TCONS_00019890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019890
Unique NameTCONS_00019890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019890 ID=TCONS_00019890|Name=TCONS_00019890|organism=Clytia hemisphaerica|type=transcript|length=1489bp
GTtcctttttcttgtttttctaaGTAAAGTCAGGAATTTGTAAAATCAAT
ATCCAACATTTAAAAATGACTCTTCAAAAAGCCAATTTAAAAAGCCAAGA
TGTTGCTGGAAAACGCATTTTAATGAGggTTGATTTCAATGTACCATTAA
AAGATGGAAAGATTTCTAACAACCAAAGAATTGTGGCTGCTTTACCCAGT
ATAAAACACTGTCTCGAGAAAGGTGCAAAATCGGTTCTTTTGATGAGTCA
TCTTGGACGACCTGATGGGCAAAGAAACGAAAAATTTACTCTTGCTCCTG
TTGCTGAAGAACTGAAAACACTTTTGGGAAGAGATGTAACATTTCTACAA
GATTGTGTTGGAGACAATGTTATCCAAGCGGTTCAAACAGCAACTGACGG
AAGTGTCATTTTATTGGAGAATTTGCGATTTCACATCGAGGAGGAAGGTA
AAGGTGTCAACGAAACTGGTTTGAAGGTGAAAGCCGAAGCTGACGCAGTG
AAAACGTTTCGAGAATCTCTCTCCAAACTGGGTGATGTTTATGTCAATGA
TGCATTTGGAACTGCCCATCGAGCACACAGttcaatgGTAGGCGTCTCAT
CGGAGACACGTGTTGCCGGCTTCCTGATGGAGAAAGAGttgaaatacttt
gaaaagGTGCTTGAGAAACCTGACCGACCATTCCTTGCCATCCTTGGTGG
agcGAAAGTAGCAGACAAAATCCAGTTGATCAATAACATTCTGGATAAAG
TTAACGAACTTATAATTGGAGGTGGAATGGCTTTCACATTCCTTAAAGTC
ATCAACAATATCGAGATTGGATCATCATTATATGACGAAGAAGGAGCAGC
GATCGTACCAAAGATCATGGAGACAGCCAAAGAGAAAGGAGTCACCATCC
ATCTGCCCACTGACTTCGTTTGTGCCTCCAAATTCTCTAATGATGCTGAA
ATCAAAATGGGAAACTTGAAAGACGGTGTCCCTGCCGGATATATGGGACT
TGACATTGGACCAGAATCAGTCGCTCAATTCAGCAAAGTCATTGATAATG
CAAAACTTGTCTTCTGGAATGGTCCTTCAGGAGTGTTCGAGATGTCGAAG
TTTGCGGAAGGAACGAAATCAATAATGGATAAAGTTTGTGAAGCAACTCA
ACGAGGCGTCACCACTGTCATCGgTGGTGGTGATACTGCCGCAGCAGTGA
TCCAGTTCGGAAAAGCTGATCAAGTTTCACACGTTAGTACTGGCGGTGGT
GCCAGCATCGAACTTTTAGAAGGTAAGGAACTACCCGGAGTAGCTTTCTT
GTCCAACGCTTGAACACTGAACACGATCCGATCGAAATTCTTTACCAATG
CTTCCTGTattatctttttgttttgtatttttttagataattatagtata
tttataaaatttcttaCTTATTCTATGCAgctttttagtgaatttttatt
aaattacgcatgaaaaaaacaacaacttgcCAATGGCAC
Run BLAST on NCBI

transcript from alignment at sc0000339:267661..277392+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019890 ID=TCONS_00019890|Name=TCONS_00019890|organism=Clytia hemisphaerica|type=transcript|length=9732bp|location=Sequence derived from alignment at sc0000339:267661..277392+ (Clytia hemisphaerica)
GTtcctttttcttgtttttctaaGTAAAGTCAGGGTAAGTCAAAGTACAT
TGTTAGTGTGAGGAAAAACTTAAAGACCCAGATAGAGAACAGAGGCATGG
AAAAGGTAAGTCTATTTCAGTTGTAGTCCAGAAGCTGGGAAGCTCAACTA
CTTTTGCCTTTAATATAATTCTGATACCCTGATGGGGGAAAAGTAGTGCT
TTCGTAgtgccatcattcaaatcagaaagcgaagatagtatacggaAGAT
TTTCTGACTAGTATCATACCAAGTCATACCacaGCACGACACAGCACAGG
ACTAAAGTCCTTTCAAGCTCCACAGGGTCCAATAGCTAGCTCCTGGCTTT
GCGTTAGTGTTTAGCAGTGATCTAGGCCAGTTTTTCAGGTGATCAGCAAG
TTTGATTGTTAAAGTGAAAGTGAAGTGATGTCTTTGTGTGATGCTGTTTG
ATGGAGCAGCCTGCTTCTCAATTTGATTTACTtctctttttattattata
gaGATATTTACAAGTTAGTCTCACATCTAAACTGAAAGGTTCATACTTCT
TTCGTTGCTGCTACATTGAgaagggcaaatggggcaatatccaaacttcg
tcactatgttccaatttgcatccttctaaacatttatcatgcaatttttg
cttCTCATGTTCGCTATGCTAGTCAACTCTGGGGACTGTGTGACAATACT
GTCACACATAGAATTCTTACTCTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGGGGGGGGGGGTTCACACCCCTCTTCACACTATGG
TTAGTCTCACAGTGGGCCTCTAATCGATCTAATTTAGACTCTTCTTGTGC
CGTATTTCAAGCTATGAGTTTTCCATGGCAGTGATGGCTtctttataaaa
gcaaaagacacaaatatatttttcaaatccgGCATGCGGGAGTACCGGAG
GCTCTTTAATTAGTTACGATAATCTtagattttaaaaatcattagaATTT
GCAACATATTATGTGGATCAGATGGTGACTTACAAGCAAGCATTTTCCAA
GAATTGTTTGACATATTCTAATGTTCTAATGAAGAAAATCCACCATCATC
GACTTCTaataaaaaagggttttccctTTATCTTACTTTATACTAATAAA
GCACCAAATTATCTGCACGTTTATCATCAATGTCTGGCGACGTCAGAACA
AAGTTGTTATAATTGCTTCGAAATCACATTATGTTTCTCTTGGGATTCGT
TTAAAGAAGATCTTTCTCGGCTGACGGTAAAGCTATTCTCGCAGCGACTT
TCTCGGTGAATTTATGGAGCAACTTTGAAGAGCTATTGAAGATTGAGGAA
TGCATATTTTTAGCCCAAATAACTTTTAACGTGACATTCAATGTCTCTTC
TTTTCATCACGTAAATAAAATTATGAGGTCGCCGCTTTAGATATCCAACA
AATCTCtttacaatagaccttttcgcctttccattcGCCATATttaattg
tatgcaaaaattatggtgaccgaattgctgtggtgaaattcccttagaaa
gtatgcaaaacatatgcaaaagaaaagtattaatataaaacttacatgca
taattggcattatattaaagtgtaatcttgtagaagaaagattaagtttg
cttcttttgaaaactagaaataatcaaattcgctcaAGTCTTAGAACAAG
tgcttcaaaaaaccataacattagacataaactcaagctgaaaaatcacc
cgcgaaggtacaaaaataatccttattcggctgacggtaatttattctcc
tgggaatagaaccgccaaacgatcaaatcaaaacattgatctaaacccgc
tgaatgtgtgacgtcataattactgctttcagtttgcgtgttttgaaagt
ttgttgtgtgtactccgtctttgtgaaattttttaatggcctgaaaacag
aatatgctatgtctttaagaaaaaatttctaaaaggcttttgttgttctg
tgaatatttctttttggattaagaaatttcatcttttattgttctaatga
ttataatttttctttataagatgatTTGTTggctttttaatctttgtgaa
aacttgcatatgtttcgtatattttccaactaaatccaaccacggctttt
tcattcgtgtatttttgcatacaattcaagatggcggatggaaaggcgaa
aaggtccaTGGAGATGGTAAAATATCGTGGTTtccttcaatttcttcttt
gtttttcctTCGGCGTTCCGTCGCTTGACATGTATCGTTGAGTGTACTTC
ATTTCTGAactgtgaaagaaaaaagtacgATAAAATGTTAAATCCTCGCG
AAGTAATCACTTGTTAAAGATTTCAGTCCGAAGTTTCCTTCGTTCCGAAG
TTTCCCCGACCTACGGTAGTGTCAAGACCTACAGGTGACCTATAGTCACT
AGTTGGGTATGGCCAGGCAGTTGCACTcaacgattcgtttaaaactcagc
ctcctaaatatttggggtaggttaagtatgtacaaagaaattcatacttt
tccaacccggcgaatctttaaaaaagaagcgaacaataaaatataattac
cctttccaattaaacctcttcggtggtgAGCGTAGtttactctgacgtaa
ttgtaaaatttatgtgatgggaatTTGACATATGCTTGTACTCTCTGTGT
ATTTACATTCgttgtaatgtaatgttgtttggggaattatgaagttctct
ggaatttcgattgcatttattcaggttgattttttatgacttctaatggt
actttttctaacgagtttgattactctgttctcacacttatgtatttttt
tttgcgtacttttccgtgattacttttatttatatttttaaagacaggta
agaaggcatattgatgtaactgccaagCCAGACGGTGTTAATCGAACGTT
gaatcaattgaatgcaattgaaTAATTGTAATTcaattgtcaaacgcaat
caaatattacccaggatttgccgttcgattgctttgattacgtttgattt
tattcgattacgtttgattgtattcgattacattcaattgattcaattgt
attagattttattcgctttggtacGGTACTTTTAAAGCGCTTGGCCGCCT
GCGCTAAAAAGCCCTaacggagtgatccaatttaatttaatcgcaatcaa
tgacaatcaatcgaaccaatcgaacatagtcaaccaCAGCAAATTGATGT
GTTTGCGTAGTCTTGGTGACCAAACTGACTTCTGTATATATACTCGAGAT
GAGGTCGGACAAAGGTTGAGTATAGTGTATGGAGGATCTCTGGAGTTACG
CTGGTTAAACCTCGCTTGATGACACAAAGCATAGAGTTGGTCTTGTTGAC
TTGCTTGGCTATATGTTCAGCTATTTCTTTGAATACATGCTCCAGCTGAT
TATCCGTAAGACAATACAGGTGAGCATGTTTGATGTTTGCGAATTTACCA
AGCGTAAATTCTGTCGGGTGGGATTTCAAGAGCCAATCTTCAGaccattt
tttgtaaatatcaCTTTGGATGATGAGAGAATCAGAGATAGAATTGACCT
CCTTGAAAATCTTTGTGTCATCTGCAAAAAGTAGTAGAGATGAAATAACA
TTGACAGGCAGATCATTTATATACAAGACAAAAAGTATGAATTTTCTTAA
TCAAACCATTGAACTCAATCAAACTTAATCATTgattttcatcttcttca
tttttcatcttcgtttaattccatttttaatcttttttctttttagataa
TATTCCAGTGCGACACCTTCtatactctcagctcccagtaacttactgCA
AAGATCAGATTACCTAATTTATGCTACTCATTcactgagttggcggtgac
cggggatcgaacccacatcCCTTAGATGGGGTAAGGCAAATGCACTCTGA
CTGAGGTACCCACCCACTAttaatacaattcaatatgagGGATGGAAAGG
AGAACATATTTATTAACACCAACAAATTCTACACTGGAGTTTTAAGAGCC
TTTTTTAGGTGTGATATCATATTGGATAATTAAAAAACTCAGGCGATAAC
TCCATGTTTCAATGGAGGCAAGGGAAACAGCAACAGTGACCAAAGTTTTC
CTCGCACCCATTGAAACGTGGAGTCATAGCTATttatgctggagttttta
attatctAACATGATATCTTGCCTAGCAAAAGGCCTATGATGACCATGGA
TAGGTATGAAGCAATAATCAGCTAGAGTCTCCCAATCAGGTGATATATTA
ACACTGTCATTTAACaattaaaaaaagggaaaaatttgGTGCAAAAGGGG
AGCTTAAAATCTTCATTACCACACCAGAAACCGCAAAATTATCGCAAAAT
TATCTTGGTAATGACTTGGTAGTGACTTTGGTAAGTTGATAATTAAgtga
acttagaaacactcttaaagttacaaagaaagcagtTTGATAGAAGTGAT
CTTAGagacactcttaaaagttacgaagaaatcAATTCGATAAAGAATAG
AGTAAGAGGCAGGGGTGTATAGAAGATTTGTTCACAAATCAAGTAAATGG
TTTTATTTATCTTTTCACACGGACATCATGACCgatacaaaagattttca
gtcggtcaaatggCTTTTTCAGTTGGAAATTGACTGATGACCaacgctta
tttgcagccctggaTATACTGCTGTGCTTACATGATCTGTTTACATGATG
TTAACACTTCATGATTCATAAAttaaaacacaaaaagaaaCTTGTTCATT
GATTTGGATgatattattataatattttatCCCTCATATTTCTAGAATTT
GTAAAATCAATATCCAACATTTAAAAATGACTCTTCAAAAAGCCAATTTA
AAAAGCCAAGATGTTGCTGGAAAACGCATTTTAATGAGGTTTGTATAATC
TATTATTTCAGGTTTGTACCTCCCTGAACTTAGGAAATATTTTTGCACTG
TATTATATAGAACTTCTGAAACACTAACCTTTGTTAGCATCTAAACTGTT
AAATTTTCAACCATCCTCACAGATCCTTAAAGAGCATTATTGGCAGCGAC
TGCAGTTTTCTCTCATTTATCACTTGTGAACGATAATGGGCTGGTTTATT
TGATGTGGTGGCTATGGTGCCTAAAGGTGGTCTGGAGAGTAGCCCATCCA
GACTCTTTTAAGGCAAACCAACAACTCAGAAACTTTGCCCCAGAAGTCGA
TTGATTTACTACCTTTAGGGAGGAACTAATTTTAacaggaactaattttc
gcggttgtAAAGAATGTGAAAAAATCAcatgggaattaattttcgtggTG
TTAtggatttctttctttctttttgctaAGGATTATTCaaagtttttgat
gaaaaatggccaAATTTATAATTTGTGGGTTCCGATTTTTGCaacaatat
tatctctttttattttattagggTTGATTTCAATGTACCATTAAAAGATG
GAAAGATTTCTAACAACCAAAGgtatataaatttttttgctttgcaataa
tttttttcaagaatttaatttttttcttcaataaatCCCAATGTTCTTTT
CATTTAGAATTGTGGCTGCTTTACCCAGTATAAAACACTGTCTCGAGAAA
GGTGCAAAATCGGTTCTTTTGATGAGTCATCTTGGACGACCTGATGGGCA
AAGAAACGAAAAATTTACTCTTGCTCCTGTTGCTGAAGAACTGAAAACAC
TTTTGGGAAGGTAAAGTAATTTTCCAAGATAATATTGATAGTTcaaaagc
agccggcgaggcgaccttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNgggggggatgaaatattaatgggggggttcagacccct
ctgcacactatgcaAATAGTGCgctaaaggtttcctagaaatcagaacac
atcatttggataaaaaattgaaaggtcataacGTTttgtctcctagaaga
taagaacacatatttctaaaaaatcccttcgccggctgcttctgataGTT
TACGCTGTTATCTTTCTAATGGCAAGAGAACTTTGCAAATACAATGTATT
GTTGATTGCTTATAATAGTATAGAATAACCAACGCTGTCTTAACTTTACT
TTCTCACAGAGATGTAACATTTCTACAAGATTGTGTTGGAGACAATGTTA
TCCAAGCGGTTCAAACAGCAACTGACGGTAGGAGAGTTAACTTCATAAAT
GAAAGATTTAATATCGCTCTAGTGACACCATTTTCATTTATCCTCACATT
TGAGCTACACGTAAACTAGtaaggttttttttcttttctttttttgtggc
TAGGAAGTGTCATTTTATTGGAGAATTTGCGATTTCACATCGAGGAGGAA
GGTAAAGGTGTCAACGAAACTGGTTTGAAGGTAAATCGTTATACATTAGG
TCTGATGAATTCTTAAGATACTTGAACTTTACTgtcttttataaaaattc
aagCTATACACCACACTGAGCTCAAACTTCAGTCTTTTCCCAACTATTCA
TAGACCTAATTAGTGGTTGGTATGATAAACTCGTCAATGGACGTAAAACT
CGAAATTCACCCAATTTCAACTTACAATGTGCCaaaattcagcaaaattc
aACCTCCAGTCTCCAGACTGCCCTTAAAAGTTTTAGCCACgttttagaga
aaaattcgtCCCATTGtcaaaaagaataaacaattgaCACAAGTTAACAT
AACACAGAGTATTCATCCAAGGAACAAATTGTGAAGCGAATTTATCTTTG
TAGGTGAAAGCCGAAGCTGACGCAGTGAAAACGTTTCGAGAATCTCTCTC
CAAACTGGGTGATGTTTATGTCAATGATGCATTTGGAACTGCCCATCGAG
CACACAGGTTTCCTTCACTCTTTCCCTCTGACAAAAGTGAACCTATTGAA
ATAACTGGAAGATTTTGCGTGAATTCGGCTTTATGAACAAGCCAAGAATC
AGGaacttgcgaaatttaatcttgcGAAAATAAAACAGATTATAGTATCt
atcgaatgttttctcttttttttttagttcaatgGTAGGCGTCTCATCGG
AGACACGTGTTGCCGGCTTCCTGATGGAGAAAGAGttgaaatactttgaa
aagGTGCTTGAGAAACCTGACCGACCATTCCTTGCCATCCTTGGTGGGTA
AGAAGAACTACTTTCGTTCGAAATGAGCGCTGAGTTGAAAGTTGTGCTGT
GTAGTGTAATGCCTTCCCTCTGACAACATTCAATtctctttacaatttat
agagcGAAAGTAGCAGACAAAATCCAGTTGATCAATAACATTCTGGATAA
AGTTAACGAACTTATAATTGGAGGTGGAATGGCTTTCACATTCCTTAAAG
TCATCAACAATATCGAGGTATATCTTTTTTCTTGATTAAATCGGTCAACT
GTTTTAATGAGAATACCTATGATTTGTAAATATTACACATACAACAACCA
TCATATTGAAAGGGGTTTTGAGATAAGTTTGTTTTCCATCCAAAGATTGG
ATCATCATTATATGACGAAGAAGGAGCAGCGATCGTACCAAAGATCATGG
AGACAGCCAAAGAGAAAGGAGTCACCATCCATCTGCCCACTGACTTCGTT
TGTGCCTCCAAATTCTCTAATGATGCTGAAATCAAAATGGGAAACTTGAA
AGACGGTGTCCCTGCCGGATATATGGTAAGAGCTTTTTCGCAGACCTAAA
GACTCTGTGAAAACATCGGCTATTTANTctccacgtgatgtcttttgacc
aatgaaatcgttagaatcttactgatgcgggatAACATTAGGTATTGTCG
TCGTAAGTACTCGGCTCGCTTCTACTAGCGTTTCTATCGCACCTTTTCAG
CTCCCTCTCGATGAATGTCCTCGTTCGTACTCAACCTCCTGTCTCTAGCT
TGATTATGACATTCTTGCATTGATTTGTAGGGACTTGACATTGGACCAGA
ATCAGTCGCTCAATTCAGCAAAGTCATTGATAATGCAAAACTTGTCTTCT
GGAATGGGTAGNATTCATTCCATTTAAAACAATAGCTAATAATAACTACC
GTACTACTGAGACATAGATattattagttacacggtcttcttgaggtggg
atacgggatatacagggtcagtaaaaccgtattggtggTGAGGCTTGCCG
AGTCCCAATACGGTTTTACTGATCCCTGTATAttccgtatcccacctcga
gacgaCCGTGCAACGGATTTATCCCGTTGAANGTGATTTcacttttcaaa
tgaaaataatgaTCCTGACCTGTTTACTTCTTGTCTCCCCTTTCCAGTCC
TTCAGGAGTGTTCGAGATGTCGAAGTTTGCGGAAGGAACGAAATCAATAA
TGGATAAAGTTTGTGAAGCAACTCAACGAGGCGTCACCACTGTCATCGGT
AAGAACTTCTATGTTTTTGATATGTCGCAAACATTGTTCTCACTCAAGGA
TCCCTTCAACTGTCTTCCTTCGCTTTGAAACGAataacaaacttcaaaaa
aaattcttttccaggTGGTGGTGATACTGCCGCAGCAGTGATCCAGTTCG
GAAAAGCTGATCAAGTTTCACACGTTAGTACTGGCGGTGGTGCCAGCATC
GAACTTTTAGAAGGTATGACGAAGCTCAATTCTTTCATTCTTCGtttcat
tcaatatttttttagataacCTCTTGTCTATTCAGTGATGGTTTAATTCC
ATGATTGCATGTTTATTCAAAACTTCCTGTGCTTACAATAATGATAATTG
CTTTTGATATTTCAGGTAAGGAACTACCCGGAGTAGCTTTCTTGTCCAAC
GCTTGAACACTGAACACGATCCGATCGAAATTCTTTACCAATGCTTCCTG
Tattatctttttgttttgtatttttttagataattatagtatatttataa
aatttcttaCTTATTCTATGCAgctttttagtgaatttttattaaattac
gcatgaaaaaaacaacaacttgcCAATGGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011191XLOC_011191Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019890-exon-sc0000339-1491911889:267661..267694TCONS_00019890-exon-sc0000339-1491911889:267661..267694Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1510915933:267661..267694TCONS_00019890-exon-sc0000339-1510915933:267661..267694Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1575043694:267661..267694TCONS_00019890-exon-sc0000339-1575043694:267661..267694Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1491911889:272656..272748TCONS_00019890-exon-sc0000339-1491911889:272656..272748Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1510915933:272656..272748TCONS_00019890-exon-sc0000339-1510915933:272656..272748Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1575043694:272656..272748TCONS_00019890-exon-sc0000339-1575043694:272656..272748Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1491911889:273282..273332TCONS_00019890-exon-sc0000339-1491911889:273282..273332Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1510915933:273282..273332TCONS_00019890-exon-sc0000339-1510915933:273282..273332Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1575043694:273282..273332TCONS_00019890-exon-sc0000339-1575043694:273282..273332Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1491911889:273418..273570TCONS_00019890-exon-sc0000339-1491911889:273418..273570Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1510915933:273418..273570TCONS_00019890-exon-sc0000339-1510915933:273418..273570Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1575043694:273418..273570TCONS_00019890-exon-sc0000339-1575043694:273418..273570Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1491911889:274520..274587TCONS_00019890-exon-sc0000339-1491911889:274520..274587Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1510915933:274520..274587TCONS_00019890-exon-sc0000339-1510915933:274520..274587Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1575043694:274520..274587TCONS_00019890-exon-sc0000339-1575043694:274520..274587Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1491911889:274714..274790TCONS_00019890-exon-sc0000339-1491911889:274714..274790Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1510915933:274714..274790TCONS_00019890-exon-sc0000339-1510915933:274714..274790Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1575043694:274714..274790TCONS_00019890-exon-sc0000339-1575043694:274714..274790Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1491911889:275164..275267TCONS_00019890-exon-sc0000339-1491911889:275164..275267Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1510915933:275164..275267TCONS_00019890-exon-sc0000339-1510915933:275164..275267Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1575043694:275164..275267TCONS_00019890-exon-sc0000339-1575043694:275164..275267Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1491911889:275438..275557TCONS_00019890-exon-sc0000339-1491911889:275438..275557Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1510915933:275438..275557TCONS_00019890-exon-sc0000339-1510915933:275438..275557Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1575043694:275438..275557TCONS_00019890-exon-sc0000339-1575043694:275438..275557Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1491911889:275663..275777TCONS_00019890-exon-sc0000339-1491911889:275663..275777Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1510915933:275663..275777TCONS_00019890-exon-sc0000339-1510915933:275663..275777Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1575043694:275663..275777TCONS_00019890-exon-sc0000339-1575043694:275663..275777Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1491911889:275906..276085TCONS_00019890-exon-sc0000339-1491911889:275906..276085Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1510915933:275906..276085TCONS_00019890-exon-sc0000339-1510915933:275906..276085Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1575043694:275906..276085TCONS_00019890-exon-sc0000339-1575043694:275906..276085Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1491911889:276341..276417TCONS_00019890-exon-sc0000339-1491911889:276341..276417Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1510915933:276341..276417TCONS_00019890-exon-sc0000339-1510915933:276341..276417Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1575043694:276341..276417TCONS_00019890-exon-sc0000339-1575043694:276341..276417Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1491911889:276708..276808TCONS_00019890-exon-sc0000339-1491911889:276708..276808Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1510915933:276708..276808TCONS_00019890-exon-sc0000339-1510915933:276708..276808Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1575043694:276708..276808TCONS_00019890-exon-sc0000339-1575043694:276708..276808Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1491911889:276925..277023TCONS_00019890-exon-sc0000339-1491911889:276925..277023Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1510915933:276925..277023TCONS_00019890-exon-sc0000339-1510915933:276925..277023Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1575043694:276925..277023TCONS_00019890-exon-sc0000339-1575043694:276925..277023Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1491911889:277176..277392TCONS_00019890-exon-sc0000339-1491911889:277176..277392Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1510915933:277176..277392TCONS_00019890-exon-sc0000339-1510915933:277176..277392Clytia hemisphaericaexon
TCONS_00019890-exon-sc0000339-1575043694:277176..277392TCONS_00019890-exon-sc0000339-1575043694:277176..277392Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:267661..277392 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.79949e-08	6.54156e-09	0	1.84836e-08	68.5774	50.0837	44.5926	51.1747	7.47285	3.46884	9.86587e-08	2.72036e-09	3.74041	3.51827	0.61699	0.314187	0.201732	1.81851	0	6.2446	1.4735e-09	0	0	2.08124e-07	15.0551	11.2808	0	9.78972e-10	8.56667e-10	3.64421e-09
Blast
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BLAST of TCONS_00019890 vs. Swiss-Prot (Human)
Match: PGK1 (Phosphoglycerate kinase 1 OS=Homo sapiens GN=PGK1 PE=1 SV=3)

HSP 1 Score: 544.658 bits (1402), Expect = 0.000e+0
Identity = 267/412 (64.81%), Postives = 321/412 (77.91%), Query Frame = 3 
Query:   75 QKANLKSQDVAGKRILMRVDFNVPLKDGKISNNQRIVAALPSIKHCLEKGAKSVLLMSHLGRPDG-QRNEKFTLAPVAEELKTLLGRDVTFLQDCVGDNVIQAVQTATDGSVILLENLRFHIEEEGKGVNETGLKVKAEADAVKTFRESLSKLGDVYVNDAFGTAHRAHSSMVGVSSETRVAGFLMEKELKYFEKVLEKPDRPFLAILGGAKVADKIQLINNILDKVNELIIGGGMAFTFLKVINNIEIGSSLYDEEGAAIVPKIMETAKEKGVTIHLPTDFVCASKFSNDAEIKMGNLKDGVPAGYMGLDIGPESVAQFSKVIDNAKLVFWNGPSGVFEMSKFAEGTKSIMDKVCEATQRGVTTVIGGGDTAAAVIQFGKADQVSHVSTGGGASIELLEGKELPGVAFLSN 1307
             K  L   DV GKR++MRVDFNVP+K+ +I+NNQRI AA+PSIK CL+ GAKSV+LMSHLGRPDG    +K++L PVA ELK+LLG+DV FL+DCVG  V +A      GSVILLENLRFH+EEEGKG + +G KVKAE   ++ FR SLSKLGDVYVNDAFGTAHRAHSSMVGV+   +  GFLM+KEL YF K LE P+RPFLAILGGAKVADKIQLINN+LDKVNE+IIGGGMAFTFLKV+NN+EIG+SL+DEEGA IV  +M  A++ GV I LP DFV A KF  +A+     +  G+PAG+MGLD GPES  ++++ +  AK + WNGP GVFE   FA GTK++MD+V +AT RG  T+IGGGDTA    ++   D+VSHVSTGGGAS+ELLEGK LPGV  LSN
Sbjct:    5 NKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSN 416
The following BLAST results are available for this feature:
BLAST of TCONS_00019890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PGK10.000e+064.81Phosphoglycerate kinase 1 OS=Homo sapiens GN=PGK1 ... [more]
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