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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019884 ID=TCONS_00019884|Name=TCONS_00019884|organism=Clytia hemisphaerica|type=transcript|length=1776bp
ATGTTTACTTCACTAAAAAATTTAATCagtttgtttttgaaataaaatct
ttcaCTCGCAtaaactgaaaaagaaatttctcactctttgattttgtgtt
ttgttgttaTATTCAAGAAATTTCAGATGTCAAGGAAGCGGATACCAGGG
AGCAATCAGTTCTACCTTGATATATCACCTGAACAAAGTTTTATCCTTAT
TAACAAACGCCTCTACATGCCAAGCGAACATTCACACACTTTTAGAAGCA
AACGTAATCACAGAAAGAAGATGGAGAAAAGAGAGAAACGAAGGAAAGTA
CgcgatgaaaagaagaaaaaggcgTCCTTCAAAACCATCGGCTTGTATGT
TACTATTGGCAACCATTTCATCAAATCCATCAAACGAGGTCACATCTCCA
ATGATACGACGACAACGTTTGATGATCTCTTTACGCCACGTGATAGTTTT
GTCGTGGAAGatgaaaaagaactttttaaagCCTGTGTTACACCACGACC
TCCTATGTCTAACACAATGCGCAAGATCATTCTCGATTTGAACCAATGTC
ATTTAATGGATAAAAACTCCAACACCATTCAAGAAGAAAGAGAAGAATCG
GAACAGCCGCCACTCAacgaaaaccaacctttaaaAAGAGCAAAATGGAA
TAATTTCGTAGACCAGCAAATCATCTCTCGGCAACGTTTCTTGAACACTT
TTACTACAGACCTTGCATTTCGAAAAGAacatttacaaaaagaaaaacaa
gctGAGCGAGAAGCAGTACAAAAGAGGCTAACTCACGAACTGAAACTTCC
AAAGGTATCCAAAACGACGGAGGATTTAATTTTACGGCGGACGAACCTCG
ATAGTAAACTGCAAATCATGAAGATTTGCCATCAGAATCGTTTACAATAT
AAAGAAGAATTCGTAGCGAGGACGTCTCGTAGTAACACCACCTCTGTACG
ACAACATCGAAAAAAGACGATGCTTCGATGTAGAAGTTGGCATTCAACGT
CTCATCCTGACAGTAATGGGGAGAATTGTCAAACACGAAAAACTTACTCC
ATCAAATGAGGTGGATCTCTGNCTGCAAATCATGAAGATTTGCCATCAGA
ATCGTTTACAATATAAAGAAGAATTCGTAGCGAGGACGTCTCGTAGTAAC
ACCACCTCTGTACAACAACATCGAAAAAAGACGATGCTTCGATCTAGAAG
TTGGCATTCAACGTCTCATCCTGACAGTAATGGGGAGAATTGTCAAACAC
GAAAAACTTACTCCATCAAATGAGGTGGATCTCTGAAGAAAAATTGATAt
agttttctttcaataaaactCAATAAAACTTAAAGACTTAAAAGTTTCGT
GCTTCTGCACTTGTTCAAAAGTACAAGAGAAATCTGGATATTTGAAGAAG
TATATTTTATGAAATGAGTTAACCTTGACTATAGGCTAAATCGACTTTGA
CACCTTCGAAAATGAGCCATTAGTTTCGACAGATGGTTAAGACATACATA
CCTTCCCATTACACATattttaacacccctgtgtcacagatccgCTGGGG
CCCAtctccactggaaaatttggcaaatattCCGTCCCCGTtgggaaaat
accctaaaatttcagcccCNCCCGCTGGGGCCTAtctccactggaaaatt
tggcaaaaattccGTCCCCGTtgggaaaataccctaaaatttcagcccca
ctgagaaattgactttgatttcatccccattcgaaattcattgtttaaga
aattgcactctaaaaccatatcccac Run BLAST on NCBI protein sequence of TCONS_00019884-protein >TCONS_00019884-protein ID=TCONS_00019884-protein|Name=TCONS_00019884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
MSRKRIPGSNQFYLDISPEQSFILINKRLYMPSEHSHTFRSKRNHRKKME
KREKRRKVRDEKKKKASFKTIGLYVTIGNHFIKSIKRGHISNDTTTTFDD
LFTPRDSFVVEDEKELFKACVTPRPPMSNTMRKIILDLNQCHLMDKNSNT
IQEEREESEQPPLNENQPLKRAKWNNFVDQQIISRQRFLNTFTTDLAFRK
EHLQKEKQAEREAVQKRLTHELKLPKVSKTTEDLILRRTNLDSKLQIMKI
CHQNRLQYKEEFVARTSRSNTTSVRQHRKKTMLRCRSWHSTSHPDSNGEN
CQTRKTYSIK Run BLAST on NCBI transcript from alignment at sc0000339:235664..237890+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019884 ID=TCONS_00019884|Name=TCONS_00019884|organism=Clytia hemisphaerica|type=transcript|length=2227bp|location=Sequence derived from alignment at sc0000339:235664..237890+ (Clytia hemisphaerica)
ATGTTTACTTCACTAAAAAATTTAATCagtttgtttttgaaataaaatct
ttcaCTCGCAtaaactgaaaaagaaatttctcactctttgattttgtgtt
ttgttgttaTATTCAAGAAATTTCAGATGTCAAGGAAGCGGATACCAGGG
AGCAATCAGTTCTACCTTGATATATCACCTGAACAAAGTTTTATCCTTAT
TAACAAACGCCTCTACATGCCAAGCGAACATTCACACACTTTTAGGTAAG
TGCTCTTTATTAAACGTgttatcaatttttaacaaaaagagtTATTTAGT
TTTTAAGTAAAGGCACTATGAAGTTCTCGCCGTGAACTCATAAAAGCTTT
TCATTTAGCATATTAAGATGACTTATTACAATTTCGCCGTAGTTTTGAGA
GTACGTTTTCAATATCGTTTTGCAATTTTATTTGAAGGAACAACTAGTAA
AATGAAATCACAACTAAAAACCAAATAAGAATTAAGTTGTGAAACTATTC
TTATCGCGAAATGTGAAGATAGTGTCAAATGCTTTTGTTTTCGACATCAA
AAAGTGATATCTCAAGCTTCTATAAATTATTTAATACGGGGTCTGATATT
CTTTTCACTTGTTCtgtcttttgataaaacaggtttttttacGGATTTCC
CTCTACTTACTCTATTACTCCTTATTTTTCACATTGGTATTTTCAGAAGC
AAACGTAATCACAGAAAGAAGATGGAGAAAAGAGAGAAACGAAGGAAAGT
ACgcgatgaaaagaagaaaaaggcgTCCTTCAAAACCATCGGCTTGTATG
TTACTATTGGCAACCATTTCATCAAATCCATCAAACGAGGTCACATCTCC
AATGATACGACGACAACGTTTGATGATCTCTTTACGCCACGTGATAGTTT
TGTCGTGGAAGatgaaaaagaactttttaaagCCTGTGTTACACCACGAC
CTCCTATGTCTAACACAATGCGCAAGATCATTCTCGATTTGAACCAATGT
CATTTAATGGATAAAAACTCCAACACCATTCAAGAAGAAAGAGAAGAATC
GGAACAGCCGCCACTCAacgaaaaccaacctttaaaAAGAGCAAAATGGA
ATAATTTCGTAGACCAGCAAATCATCTCTCGGCAACGTTTCTTGAACACT
TTTACTACAGACCTTGCATTTCGAAAAGAacatttacaaaaagaaaaaca
agctGAGCGAGAAGCAGTACAAAAGAGGCTAACTCACGAACTGAAACTTC
CAAAGGTATCCAAAACGACGGAGGATTTAATTTTACGGCGGACGAACCTC
GATAGTAAACTGCAAATCATGAAGATTTGCCATCAGAATCGTTTACAATA
TAAAGAAGAATTCGTAGCGAGGACGTCTCGTAGTAACACCACCTCTGTAC
GACAACATCGAAAAAAGACGATGCTTCGATGTAGAAGTTGGCATTCAACG
TCTCATCCTGACAGTAATGGGGAGAATTGTCAAACACGAAAAACTTACTC
CATCAAATGAGGTGGATCTCTGNCTGCAAATCATGAAGATTTGCCATCAG
AATCGTTTACAATATAAAGAAGAATTCGTAGCGAGGACGTCTCGTAGTAA
CACCACCTCTGTACAACAACATCGAAAAAAGACGATGCTTCGATCTAGAA
GTTGGCATTCAACGTCTCATCCTGACAGTAATGGGGAGAATTGTCAAACA
CGAAAAACTTACTCCATCAAATGAGGTGGATCTCTGAAGAAAAATTGATA
tagttttctttcaataaaactCAATAAAACTTAAAGACTTAAAAGTTTCG
TGCTTCTGCACTTGTTCAAAAGTACAAGAGAAATCTGGATATTTGAAGAA
GTATATTTTATGAAATGAGTTAACCTTGACTATAGGCTAAATCGACTTTG
ACACCTTCGAAAATGAGCCATTAGTTTCGACAGATGGTTAAGACATACAT
ACCTTCCCATTACACATattttaacacccctgtgtcacagatccgCTGGG
GCCCAtctccactggaaaatttggcaaatattCCGTCCCCGTtgggaaaa
taccctaaaatttcagcccCNCCCGCTGGGGCCTAtctccactggaaaat
ttggcaaaaattccGTCCCCGTtgggaaaataccctaaaatttcagcccc
actgagaaattgactttgatttcatccccattcgaaattcattgtttaag
aaattgcactctaaaaccatatcccac Coding sequence (CDS) from alignment at sc0000339:235664..237890+ >TCONS_00019884 ID=TCONS_00019884|Name=TCONS_00019884|organism=Clytia hemisphaerica|type=CDS|length=1866bp|location=Sequence derived from alignment at sc0000339:235664..237890+ (Clytia hemisphaerica)
ATGTCAAGGAAGCGGATACCAGGGAGCAATCAGTTCTACCTTGATATATC
ACCTGAACAAAGTTTTATCCTTATTAACAAACGCCTCTACATGCCAAGCG
AACATTCACACACTTTTAGAAGCAAACGTAATCACAGAAAGAAGATGGAG
AAAAGAGAGAAACGAAGGAAAGTACgcgatgaaaagaagaaaaaggcgTC
CTTCAAAACCATCGGCTTGTATGTTACTATTGGCAACCATTTCATCAAAT
CCATCAAACGAGGTCACATCTCCAATGATACGACGACAACGTTTGATGAT
CTCTTTACGCCACGTGATAGTTTTGTCGTGGAAGatgaaaaagaactttt
taaagCCTGTGTTACACCACGACCTCCTATGTCTAACACAATGCGCAAGA
TCATTCTCGATTTGAACCAATGTCATTTAATGGATAAAAACTCCAACACC
ATTCAAGAAGAAAGAGAAGAATCGGAACAGCCGCCACTCAacgaaaacca
acctttaaaAAGAGCAAAATGGAATAATTTCGTAGACCAGCAAATCATCT
CTCGGCAACGTTTCTTGAACACTTTTACTACAGACCTTGCATTTCGAAAA
GAacatttacaaaaagaaaaacaagctGAGCGAGAAGCAGTACAAAAGAG
GCTAACTCACGAACTGAAACTTCCAAAGGTATCCAAAACGACGGAGGATT
TAATTTTACGGCGGACGAACCTCGATAGTAAACTGCAAATCATGAAGATT
TGCCATCAGAATCGTTTACAATATAAAGAAGAATTCGTAGCGAGGACGTC
TCGTAGTAACACCACCTCTGTACGACAACATCGAAAAAAGACGATGCTTC
GATGTAGAAGTTGGCATTCAACGTCTCATCCTGACAGTAATGGGGAGAAT
TGTCAAACACGAAAAACTTACTCCATCAAATGAATGTCAAGGAAGCGGAT
ACCAGGGAGCAATCAGTTCTACCTTGATATATCACCTGAACAAAGTTTTA
TCCTTATTAACAAACGCCTCTACATGCCAAGCGAACATTCACACACTTTT
AGAAGCAAACGTAATCACAGAAAGAAGATGGAGAAAAGAGAGAAACGAAG
GAAAGTACgcgatgaaaagaagaaaaaggcgTCCTTCAAAACCATCGGCT
TGTATGTTACTATTGGCAACCATTTCATCAAATCCATCAAACGAGGTCAC
ATCTCCAATGATACGACGACAACGTTTGATGATCTCTTTACGCCACGTGA
TAGTTTTGTCGTGGAAGatgaaaaagaactttttaaagCCTGTGTTACAC
CACGACCTCCTATGTCTAACACAATGCGCAAGATCATTCTCGATTTGAAC
CAATGTCATTTAATGGATAAAAACTCCAACACCATTCAAGAAGAAAGAGA
AGAATCGGAACAGCCGCCACTCAacgaaaaccaacctttaaaAAGAGCAA
AATGGAATAATTTCGTAGACCAGCAAATCATCTCTCGGCAACGTTTCTTG
AACACTTTTACTACAGACCTTGCATTTCGAAAAGAacatttacaaaaaga
aaaacaagctGAGCGAGAAGCAGTACAAAAGAGGCTAACTCACGAACTGA
AACTTCCAAAGGTATCCAAAACGACGGAGGATTTAATTTTACGGCGGACG
AACCTCGATAGTAAACTGCAAATCATGAAGATTTGCCATCAGAATCGTTT
ACAATATAAAGAAGAATTCGTAGCGAGGACGTCTCGTAGTAACACCACCT
CTGTACGACAACATCGAAAAAAGACGATGCTTCGATGTAGAAGTTGGCAT
TCAACGTCTCATCCTGACAGTAATGGGGAGAATTGTCAAACACGAAAAAC
TTACTCCATCAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019884-exon-sc0000339-1491911889:235664..235908 | TCONS_00019884-exon-sc0000339-1491911889:235664..235908 | Clytia hemisphaerica | exon |
| TCONS_00019884-exon-sc0000339-1510915933:235664..235908 | TCONS_00019884-exon-sc0000339-1510915933:235664..235908 | Clytia hemisphaerica | exon |
| TCONS_00019884-exon-sc0000339-1575043694:235664..235908 | TCONS_00019884-exon-sc0000339-1575043694:235664..235908 | Clytia hemisphaerica | exon |
| TCONS_00019884-exon-sc0000339-1491911889:236360..237890 | TCONS_00019884-exon-sc0000339-1491911889:236360..237890 | Clytia hemisphaerica | exon |
| TCONS_00019884-exon-sc0000339-1510915933:236360..237890 | TCONS_00019884-exon-sc0000339-1510915933:236360..237890 | Clytia hemisphaerica | exon |
| TCONS_00019884-exon-sc0000339-1575043694:236360..237890 | TCONS_00019884-exon-sc0000339-1575043694:236360..237890 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000339 | supercontig | sc0000339:235664..237890 + |
Blast
The following BLAST results are available for this feature:
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