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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019889 ID=TCONS_00019889|Name=TCONS_00019889|organism=Clytia hemisphaerica|type=transcript|length=2680bp
CTAATGGGTGAATTGAGACCACGCAAAAATTGGTCTTTCGCATGATCAGG
TCAGGTGTAGCAGATCTAAGTTGACCAACGTAATCTTGTATAGTTTCATT
GGAGATCTGTGGAGATTTGTACAATAGACAAAAGTGTCATTCGATGTACG
CTTGGATTTGCTTGCTTTGTTACAATTGACTCTATCTCCTGGAGTAGTTT
GTCCTCGTCAACGTAGAAGATGTCAGGGATGATCAACAAGACTTTTTTTT
GGACCGTCCCTTTACAGCAATTGTACAGTTGTGCAAGGATTTGCTTACCA
ACAAGTGCGGTAATCTGCTTACCAATTAGTGCGGTAATCTGCTTGAAGAC
TGATCAGTCAatcaggaattttcgaaattgGGGTTTTGTCATAACACTAT
TCACTACCGGAATCTTAGCAGATGGGGCCTTGATGGTTGCCACGATTTGC
CACAAGGTTGAGGTGTTTTGGATCAGATTTACAGTGGTGCAATTGTTATT
CCAATTTCTCATAAGAAGACAAAATGGAAGGCGATAAATTACCTGATAGT
TTTGATGTAGTGATCATTGGAACAGGGTTAGGTGAGGCTATTGTAGCTGC
GTCTTTATCAAGGATTGGAAAAAGTGTACTTCATATCGACCGAAATGATT
ATTATGGTTCCCATTGGGCTACCTTCAACTTTGATTCCATTTTGAAATGG
GCAGACTGTTATCAGAAATGCAACGAAGAAGAAATATCAGATGAAAATGA
TAAAGTCCCTTCTCACGACTCTGCTATTTCAAACATTGAAATCAGGTCTT
TTATTCCTGAAACATCTCAAGTAAATGATATAGCTAAAAGCGAGGAGACT
TCTTCTGAGAAAGACTCAAGTGCTGCTTCAGATTCTGAGAAAGAAGATGT
TCCTTCAAACGATAAAAACACACCAGCAGAGGCTAACTGTGAAAATGAAA
GCACAGAACAACCAAGTATAAATCAAGAAGCGGTTACTGATAACAGTGAA
GGAGTTGAACCACAAGAGGATGAACAACAGAAATCTGAAGAAAAACCTAA
GCCAAGTTTCTTCAATCCACCAAAACAATCTACCATTGTTAGCCAGgcta
aaatcaaacaaaaatctcCTGACATTTCATTAGAAGATTTCAATGCTTTA
TCCAGAAGATTCAATTTAGATGTGAAtccaaagtttcttttttctgCTGG
TCCGCTAGTCAATGCTATCATTAAAGCCAACATTTCCCATTATTCAGAAT
TCCAAGTTGTAAACCGAATTTTGACATGCAAGAACGACAGTATCATTGAA
GTACCTTGTAATCGAAGTGATATTTTCAGTAGTTCCTTTCTATCAATGAT
AGAGAAAAGAACCCTTATGAAATTTCTTACACTTTGTCTTGAGTTTGATG
CAGATTCACCGAGCGAAGATGTGAAAGAGTACCAGGAGAAATCTTTTGTG
GAATTTCTTCAATCTAGAAGGTTGAGTGAAAACCTTCAAAAGTTCATCAT
CTTTTCAATAGCAATGGTCAAGCCAAACACCTCGACACTCGAAGGTCTCA
AAGAAACTTGTTCATTCCTAAAATCACTTGGTCGCTATGGCAAATCCCCC
TTTATTTGGCCTCTGTATGGTGTGGGCGAACTACCACAGGCTTTCTGCCG
AATGAGTGCTGTCTTTGGCGCACTTTATTGCTTGGGGAAATCACCTGTTG
AACTCAAAATCGAGGAGAACAAATGTACACATGTAGTGCTGGAGAATCAA
ACCATTAAGTGTGCTCATGTTGTTATGAACCGTAGCTTTTTACCTCAATC
TTATCTGAATCCATCAGTTAGCAGGAACAAAGTTTCAAAAGCCATTCTCA
TAACGAACGGATCAATATTGCCATCAGAGACTGAGTTTATATCCTTCCTA
ACTATACCTCCATTAGCTGGTAAAGAAGAACTAGTACGTGTTATAGAGTT
AGGACCCTCTGCTGCTGCTTGCCCCGCTGGTCTTTATGTTTTGTATTTGA
CATGTAAGTCCACTGGTAAAGCTTTGCAAGATTTGAAAGATTATGTTCAC
TTATTGACAGAAACACAAAGTGATGATAAACCAAAGTTATTATGGTCCAT
TTATTTCAATGAGCTAGCGGATAATAATGATGTGGTTGACTTACCAGAAA
ACCTTTCAGTGACAACAATGCCAGGGTCTTCTTTAGGTTTCAAAGACGTT
GTTGAGAATGCAGAGATGATTTCGAAGAGGATTTTCCCTGATGGTGAATT
CTTGATGACAGTGCCCAATGCGGAAGACATCGTTTGGGACACAGATAAAA
CCCAAGAGGAGAAGAATGAGGAGGGGAATGAAAACAACGGAACAACGGAA
GAAGAAAAGCAAAATGAACAAGATCTCGAGCTTTCCCAAGTTGAACAGGG
GAAAAAGGAAGTAGAAAAAGATGGCGACAAAACAACGTAATGTCATTCCA
TAAGGAAAagcttctttttatatatatgatttattcgaatttttgtattt
taaattaaacttttgaatataatagaatattttttcgttttatttgGATA
AGCATACAAATAGCTTTTACTTTAACTTTAGCGCTTTAGAGAATCTCTTA
TTGAATGAATATCTTCCACTAGTGAAATGTTTAGCACTCAACTCGTCGTG
AACGATTTACCTCTTCTCTCTATAAACAAG Run BLAST on NCBI transcript from alignment at sc0000339:243852..255763+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019889 ID=TCONS_00019889|Name=TCONS_00019889|organism=Clytia hemisphaerica|type=transcript|length=11912bp|location=Sequence derived from alignment at sc0000339:243852..255763+ (Clytia hemisphaerica)
CTAATGGGTGAATTGAGACCACGCAAAAATTGGTCTTTCGCATGATCAGG
TCAGGTGTAGCAGATCTAAGTTGACCAACGTAATCTTGTATAGTTTCATT
GGAGATCTGTGGAGATTTGTACAATAGACAAAAGTGTCATTCGATGTACG
CTTGGATTTGCTTGCTTTGTTACAATTGACTCTATCTCCTGGAGTAGTTT
GTCCTCGTCAACGTAGAAGATGTCAGGGATGATCAACAAGACTTTTTTTT
GGACCGTCCCTTTACAGCAATTGTACAGTTGTGCAAGGATTTGCTTACCA
ACAAGTGCGGTAATCTGCTTACCAATTAGTGCGGTAATCTGCTTGAAGAC
TGATCAGTCAatcaggaattttcgaaattgGGGTTTTGTCATAACACTAT
TCACTACCGGAATCTTAGCAGATGGGGCCTTGATGGTTGCCACGATTTGC
CACAAGGTTGAGGTGTTTTGGATCAGATTTACAGTGGTGCAATTGTTATT
CCAATTTCTCATAAGGTCTCTTTCGTTAAATCCTTTAATCATTATCATTG
TCTCTGATATGCGTGCGTCTGTGAAAAGTTTGGCATAGTATAGTAGGTTT
TGCTTCCTTTTTTGGGATTTCTGCCTCATTGTCATTAAAGAATTGCTCGC
AGGTTTGTTCTGCCTGCAGTGCCATATTGAAATTGAGTTGACATAAGAAT
AAATTGTACGTTATAAAGCCAATCAGGGCCAGCCAATATATTGTTGTGTT
TATTATGCTAGAAGCAGCCCTCGAAtttcaggtcggcattcggcagTGCC
GACCTAAAAGCCGACCAAAGAGTGCGTATGGTCGGCAGTTCATTGCCGAC
CATATTCATTGATTCTCTCGGCAGCCGACCATAAGTTATCTTTTAGGTCA
GAAAAGCCGACCTGTAACTGTAAAATGAAAGTCTCTAATAAGAACCATAT
Cgcactcaaataaaaaaacaaacattgccgtagcctttaaacaactttgc
cgacctaaaTTATAGCTCAGATCGGCATTGCCGACCTAAAAACAAGctta
ggtcggcaaaattttgccgaccttCGGCCGGATTTGGACGGCACTTACGT
GCCGACTTACTTTTACTTGAATTTCGAGGGCtgtataagaacaaaaaatg
aAGTAACTAAATGATACGGACTTTATGCTGGATAGATAAATATTGGGGTG
AACCTGAAGTATGTGAACTATTGAAATGACAATCACGTGCCTGATAAAAA
TTTTGGAAGTGAAGGAAGAGGGTAGGATTGAATATCATTGAACTAATTGA
ACTCTTTGCCGACAGAACTAAATTGAACTCATACTGCTTTGAAAATTGTG
AGTGCTCAATTAgtgtttgattattttttaaatcaaacttaAATCCTTCA
ATGGCATTCAATTGGTTTGATAGTTGTTCGGGAGAACCTGACAGTCTTTT
GACTAACTAAgtactccagcataaatttTGTTCATGATATCATCATTTAA
TTGATTTATCTTTTACAGCATAGCTGTAACCTagggacaagataatttat
cccaCTTGTGCTGGCTGTGGGAAAGTATGTGTGCTGGAGTAATTTGTTTC
TCAATAGACCGTCGGGTTCTCCTAaacaattattattatttttcgatCCG
TATGACAAGTTGGATTGATCAGGTCTGGAATAAAGGGacataaattttca
aacttcaaattttttttctatcagCAGGCCTCCATTTTTACAATAGGGGG
CATTTAAAAAAGAGTATGGTATGCTCATCTTGGCTTAGTAAGAATTCAAC
AATTACGTCAAACAAACCCTGAATTAGCAGATTAGGAAATTTATATTGTA
AAAAGTGCATGTGAAATACATttatctttttggacctacctccgggtgcc
ccggtggaggtcctataaattaacccatgtccgttcgttcgttcgttcgt
tcgttcgtctgtccgtctgttaccagctNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttttccattctgaattgttg
tacaattattgtcacttttttcttattttcatctgatgttaatcattagg
taggtccattcagcatgttgcttgttttttttaaattaaatatgTGTTTG
AACTACCTTAATGCCCTTAATATTCGCGCACCTTTTATTTTCGAGCCCTT
TAATTTTCATGCCTTTAATTTTTGCGCACCCCTTAAAAACAACCTTTCGC
GCACCCTTTAATTTTCGCACACccctattattatcaattttcgCGCATCC
TAAAATTAGTTTCTCTTTacatattttacatatttttttctggctgtttt
ctagtcaaatcctcataaaaaagtctccaaaaggcggacactctaATTAG
CAGACACTAATCTGTTTCCCcaatggtgtccgctaattagaggctcCACT
GTACTATGAATaacatatttttataaaaaatcatgATTAATTACGAGACA
CAAGTTATATTGCTTcttttatgactttcttgagtatcttgtttaaaagt
atatcataaatacaaaaggatctaaattgattttcttttgaaaaagccAT
AACTGACTAAAAATTCCTTATTtgctaatagacgatatcggcttaacatg
aaaactcagatttgatccccgagaattacccacaatgctttgcgcggaaa
atatttcactgcaaacttttttccgtgcaaagcattgtggggaattctcg
gggatcaaatctgagttttcatgttaagccgatatcgtctattcgtGCAC
CTTTTAATTTTTGCGTGGCTTAGTGCGCGAAAATAGGCCTTTATCCCGCA
CTCTTTAATTTCCGCGCAGTGGTAGTGCGCAAGAATTAAGGGCATTAAGG
TATATATAAAGTGTGTTCATGAACATTTGGGAACATCAAAAGACTGttcc
attttattttgtattcCCAATCACTTGTAGTGACACATGATTTCTAGCCA
TTCAGAGATCTCATATTTGACATGGTTGGATTTTCTTGTTCAAAATTGTG
TATATTTTTGGACTAAGAATCAGAAATATTATTTTACTTTACCAACCATT
CAAGCTATATTTTCATGCTCTCTGAAAAGCagactttgaaaattcaaatt
gcGATAAAAAGAGAACAGGTTGGGTTAGGCCCTGAAATGTTCACTGATTT
CTCATATCACTGATAGAAACAAAATATGTGTCCCTGCAAGCAATTTGGAG
CACATTGAAAATGGGCCGATCCTAAAAAAGCCGAACTTTTGGCCGATATG
GACCGGTCTGGACCGTTCCTGGCCGAATTTGGCCGATCTTGGCCAATCTA
GGCCGATCTTAGCTGAGccatgtttctaaatcttttctctaAACAAAGGC
CGATCTAGACCGGTCCAAATCGGCCAAATTCGGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCtaaaaact
ttcgaatctttttgtaaagtgTTCGAATGAACTCCAGAGAacgtttgaat
gttttgaaaattgttcgatcaaattattaaaaaagttttccaattgtttt
gaaaagtctctgactctaaaatcaaaacaaaagcaaaagtaAAAGAACCA
CAACAGAAGCAAGAAGAAggaagtattttcatttttttgttttcatttca
cTAAAACCATCACGAGAGAATAATTTTTCATGAGCTAATAGATTACTGGT
ATTATTGGAATATCAGCAAAGGAAAGGCAAGTAACAGTTTCCTTTTCAGA
GATTGTGCTGTTGTTAGTTAAAAGAAACAATTGGTATTCCTTTTGGTTTT
GGTATTACTTTACTAGCTGTGTATGAGAtacgaagaaaaatattgatatg
CAAGTTTTATCAGGGGAGATATGTAAATGATACAGGGATGTCTAAATAAA
CTAACAAAGGGACGCAGTGCAATTCTATTCTAAGGAGGATTTCTAACAAT
CTTTTCTAAATGGATTCATAAGAGCGAGTGAGTCAAGGTTATGATATACA
AGGGAGATGTGATTTACGACGAAAATGCTGTTTGAactgtttgaaaacaa
ttttgcttaTAATTAGTATTTCGGCTTCCATAAAACATTCTGGACCGGTT
TGTATCGGCCTGGACCGGTCCATATCGGCCTAGACCGGTCTTACATTGGC
CGAAcatcattatttttgttttatcaggTTTGTAACTTGCCAAAACCAGA
CCTGGCCGTTATAGGCCGATCCAGACCGGACTTGGCCGATCCGAACCGGA
CCAGGCCGATTTGGGCCGTAGAATTACTTGGCCGATCCTGGCCGATCTTT
AAtgtgctctaaatcgcttgcagGGACACATATATAAACATCAGCAAATT
CTGAGAAATTCACCTGATCTTAGTCTGATTGTTACAGACAGTGGCTCTTG
ATTGAACTCACTTTGGGTAGTTCTTACActctttttattataagcatatg
GCATATGGGAAAATCAGGTCGAGGCTTAAtaatatgcttagcaaaatgtc
atttttcaggCTTATTAATTTatgcttttttgattttctttaggttcatg
aaaatttgaaacttttaagTTGGAACATTGATTCAGCTCAAAGTatgcaa
gtttttttttgtaatttgatgCTGCAGGCAAAAGTCTtacgtaaaatttt
gaaaattttactcatcttcagcaaaaatttcaaggaaaaataATTATGGA
AATTGCAAGCCcagcaattatgttaaagaacagccttttatctttcagaa
tcttcaaacagaatcgaaATATCTCTATTAGCTCGACTGTAATAGACTTT
TTTGTAAACCAAATATTtaggcttttttccgacaggtggaaattttgtga
tgacgtcatcagtttttgaatgacgtcatcaaatttttttttcatccttg
gaaattgtatcatgatcatgatggagaacatctgtactaaatttcatggc
catagctcttctagatcgaaaataatcaagggttgtagattctacccccc
cccccccccccggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccccctctgggggt
acaaaagtcaaaaaagcttggggctaatagggttaaatgtaaccctaaaa
aggtcagcgttttagaaaagctgcacaaatttttttgcatttcagcttgg
aTGTATCCTTAGCATTATTATGACAattatgtatattttttaccgaattt
gagcctaagtatacttatataagcgttatgcttataaaaagaagagTGTA
TCTGACGGTTTTTAATTTGTAGCACCAGAACTTACAAGTGACTTCTATTA
ACTGTTATTattatgaatttattttgtgaAGAAGGTGTTCCCTTCCCTGT
CATCATCTGCCCCAAGTTGATattttcccaaaatattttcagcctGGTCA
ACTTTGTGTGCTTTCAGTTAACTTCATACAAATTTCCATACCATACAGTC
AATtattatataaataaaaattggaTCTTTTGCGTTGACATTTGCTATGA
TTACACAACGTGAAAATACCCAATGTAAGGTTAATTTATCTCCACAGTaa
ttaacttttaaaaaatagaCTTTTCTCAagtaaaaacatttgaaaaatag
gTAGAATAAAGCTCTATTTTTAGCTTAGGTTGCCCTTTAGGGGGCTTTTG
GTCAACTTGATTCCACCCTTAATATCTCATACAAACTGACTGTGCCAGAC
ATTTGCTCGtttaatatggaaatatttcactcttTCTGGCTGGATTTTTC
GGAGcagaaaaatctcggaacttgtaaaatatttctcatattgtactagc
aactgtccgataactattaatttttgttattgAACTATTCAAAACTTACA
AAAATAGTATTGCCAACCTGGGTTTCAGCATGGCATAAAATGAAGTAAAG
CAAGTCTTGACAAGACATCAATCATTCTGTCAGTCATTCTGTATACTTTC
ATCGTTTAAAGTCTTTGAGATCAAATCTAGAATCACATTCAAATTCCAAA
TAGCTTATAGCTAGACTCAACAATTCTTGATTGTACATCTGATTTTGCTT
TGACAAGTAGAAAAGAAAGACAATTTACACCATCTGATTCGACCTATGTC
TTTCTGAAGATCCAAATAATCTTTGAATAGAAATCGaagccaaaattttt
gaagcttttggtagaatgtcttcttttggcaattttttttgactgttcAG
AAATGAACAGTCATTACTATTGCGTAGTTTTCATTATATATTGTTGCGGA
CAAATGTTCTTTTAAGTAAAATCCTCAATTATCTAAACTGGGcttagaaa
aattgaataaaatcaaaactcACTCAATCAATTGATTTTCATTTCTCAAG
ATTATTGAATAGATTTTGGATATCGAAATATTATGTATAGTtataaaatt
tcacaaaaatcatggggattttactttatataaaaattagTTTCCACTTT
TTTGTGACATACTGTACATAATTGAGGGTTGATATAAAtccaaaaaccaa
caaaaatcTGTTGAGTATCATGTTTTATCCTACACCCAGAAGCATGTTAA
AATGACTCTCTCTGATAAGAACagtaaaaatatcaagaaaattgTCTTTT
GAGAAACAAGGTTTATGAGacattattcaatggctgtttttgcctacagg
tatagaATAATAACAATATTATTATATGGCTTTAATTGTGGCCAATTATT
GTAGAAAATTCTTAATTGACCAAATAATGGTTTTAATTTGTCTCGTTTTA
GAAGATAAAATGGAAGGCGATAAATTACCTGATAGTTTTGATGTAGTGAT
CATTGGAACAGGGTTAGGTGAGGCTATTGTAGCTGCGTCTTTATCAAGNC
CAACCTGGGTTTCAGCATGGCATAAAATGAAGTAAAGCAAGTCTTGACAA
GACATCAATCATTCTGTCAGTCATTCTGTATACTTTCATCGTTTAAAGTC
TTTGAGATCAAATCTAGAATCACATTCAAATTCCAAATAGCTTATAGCTA
GACTCAACAATTCTTGATTGTACATCTGATTTTGCTTTGACAAGTAGAAA
AGAAAGACAATTTACACCATCTGATTCGACCTATGTCTTTCTGAAGATCC
AAATAATCTTTGAATAGAAATCGaagccaaaatttttgaagcttttggta
gaatgtcttcttttggcaattttttttgactgttcAGAAATGAACAGTCA
TTACTATTGCGTAGTTTTCATTATATATTGTTGCAGACAAATGTTCTTTT
AAGTAAAATCCTCAATTATCTAAACTGGGcttagaaaaattgaataaaat
caaaactcACTCAATCAATTGATTTTCATTTCTCAAGATTATTGAATAGA
TTTTGGATATCGAAATATTATGTATAGTtataaaatttcacaaaaatcat
ggggattttactttatataaaaattagTTTCCACTTTTTTGTGACATACT
GTACATAATTGAGGGTTGATATAAAtccaaaaaccaacaaaaatcTGTTG
AGTATCATGTTTTATCCTACACCCAGAAGCATGTTAAAATGACTCTCTCT
GATAAGAACagtaaaaatatcaagaaaattgtttttgcctacaggtatag
aATAATAACAATATTATTACATGGCTTTAATTGTGGCCAATTATTGTAGA
AAAATTCTTAATTGACCAAATAATGGTTTTAATTTGTCTCGTTTTAGAAG
ACAAAATGGAAGGCGATAAATTACCTGATAGTTTTGATGTAGTGATCATT
GGAACAGGGTTAGGTGAGGCTATTGTAGCTGCGTCTTTATCAAGGATTGG
AAAAAGTGTACTTCATATCGACCGAAATGATTATTATGGTTCCCATTGGG
CTACCTTCAACTTTGATTCCATTTTGAAATGGGCAGACTGTTATCAGAAA
TGCAACGAAGAAGAAATATCAGATGAAAATGATAAAGTCCCTTCTCACGA
CTCTGCTATTTCAAACATTGAAATCAGGTCTTTTATTCCTGAAACATCTC
AAGTAAATGATATAGCTAAAAGCGAGGAGACTTCTTCTGAGAAAGACTCA
AGTGCTGCTTCAGATTCTGAGAAAGAAGATGTTCCTTCAAACGATAAAAA
CACACCAGCAGAGGCTAACTGTGAAAATGAAAGCACAGAACAACCAAGTA
TAAATCAAGAAGCGGTTACTGATAACAGTGAAGGAGTTGAACCACAAGAG
GATGAACAACAGAAATCTGAAGAAAAACCTAAGCCAAGTTTCTTCAATCC
ACCAAAACAATCTACCATTGTTAGCCAGgctaaaatcaaacaaaaatctc
CTGACATTTCATTAGAAGATTTCAATGCTTTATCCAGAAGATTCAATTTA
GATGTGAAtccaaagtttcttttttctgCTGGTCCGCTAGTCAATGCTAT
CATTAAAGCCAACATTTCCCATTATTCAGAATTCCAAGTTGTAAACCGAA
TTTTGACATGCAAGAACGACAGTATCATTGAAGTACCTTGTAATCGAAGT
GATATTTTCAGTAGTTCCTTTCTATCAATGATAGAGAAAAGAACCCTTAT
GAAATTTCTTACACTTTGTCTTGAGTTTGATGCAGATTCACCGAGCGAAG
ATGTGAAAGAGTACCAGGAGAAATCTTTTGTGGAATTTCTTCAATCTAGA
AGGTTGAGTGAAAACCTTCAAAAGTTCATCATCTTTTCAATAGCAATGGT
CAAGCCAAACACCTCGACACTCGAAGGTCTCAAAGAAACTTGTTCATTCC
TAAAATCACTTGGTCGCTATGGCAAATCCCCCTTTATTTGGCCTCTGTAT
GGTGTGGGCGAACTACCACAGGCTTTCTGCCGAATGAGTGCTGTCTTTGG
CGCACTTTATTGCTTGGGGAAATCACCTGTTGAACTCAAAATCGAGGAGA
ACAAATGTACACATGTAGTGCTGGAGAATCAAACCATTAAGTGTGCTCAT
GTTGTTATGAACCGTAGCTTTTTACCTCAATCTTATCTGAATCCATCAGT
TAGCAGGAACAAAGTTTCAAAAGCCATTCTCATAACGAACGGATCAATAT
TGCCATCAGAGACTGAGTTTATATCCTTCCTAACTATACCTCCATTAGCT
GGTAAAGAAGAACTAGTACGTGTTATAGAGTTAGGACCCTCTGCTGCTGC
TTGCCCCGCTGGTCTTTATGTTTTGTATTTGACATGTAAGTCCACTGGTA
AAGCTTTGCAAGATTTGAAAGATTATGTTCACTTATTGACAGAAACACAA
AGTGATGATAAACCAAAGTTATTATGGTCCATTTATTTCAATGAGCTAGC
GGATAATAATGATGTGGTTGACTTACCAGAAAACCTTTCAGTGACAACAA
TGCCAGGGTCTTCTTTAGGTTTCAAAGACGTTGTTGAGAATGCAGAGATG
ATTTCGAAGAGGATTTTCCCTGATGGTGAATTCTTGATGACAGTGCCCAA
TGCGGAAGACATCGTTTGGGACACAGATAAAACCCAAGAGGAGAAGAATG
AGGAGGGGAATGAAAACAACGGAACAACGGAAGAAGAAAAGCAAAATGAA
CAAGATCTCGAGCTTTCCCAAGTTGAACAGGGGAAAAAGGAAGTAGAAAA
AGATGGCGACAAAACAACGTAATGTCATTCCATAAGGAAAagcttctttt
tatatatatgatttattcgaatttttgtattttaaattaaacttttgaat
ataatagaatattttttcgttttatttgGATAAGCATACAAATAGCTTTT
ACTTTAACTTTAGCGCTTTAGAGAATCTCTTATTGAATGAATATCTTCCA
CTAGTGAAATGTTTAGCACTCAACTCGTCGTGAACGATTTACCTCTTCTC
TCTATAAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019889-exon-sc0000339-1491911889:243852..244366 | TCONS_00019889-exon-sc0000339-1491911889:243852..244366 | Clytia hemisphaerica | exon |
| TCONS_00019889-exon-sc0000339-1510915933:243852..244366 | TCONS_00019889-exon-sc0000339-1510915933:243852..244366 | Clytia hemisphaerica | exon |
| TCONS_00019889-exon-sc0000339-1575043694:243852..244366 | TCONS_00019889-exon-sc0000339-1575043694:243852..244366 | Clytia hemisphaerica | exon |
| TCONS_00019889-exon-sc0000339-1491911889:253599..255763 | TCONS_00019889-exon-sc0000339-1491911889:253599..255763 | Clytia hemisphaerica | exon |
| TCONS_00019889-exon-sc0000339-1510915933:253599..255763 | TCONS_00019889-exon-sc0000339-1510915933:253599..255763 | Clytia hemisphaerica | exon |
| TCONS_00019889-exon-sc0000339-1575043694:253599..255763 | TCONS_00019889-exon-sc0000339-1575043694:253599..255763 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000339 | supercontig | sc0000339:243852..255763 + |
Blast
BLAST of TCONS_00019889 vs. Swiss-Prot (Human)
Match: RAE1 (Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3) HSP 1 Score: 363.229 bits (931), Expect = 1.216e-112 Identity = 221/626 (35.30%), Postives = 358/626 (57.19%), Query Frame = 2
Query: 530 GDKLPDSFDVVIIGTGLGEAIVAASLSRIGKSVLHIDRNDYYGSHWATFNFDSILKWADCYQKCNEEEISD---------ENDK---VPSHDSAISNIEIRSFIPETSQVNDIXXXXXXXXXXXXXXXXXXXXXX----VPSNDKNTPAEANCENESTEQPSINQEAVTDNSEGVEPQEDEQQKSEEK---PKPSFFNPPKQSTIVSQAKIKQKSPDISLEDFNALSRRFNLDVNPKFLFSAGPLVNAIIKANISHYSEFQVVNRILTCKNDSIIEVPCNRSDIFSSSFLSMIEKRTLMKFLTLCLEFDADSPSEDVKEYQEKSFVEFLQSRRLSENLQKFIIFSIAMVKPN-TSTLEGLKETCSFLKSLGRYGKSPFIWPLYGVGELPQAFCRMSAVFGALYCLGKSPVELKI--EENKCTHVVLE-NQTIKCAHVVMNRSFLPQSYLNPSVSRNKVSKAILITNGSILPSET-EFISFLTIPPLAGKEELVRVIELGPSAAACPAGLYVLYLTCKSTGKALQDLKD--------YVHLLTETQSDDKPKLLWSIYFNELADNNDVV-----DLPENLSVTTMPGSSLGFKDVVENAEMISKRIFPDGEFLMTVPNAEDIVWDTD 2296
D LP FDV++IGTGL E+I+AA+ SR G+ VLH+D YYG +WA+F+F +L W YQ+ N + +SD EN++ + D I ++E+ + + D+ ++ +++S + +P+ D++ + +CE + + PS + E + + G E +++ ++K P S + + I + K I+ RRFN+D+ K L+S G L++ +IK+N+S Y+EF+ + RIL + + +VPC+R+D+F+S L+M+EKR LMKFLT C+E++ P E K Y+E +F E+L++++L+ NLQ ++ SIAM +ST++GLK T +FL LGRYG +PF++PLYG GELPQ FCRM AVFG +YCL S L + E KC ++ + Q I H ++ S+ P++ + V ++S+A+LIT+ S+L +++ + IS LT+P VRVIEL S C G Y+++LTC S+ A +DL+ Y + E + +KP++LW++YFN + D++D+ DLP N+ V + P LG + V+ AE + + I P+ +F PN EDI+ D D
Sbjct: 2 ADTLPSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQE-NSDIVSDSPVWQDQILENEEAIALSRKDKTIQHVEVFCYASQDLH-EDVEEAGALQKNHALVTSANSTEAADSAFLPTEDESL-STMSCEMLTEQTPSSDPENALEVN-GAEVTGEKENHCDDKTCVPSTSAEDMSENVPIAEDTTEQPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEYEK-YPDE-YKGYEEITFYEYLKTQKLTPNLQYIVMHSIAMTSETASSTIDGLKATKNFLHCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFPEN-MCSRVQYRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFAVRVIELCSSTMTCMKGTYLVHLTCTSSKTAREDLESVVQKLFVPYTEMEIENEQVEKPRILWALYFN-MRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQEICPNEDFCPPPPNPEDIILDGD 619
The following BLAST results are available for this feature:
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