCCAATCCCCCGTTTGCACACATACACAATTAACTATTTGCTAAC
TAACCTCTCTCTCACCACACAACAGACGACCACATTTCAGAAGACAATCA
CTGGTAAAACTATCACCGTTTCTGGAGACGCTGAAGATGACGAACTTCAA
AGGGTATGTGAACTAATCACTCAATCTACTTACCAACACATGCTATTAAT
ATGCACATTCAAAAGCATTCACTTTGATAATCCTTTCAGAGAGAGACTTC
TTTACACTTACCGTCCTCATTTTGAAAGTGTGGTTGCCAAGATTTTATTT
GACATTCTATCCTGATTATCTTGCAAGTCTCCACTGCAGATTATATATTA
AGGCAGACTTAAATAGGCTTTGAAGTTTGCACTTTTCTCTTTAGGGATTA
ATTATTTGATGCCTAAATGTCGGTTGAAGGGATTAGtgtatttgaaaaaa
taggcCTATGCAAACTTCGTTTGCCTCAAACATAATCCTCTTCACGTTTT
AGATGTTGCGTGAAGCAGTCACGTCAGAGACGAATCAGATGGTGACGACA
GATGAGGATGGCAACGTCATCATCACAGCCATTCAAGATGAAATCGTAGA
AGTGGATGATGACGGTGATGATACTGAAGTCTAATTTACCGAACGAATGA
AGTTTACCGAACCATATTTTTATTGTAACTTATTTTAAcgattttagttt
ttatttactTAGGACTGAGGATTATTTTTAACTTAGAAGTATTTgacctt
ttttatattttacgcTGAAATCTGTCACTGACATGGACTAGGAGTTTTAC
CAAATGCCTCCCAAGTCAACCAAGTTGCACAGTCTTCTGCGTCGGATAAT
TTATTTGCCACattattttatcataatttgtAACGCATAACATATtcact
tcttttttatttaaaataaactTGCATACTTTGGAAGTTTTAATCGTGTT
AATTCATTTCAGAAGGAACTGGTTTAAATACTAATAAATTGGggtcttcc
agaaaatgtccgtacatgggggttggaggatatagtgttcaggggtagtg
aaaaatctataaatttgccttgtccgggagTAAACATGCTCTTTTTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011194XLOC_011194Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019943-exon-sc0000339-1491911889:301513..301730TCONS_00019943-exon-sc0000339-1491911889:301513..301730Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1510915933:301513..301730TCONS_00019943-exon-sc0000339-1510915933:301513..301730Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1575043694:301513..301730TCONS_00019943-exon-sc0000339-1575043694:301513..301730Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1491911889:301917..302123TCONS_00019943-exon-sc0000339-1491911889:301917..302123Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1510915933:301917..302123TCONS_00019943-exon-sc0000339-1510915933:301917..302123Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1575043694:301917..302123TCONS_00019943-exon-sc0000339-1575043694:301917..302123Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1491911889:302257..302456TCONS_00019943-exon-sc0000339-1491911889:302257..302456Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1510915933:302257..302456TCONS_00019943-exon-sc0000339-1510915933:302257..302456Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1575043694:302257..302456TCONS_00019943-exon-sc0000339-1575043694:302257..302456Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1491911889:302587..302667TCONS_00019943-exon-sc0000339-1491911889:302587..302667Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1510915933:302587..302667TCONS_00019943-exon-sc0000339-1510915933:302587..302667Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1575043694:302587..302667TCONS_00019943-exon-sc0000339-1575043694:302587..302667Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1491911889:302857..303095TCONS_00019943-exon-sc0000339-1491911889:302857..303095Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1510915933:302857..303095TCONS_00019943-exon-sc0000339-1510915933:302857..303095Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1575043694:302857..303095TCONS_00019943-exon-sc0000339-1575043694:302857..303095Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1491911889:303476..303567TCONS_00019943-exon-sc0000339-1491911889:303476..303567Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1510915933:303476..303567TCONS_00019943-exon-sc0000339-1510915933:303476..303567Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1575043694:303476..303567TCONS_00019943-exon-sc0000339-1575043694:303476..303567Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1491911889:303743..303891TCONS_00019943-exon-sc0000339-1491911889:303743..303891Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1510915933:303743..303891TCONS_00019943-exon-sc0000339-1510915933:303743..303891Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1575043694:303743..303891TCONS_00019943-exon-sc0000339-1575043694:303743..303891Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1491911889:304245..304390TCONS_00019943-exon-sc0000339-1491911889:304245..304390Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1510915933:304245..304390TCONS_00019943-exon-sc0000339-1510915933:304245..304390Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1575043694:304245..304390TCONS_00019943-exon-sc0000339-1575043694:304245..304390Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1491911889:304564..304772TCONS_00019943-exon-sc0000339-1491911889:304564..304772Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1510915933:304564..304772TCONS_00019943-exon-sc0000339-1510915933:304564..304772Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1575043694:304564..304772TCONS_00019943-exon-sc0000339-1575043694:304564..304772Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1491911889:304927..305041TCONS_00019943-exon-sc0000339-1491911889:304927..305041Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1510915933:304927..305041TCONS_00019943-exon-sc0000339-1510915933:304927..305041Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1575043694:304927..305041TCONS_00019943-exon-sc0000339-1575043694:304927..305041Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1491911889:305152..305459TCONS_00019943-exon-sc0000339-1491911889:305152..305459Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1510915933:305152..305459TCONS_00019943-exon-sc0000339-1510915933:305152..305459Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1575043694:305152..305459TCONS_00019943-exon-sc0000339-1575043694:305152..305459Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1491911889:306115..306711TCONS_00019943-exon-sc0000339-1491911889:306115..306711Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1510915933:306115..306711TCONS_00019943-exon-sc0000339-1510915933:306115..306711Clytia hemisphaericaexon
TCONS_00019943-exon-sc0000339-1575043694:306115..306711TCONS_00019943-exon-sc0000339-1575043694:306115..306711Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:301513..306711 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.545233	3.13922	1.16533	3.22748	0.977462	1.59614	0.848014	0.667826	8.00165	12.2775	10.2975	5.00009	5.04598	6.34252	4.26795	7.32679	12.3487	12.409	9.06827	16.9029	7.88663	8.41443	4.3962	5.10795	1.34989	1.25051	3.97282	7.31473	12.7631	15.0797
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top