TCONS_00019939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019939
Unique NameTCONS_00019939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1136

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019939 ID=TCONS_00019939|Name=TCONS_00019939|organism=Clytia hemisphaerica|type=transcript|length=1136bp
GAATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATT
CCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCAAAGATTGGGA
AATCTCCAGTCGAAGAACCAGTTCAATATAATGAAGAAGTAGAGTTCGAT
GAAGCCAATCCTGATGATGATAAATATGATCCTGAGGAATGGGAAACAGT
CGAGAAGAAGATGCCTGATGGTTCAAAGAAGAAATTCCGCCGACGAATTA
TTGTTCTTAATGTTGTGAAGAAACAAAAGAGTGGGAAATCTCCAGTCGAG
GAAGAACCAGTTCAATATGAACAAGTGGAAGTTGATGAAGCCAATCCTGA
TGATGATAAATTTGATCCTAAGGAATGGGAAACGGTCGAGAATACGATGC
CTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTT
GTGAAGAAACCAAAGATTGGGAAATCTCCAGTCGAAGAACCCATTCAATA
TAATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGATGATAAATATG
ATCCTGAGGAATGGGAAACAGTCGAGAAGAAGATGCCTGATGGTTCAAAG
AAAAAGTTCCGCCGACGAACCATTGTTCTTAATGTTGTGAAGAAACCAAA
GAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGAAGAAGTGG
AAGTTGATGAAGCAAATCCTGATGATGATAAATATGATCCTAAGGAATGG
GAAACAGTCGAGAAGACGATGCCTGATGGTTCGAAGAAGAAATTCCGCCG
ACGAATCATTGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGAGATGAGG
AGAAACCGTCAGAAGTCGACGAAGAACCCATCGAATATGAAGAAGTTGAA
ATTGATGAAGCCAACCCTCAAGATGATCAATTTGATCCAAAAgagTGGGA
AGTTGTGGAGAAAGAAAAACCGAATGGCGACAAAGTACGCGTCAGACGGC
GTCGTGTCGTCATTTTGAAGATCGTGAAGGAGCCTGAAGATCTGGTGAAT
GAAAATGAAGTGACTGTCGAAGAAATGCCACTCAATGAAAATGCTCCAAC
ACAAGAAGATGATGACAAGTTTGACCCTGAGGTAAA
Run BLAST on NCBI

transcript from alignment at sc0000339:295095..298726+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019939 ID=TCONS_00019939|Name=TCONS_00019939|organism=Clytia hemisphaerica|type=transcript|length=3632bp|location=Sequence derived from alignment at sc0000339:295095..298726+ (Clytia hemisphaerica)
GAATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATT
CCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCAAAGATTGGGA
AATCTCCAGTCGAAGAACCAGTTCAATATAATGAAGAAGTAGAGTTCGAT
GAAGCCAATCCTGATGATGATAAATATGATCCTGAGGTATTTTTTATTTG
GGGAAAGCctttcaatgcaattttacaGGTGACGAGTTCAGTATTTTTTG
CTGGAATTTTTTACGTCTTTTcgttttataagaaatttttcaaaatcatt
ttaaactTTCTCATTTTCCTCTAGGAATGGGAAACAGTCGAGAAGAAGAT
GCCTGATGGTTCAAAGAAGAAATTCCGCCGACGAATTATTGTTCTTAATG
TTGTGAAGAAACAAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTT
CAATATGAACAAGTGGAAGTTGATGAAGCCAATCCTGATGATGATAAATT
TGATCCTAAGGTATCGTTAGCAcagaatttcttttttctaaaaacatcGG
GGTGACCTGGAGATTCGGAGAACGATCGCATTTGGCTGAAGTTTTGCGCA
CTCTGACATgtctctatttctttttttgcttgagacgAGCTNGGGGGAAC
GATCGGATTTGGCTTATATTTTGCGCACTCTGACATGTCTCTATtccttt
ttttgcttgagacgAGCTTTGTACGATAGCTTCGCGTTCTTATCAATTTA
TAATATACTAAATTTAAGCCCATTCGACTATGAAATAAAAAGTTGCCAAT
GTCTTTCATCTGCTTTCACTGCATTTTGAACTCAATCAACTTCACTTACT
TTCGTCTTCTTCAGGAATGGGAAACAGTCGAGAATACGATGCCTGATGGT
TCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAA
ACCCAAGAGTGGGAAATCTCTAGTCGAAGAACCAGTTCAATATTATGAAG
AAGTGGAAGTTGATGAAGCCAATCCTGATGATGATAAATTTGATCCTAAG
GTATCGTTAGCAcagaatttcttttttctaaaaacatcGGGGTGACCTGG
AGATTCGGAGAACGATCGCATTTGGCTGAAGTTTTGCGCACTCTGACATg
tctctatttctttttttgcttgagacgAGCTTTGTACGATAGCTTCGCGT
TCTTAGTTATtgagaaaatattgaatttaagCCCATTCGACTATGAAATA
AAAAGTTGCCAATGTCTTTCACCTGCTTTCACTGCAATATGAAGTCACTC
AACTTCacttactttcgttttcttcagGAATGGGAAACGGTCGAGAATAC
GATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTA
ATGTTGTGAAGAAACCAAAGATTGGGAAATCTCCAGTCGAAGAACCCATT
CAATATAATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGATGATAA
ATATGATCCTGAGGTATGTTTTTTTTGGGGAAAcctttcactgaaatttc
aggCAATTTTACAGTTTGCAGGTGACGAGTTCAGTATTTTTGCTGGAATT
TTTTACGTctctttgttttataagaaacttttcaaaatcattttaaactT
TCTCATTTTCCTCTAGGAATGGGAAACAGTCGAGAAGAAGATGCCTGATG
GTTCAAAGAAAAAGTTCCGCCGACGAACCATTGTTCTTAATGTTGTGAAG
AAACCAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGA
AGAAGTGGAAGTTGATGAAGCAAATCCTGATGATGATAAATATGATCCTA
AGGTATAGTTAGCACAGAATTTCTTTCTCTCTCTCACTTTAAAGCCAATA
TTGTGCATCTCCGAGTCATTTGATGTTTTTCAGGTCTCAAACGAGCCAGG
TCTACTCAAAtttacattatttttcaaatatctcCTCTAGGAATGGGAAA
CAGTCGAGAAGACGATGCCTGATGGTTCGAANGTTGTCAATGTCTTTCAC
TGCAATATGAAGTCACTCAACTTCacttactttcgttttcttcagGAATG
GGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTA
GACGTAATATCGTTCTTAATGTTGTGAAGAAACCAAAGATTGGGAAATCT
CCAGTCGAAGAACCCATTCAATATAATGAAGAAGTGGAAGTCGATGAAGC
CAATCCTGATGATGATAAATATGATCCTGAGGTATGTTTTTTTTGGGGAA
AcctttcactgaaatttcaggCAATTTTACAGTTTGCAGGTGACGAGTTC
AGTATTTTTGCTGGAATTTTTTACgtctttttgttttataagaaactttt
caaaatcattttaaactTTCTCATTTTCCTCTAGGAATGGGAAACAGTCG
AGAAGAAGATGCCTGATGGTTCAAAGAAGAAATTCCGCCGACGAACCATT
GTTCTTAATGTTGTGAAGAAACCAAAGAGTGGGAAATCTCCAGTCGAGGA
AGAACCAGTTCAATATGAAGAAGTGGAAGTTGATGAGGCAAATCCTGATG
ATGATAAATTTGATCCTAAGGTATTGTTTGCACAGAAtttctttctctct
ctctcacTTTAAAGCCAATATTGTGCATCTCCGAGTCATTTGATGTTTTT
CAGGTCTCAAACGAGCCAGATCTACTcaaatttacaatatttttcaaata
tctcCTCTAGGAATGGGAAACAGTCGAGAAGACGATGCCTGATGGTTCGA
AGAAGAAATTCCGCCGACGAATTATTGTTCTTAATGTTGTGAAGAAACCA
AAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGAAGAAGT
GGAAGTTGATGAAGCAAATCCTGATGATGATAAATATGATCCTAAGGTAT
AGTTAGCACAGAATTTCTTTCTCTCTCTCACTTTAAAGCCAATATTGTGC
ATCTCCGAGTCATTTGATGTTTTTCAGGTCTCAAACGAGCCAGGTCTACT
CAAAtttacattatttttcaaatatctcCTCTAGGAATGGGAAACAGTCG
AGAAGACGATGCCTGATGGTTCGAAGAAGAAATTCCGCCGACGAATCATT
GTTCTTAATGTTGTGAAGAAACCAAAGAGTGGAGATGAGGAGAAACCGTC
AGAAGTCGACGAAGAACCCATCGAATATGAAGAAGTTGAAATTGATGAAG
CCAACCCTCAAGATGATCAATTTGATCCAAAAGTAAATAATTGATGTGAC
TTTCTTCAGTTTCTCTTACTTCATTACCTATGCCACATTTTGACATCTTg
ttttttacaatttcttaacTTAACTTGATACATCACATTTTAGGCTTCCC
AggcagtcacaacttaaccatcttttaattttttttaggagTGGGAAGTT
GTGGAGAAAGAAAAACCGAATGGCGACAAAGTACGCGTCAGACGGCGTCG
TGTCGTCATTTTGAAGATCGTGAAGGAGCCTGAAGATCTGGTGAATGAAA
ATGAAGTGACTGTCGAAGAAATGCCACTCAATGAAAATGCTCCAACACAA
GAAGATGATGACAAGTTTGACCCTGAGGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011193XLOC_011193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019939-exon-sc0000339-1491911889:295095..295280TCONS_00019939-exon-sc0000339-1491911889:295095..295280Clytia hemisphaericaexon
TCONS_00019939-exon-sc0000339-1510915933:295095..295280TCONS_00019939-exon-sc0000339-1510915933:295095..295280Clytia hemisphaericaexon
TCONS_00019939-exon-sc0000339-1575043694:295095..295280TCONS_00019939-exon-sc0000339-1575043694:295095..295280Clytia hemisphaericaexon
TCONS_00019939-exon-sc0000339-1491911889:295419..295604TCONS_00019939-exon-sc0000339-1491911889:295419..295604Clytia hemisphaericaexon
TCONS_00019939-exon-sc0000339-1510915933:295419..295604TCONS_00019939-exon-sc0000339-1510915933:295419..295604Clytia hemisphaericaexon
TCONS_00019939-exon-sc0000339-1575043694:295419..295604TCONS_00019939-exon-sc0000339-1575043694:295419..295604Clytia hemisphaericaexon
TCONS_00019939-exon-sc0000339-1491911889:296422..296607TCONS_00019939-exon-sc0000339-1491911889:296422..296607Clytia hemisphaericaexon
TCONS_00019939-exon-sc0000339-1510915933:296422..296607TCONS_00019939-exon-sc0000339-1510915933:296422..296607Clytia hemisphaericaexon
TCONS_00019939-exon-sc0000339-1575043694:296422..296607TCONS_00019939-exon-sc0000339-1575043694:296422..296607Clytia hemisphaericaexon
TCONS_00019939-exon-sc0000339-1491911889:296761..296946TCONS_00019939-exon-sc0000339-1491911889:296761..296946Clytia hemisphaericaexon
TCONS_00019939-exon-sc0000339-1510915933:296761..296946TCONS_00019939-exon-sc0000339-1510915933:296761..296946Clytia hemisphaericaexon
TCONS_00019939-exon-sc0000339-1575043694:296761..296946TCONS_00019939-exon-sc0000339-1575043694:296761..296946Clytia hemisphaericaexon
TCONS_00019939-exon-sc0000339-1491911889:298179..298376TCONS_00019939-exon-sc0000339-1491911889:298179..298376Clytia hemisphaericaexon
TCONS_00019939-exon-sc0000339-1510915933:298179..298376TCONS_00019939-exon-sc0000339-1510915933:298179..298376Clytia hemisphaericaexon
TCONS_00019939-exon-sc0000339-1575043694:298179..298376TCONS_00019939-exon-sc0000339-1575043694:298179..298376Clytia hemisphaericaexon
TCONS_00019939-exon-sc0000339-1491911889:298533..298726TCONS_00019939-exon-sc0000339-1491911889:298533..298726Clytia hemisphaericaexon
TCONS_00019939-exon-sc0000339-1510915933:298533..298726TCONS_00019939-exon-sc0000339-1510915933:298533..298726Clytia hemisphaericaexon
TCONS_00019939-exon-sc0000339-1575043694:298533..298726TCONS_00019939-exon-sc0000339-1575043694:298533..298726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:295095..298726 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11711	3.29263	1.81162e-09	0	3.87808	0.65374	17.4597	22.7846	1.12953	2.45046	0.00604064	0.00379019	2.42068	7.70615	0	0	0	6.33683e-10	0	7.35475e-10	2.41912	3.31772	4.51469	9.42206	6.43508	0.899729	5.37571	4.98015	7.32628	2.98529
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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