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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019887 ID=TCONS_00019887|Name=TCONS_00019887|organism=Clytia hemisphaerica|type=transcript|length=3268bpRun BLAST on NCBI transcript from alignment at sc0000339:240993..262663+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019887 ID=TCONS_00019887|Name=TCONS_00019887|organism=Clytia hemisphaerica|type=transcript|length=21671bp|location=Sequence derived from alignment at sc0000339:240993..262663+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00019887 vs. Swiss-Prot (Human)
Match: STIM1 (Stromal interaction molecule 1 OS=Homo sapiens GN=STIM1 PE=1 SV=3) HSP 1 Score: 250.366 bits (638), Expect = 1.742e-70 Identity = 147/389 (37.79%), Postives = 233/389 (59.90%), Query Frame = 3
Query: 747 SFLAIRAVHQHLDDDSDGSIDTGESQEYLDEELE-ASSSKRHLALHTHDNFISVDELWESWQESPVYSWTTDQVIDWLKNVVGLPQYEKKFRQKKINGKCIPRIATDKSSFLQIELGVQNPRHRRKIYLRASDIILFGAPEIA-SNHHKDMVIAIIVLISTLLCLYAFREKRMSKLQIENMSKDLMALQQAEDNLKAMQETLADA-EQSLNGENSSXXXXXXXXXXXXXXXXXXXXHQE-RNKSQEEKIKLALVEQELSEVRXXXXXXXXX-XXXSRTHPPQALQLWLQKTYQMESEYFKLRKDIAMTQMNEAKEACEGVSKARRTMFGSLRLAHGQTIDVVDQKIINAKSALAEVTNMLQERQHRWMEIEDLCQFTIASD-GLYGNIS 1895
SF A+R +H+ +DDD++G +D ES E+L E+L + +H H D ISV++LW++W+ S VY+WT D+V+ WL V LPQYE+ FR+ +++G +PR+A ++ L + + HR+K+ L+A D +LFG P + NH KD ++ + ++I C +A+ + R SK ++ M KDL L +AE +L +QE L A E+ E + L + K+ + +E R ++ E+ + E+EL +VR AL KAE E S + P+ALQ WLQ T+++E +Y+ ++K A Q+ AKE E + K R T+FG+ +AH ++D VD KI+ AK AL+EVT L+ER HRW +IE LC F I ++ G++ ++
Sbjct: 64 SFEAVRNIHKLMDDDANGDVDVEESDEFLREDLNYHDPTVKHSTFHGEDKLISVEDLWKAWKSSEVYNWTVDEVVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQLKALDTVLFGPPLLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREALRKAEKELESHSSWYAPEALQKWLQLTHEVEVQYYNIKKQNAEKQLLVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEVTAALRERLHRWQQIEILCGFQIVNNPGIHSLVA 452 HSP 2 Score: 111.309 bits (277), Expect = 6.938e-25 Identity = 51/141 (36.17%), Postives = 90/141 (63.83%), Query Frame = 3
Query: 294 NFDAIKSLHAVLDDDQDGIVNHDESADYMRENELEDTDTKQNYMFIDDSDQKISVDELWVKWTRNKVYKWSVEEVIHWLKYTVYLPEYARIFRQHKVNGKQIPRLATPQDSYLQKELKISNVQHRRKIYIRASDLILFGVP 716
+F+A++++H ++DDD +G V+ +ES +++RE+ L D + D+ ISV++LW W ++VY W+V+EV+ WL V LP+Y FR+ +++G +PRLA + LK+++ HR+K+ ++A D +LFG P
Sbjct: 64 SFEAVRNIHKLMDDDANGDVDVEESDEFLRED-LNYHDPTVKHSTFHGEDKLISVEDLWKAWKSSEVYNWTVDEVVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQLKALDTVLFGPP 203 The following BLAST results are available for this feature:
BLAST of TCONS_00019887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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