TCONS_00019883 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019883
Unique NameTCONS_00019883
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019883 ID=TCONS_00019883|Name=TCONS_00019883|organism=Clytia hemisphaerica|type=transcript|length=2382bp
TGTAGCAcatatttaataaaaacaagaaaagatTTGGTATGGTTTGGCTT
GCTTGAGGGGAGAGGAATGTCAAACAAGACGCACTCCGAGTCTGACTCAT
CCCCTGAAGAAAACAAGTTGTATATTTCACCAAGTTTCGTGCGTGATCGC
GAGGAGAAAGGATGGCGGTCGTACGCTACCTCCTCCGAACTGATGACTAC
TGCATCTGCCATCTTCAGTCAGATTAACAACCCTTCGCCTGATGATGATA
ATCAAGTCAACTTTTTGTACGACTATTATGGAATGACTGATGAAACGAGA
CAAGAACCTCCCTCTCCTGGTCATTCCCCCGTCACTTGcACTTCAAAAGA
GATAGCAGAACATCATGGTGAGGAAGGCTCATCTTCATCAAGAGAGCACG
AATATGAGGAACACCACGCCTATCACCATCACCACCACCATATCAATGTC
TCGGACAATGTGGATATACCCTTAACCTCCAAAGATAATGTGAGCCCAGA
ACTGGAGCCAAGACATAGttTCGCTGAAAAACCAACATTATCCATCTTCT
CTTCGCAAGCTTCTGAGTCGTCAGCCAACAATCAAAGGAAGTCTTACAGC
TCCATTCCACCTCTCAACAAGAACGAGAAAAGCTCAAGCAGCCATGCGAA
TACTAGCTCGCCAGTCATCGAAACAGAATCTGCACCTAAGTCCAGTTTCA
ACCACTATTCTCGCCCGATGCTTTACTATGAAGACAATAATCAATTGTCG
TTTAGATACATGTACGTTTTGGAAGCACAAACCTCATTGGTGCAAAAGCG
TGGTGAAGATTCTCTGACATACCTCAACAAAGGTCAATTTTATTTCATCA
GTTTTGAGGCTCAACATTCGAAAGCAGTCCGAGTTAAGTCCATCATCCAC
CTTGTATTTCGCAATGAGAAAGAACCCGATAATGAGCTGACTCATTGGAG
GTACTGGTACAACCAGCAACCCAATCCCAACCAACGAGCTTTGGACATCG
ATATGAAGTCCTGTCAAAACATTGAAGATGTGGAGGAGGTCGGATATAAC
GCTCTCGCTGTTTACTGGGACCCTAATGCAAAATCAAAGGTCTCTCTGCG
CATCAACTGTTTGAGTACCGATTTTTCCGCCCAAAAAGGAGTGAAGGGCA
TTCCATTACACTTACAAATTGACACTTTCGAAGATTTTTCTGACGCTACC
ATCCCCACACATCGAGCATTCTGTCAAATCAAAGTGTTCAGAGACAAGGG
TGCTGAAAGGAAGAACAAAGATGAAGCGAAAACTGTCAACAAAAGAGTGG
TCAAATATTTGAAAGGATCAGACAACGCACAAGCAGACATGTTGCACGTT
TTTCAGATGCAGAACAAAGTGACATTTCTTTATCCTACAACCAACATCCT
GTCCAAGTCCGTTGTCTTCGTCCCTCCTAAAGAACGTGAAAAAGAACGAA
CGAGATCAACAGACGGAGCAACTTCGATTAATACTGGTGGATTCTTCTCG
CAGTTAAGAGAGCGAGAAAACAAACGAGGATTCAATGCGGCCCTTTCAAA
TGCaaagGACGATTTGGAACAACTAGATGTTCTTCCTCGGTCAAAGAAAG
CCAACTTTTGTATGAAGAAATCACCAGccgtcACAATATATGTAcgcaaa
gaagaagaaaaagcttACAATGCTTTGATGTTAGAAGTTGCAACTCTTGA
CTCGCTTAAAAATGCTATTTCAGTCAAATATAATGTTCCAGAAGAGATGA
TCAAACAGGTCTTTAAGAAGACCAAAAAAGGGATTTTGGTGTTTGTTGAC
GATCAGTTGGTGGAGCAATTTGTGGATGAAGATGACTTCCTCATTTCCAT
CGACTTCGATAATCAAATGGGTCATTTTGAAGTGGTCTTCAATTGCTGAT
TTAATTTAATTAGTAGGCTTTTCGAGTTGGTAAATCAGTCGAAAAATTTC
GCTCATTCCACTACttcaaaatatctttccaacaggtTCCTCGACAATAA
GAGTTTTCAttgctttttatttcaaaatttgtttcgaccgttttttttac
ttttgcagACTTTTTGTGTTTTAGTGGCAATCTTTTTTACTGGTAGTATG
CATGCATTTCAAAGTAATatttaaaatttacttttttattgactttagct
tttctaaaatatttttcagggtAGAAAGGCTAGAATTAATTCTACTCCAG
AAAGCAATCCCAATTGCTTCTTCTCCCCCAGAAAATATTGTTTTTTATTT
TGATAAACTTTTTGGAAGTCTTTTTTATGAGAAGGTGTTTATTATATTGT
AACAGAGAAAAAGAGATAACTCATAACATTTGTACATAGAAAGATGATTT
GTTTTTATCAAATATTATATCCACCTCAATAT
Run BLAST on NCBI

transcript from alignment at sc0000339:226492..235497+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019883 ID=TCONS_00019883|Name=TCONS_00019883|organism=Clytia hemisphaerica|type=transcript|length=9006bp|location=Sequence derived from alignment at sc0000339:226492..235497+ (Clytia hemisphaerica)
TGTAGCAcatatttaataaaaacaagaaaagatTTGGTATGGTTTGGCTT
GCTTGAGGGGAGAGGAATGTCAAACAAGACGCACTCCGAGTCTGACTCAT
CCCCTGAAGAAAACAAGTTGTATATTTCACCAAGTTTCGTGCGTGATCGC
GAGGAGAAAGGATGGCGGTCGTACGCTACCTCCTCCGAACTGATGACTAC
TGCATCTGCCATCTTCAGTCAGATTAACAACCCTTCGCCTGATGATGATA
ATCAAGTCAACTTTTTGTACGACTATTATGGAATGACTGATGAAACGAGA
CAAGAACCTCCCTCTCCTGGTCATTCCCCCGTCACTTGGTAAGTCGTTGC
ATgacttcctttttttctttttttcaatttctatctAGAATTTACGTAAC
AATACTGAATTTTGCGAGGACTTTCTTTCTTCTTAGTACGCAGTATATAA
TTAGTTATGTGATCGTTGAGGCCAATGAGTGAAAGTTTCAtctcattttt
ttatttattcattcattcagcACTTCAAAAGAGATAGCAGAACATCATGG
TGAGGAAGGCTCATCTTCATCAAGAGAGCACGAATATGAGGAACACCACG
CCTATCACCATCACCACCACCATATCAATGTCTCGGACAATGTGGATATA
CCCTTAACCTCCAAAGATGTAAGTCGTTAGCTGTAATCTCCTCAcatatc
aaacaaactgtatgatGTCCTAAAGTTTGAATTAAGTTTAGTAAAAATTT
GGTTCAAACTTGTTTGGAAAATGGACAGCATTGGCTAGGCTATCGATCTG
AGTTTTCGGCGTTGCAGATCCTAAAGGCTATCAACTGGCAAGTACTTATG
GAGCTTTGATAAACTCGTCTCACTGTTGGCTTGTCTTCAATAACAATCAT
AGTCATATGCATTTTAAGATAACTTTGTTATGTTTTGTTTTAGAATGTGA
GCCCAGAACTGGAGCCAAGACATAGGTTTGTACTTACCActttagaaatt
tcaaagaccTTCAAATAAGACTACATCAATAGACAGTCATTAATCAAAAT
GAACAgaattgaaagtttcaaaaacattttcttctttttttagttTCGCT
GAAAAACCAACATTATCCATCTTCTCTTCGCAAGCTTCTGAGGTAAAATA
AAAGTTCCTTTTTGAGGGAATAATTAATACTGGGAATTGCAATTCCCCAC
GCATCCTATTGAAATAAGGGTAACCAgtttaacttgtttttttttaacac
aCAGTCGTCAGCCAACAATCAAAGGAAGTCTTACAGCTCCATTCCACCTC
TCAACAAGAACGAGAAAAGGTATTTATAACTCTTCTATTCATCTTATTAA
TAAACTTATCGCCATGCAGTTTTCCTCCTTTCAATTTCTCACTTTATTGA
ATCTTATTATTCCTTGCAGCTCAAGCAGCCATGCGAATACTAGCTCGCCA
GTCATCGAAACAGAAGTAAGTTATCTTTCTATGCCTCCATTTGTTAGTTA
GTAAAATTTGTTAGGTAATTGCTTTTAAATAAACCACTCCAATATTTTGT
TATTCGACCAGTCATGTTACTcattgtaaaatattttaaacgaCTACATT
GTTTTCTCTTCATTTAGTCTGCACCTAAGTCCAGTTTCAACCACTATTCT
CGCCCGATGCTTTACTATGAAGACAAGTATATatcactttctttcttttc
tcaCCACTCATAATTTGTATGCATTCAACTGGTTTACAAACCTTTTGTGT
TGTCAGTAATCAATTGTCGTTTAGATACATGTACGTTTTGGAAGCACAAA
CCTCATTGGTGCAAAAGCGTGGTGAAGATTCTCTGACATACCTCAACAAA
GGTAAGCNGTAAAATAAAAGTTCCTTTTTGAGGGAATAATTAATACTGGG
AATTGCAATTCCCCACGCATCCTATTGAAATAAGGGTAACCAgtttaact
tgtttttttttaacacaCAGTCGTCAGCCAACAATCAAAGGAAGTCTTAC
AGCTCCATTCCACCTCTCAACAAGAACGAGAAAAGGTATTTATAACTCTT
CTANGAATTCCATGCTTTGAAATAAGAGTTCTTCTTTCAGATAATTCTTT
GGTACATGATGTTAGTCTGATTAATTTCCCCTCTTTTCTCGTATGACAGG
TCAATTTTATTTCATCAGTTTTGAGGCTCAACATTCGAAAGCAGTCCGAG
TTAAGGTAAGTCGAGTGACATCAATAGCTCTTTTTACAAACTACGTCATT
AACTTCACACTCATATTAATGTTGCAGCACTTTATCCCAAATGATCCATT
CTATTTACCAAAGTAAAGCTGTTGTCCATGATAACGTAATGTACGATGAA
TTAAAGCCCACTTTAGTGACTTCACATCGAGGTTTTTTATAGCTAAATTT
AGGGCTAGACCCTTCTTTGCATTGAATACTTTGAAAATGGGCTCAATCAT
AGAttgtaatttgattttctgaaggttttcttgattttactcacTAAAGC
AACTGCGGTGACACGTTGATGGAgtgaaatgaaacattttacTACTTCCG
TGGTTTGGTAGCATGCCTTCTCTTCTCTATTTTATCTTGTTACTTTCAGT
CCATCATCCACCTTGTATTTCGCAATGAGAAAGAACCCGATAATGAGCTG
ACTCATTGGAGGTACTGGTACAACCAGCAACCCAATCCCAACCAACGAGC
TTTGGACATCGATATGAAGTCCTGTCAAAACATTGAAGATGTGGAGGAGG
TCGGATATAACGCTCTCGCTGTTTACTGGGACCCTAATGCAAAATCAAAG
GTATCTATTTCCTACTTACAGCGCTCTATTTTCCATTTTCCGTCTGAAAT
GAAAAACTGGGCTTTGACCACTGTACTTAAGCTCAAAATGTTTAGAATAA
GCCATTTTTAAGATGTAGGTTAAAAGAGTTTGCTGAAAATGCTAACTCAA
GGTGAAACAGATTTATTTCTTTGATGGGTAAAGTCTTTGTGACTTTCCCT
TCAATTTAATGGTGAGTTAGAATGAATTCATTGAGCAGATATGTTTGGAT
TAAAACagattgttctcatttttcacCATTTCAGGTCTCTCTGCGCATCA
ACTGTTTGAGTACCGATTTTTCCGCCCAAAAAGGAGTGAAGGTATATCAT
CTCACTACTTACAAGATCTTGTTTGTACTCTTTAGATGATTTCGATTAGA
TAACTTCATGTTTGGTGCCATCAATTTATGgcacaatgctggacaaaagg
ttgtagacaaatgaaatttcagtgaaaaatgatgagaaatagagcaaaat
gactcttcgatgtgtctgaaaggggatcgaagttaagaaaaatacttttg
aagtcgttgcattgcttttgaattgcttttgagggaaccgcaagcaaaaa
atcagcgttttgatactggtgtaagccagttaatNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNttggaaagcacccagaacctcttgggaactt
gtttttgatcgatattgaagtattttgcaaatattgcagaagtctacaaa
ccttttgtccagcattgcaGAATTTTTTAGAGCACAATAtttgtatctgc
attttcttttGTAGACATGACACGCTATACGAAGCGACTTTTTGTTTCTT
CTAAAATGTAATCTAGGGCATTCCATTACACTTACAAATTGACACTTTCG
AAGATTTTTCTGACGCTACCATCCCCACACATCGAGCATTCTGTCAAATC
AAAGTGTTCAGAGACAAGGTAACTAGAAAAATCGCTTTCTTCGCTTGAAT
GCTGGAGTTTCCAGTTTGTTGTTTGAATACTTCGAAGACATTTAACCAAG
ACTACTGTTTAATCTGGGAAATAGTAAAACGTCGACTTGCGTTtgaagtt
gcttataaaaagttcGTATCCTCGATGGAAGCAAAACTAACGTGTTTCtt
ggtttttgttattttatagAAAGTACAGGCAAGTAAGGAAACTAAAAGTC
AAACCTGTTTAAGATCTCCTGTAAAACGAGTTCATTTACTATTCCTTGTT
TTCTTCGTGTATAACGAGACGACATCGAGTATAAAGCTTTTCCATTCTTC
CCTAATAGGGTGCTGAAAGGAAGAACAAAGATGAAGCGAAAACTGTCAAC
AAAAGAGTGGTCAAATATTTGAAAGGATCAGGTTTGTTCTCTTACTTCTA
ATTCATCTTCAGAGAAACTGATATCAAGCACCaacaatgaatttttttct
tcatatctGTTCATGTTAGGGGTGAGGGCCAGCACATTTACATCGGTGTG
TATTGCCCAGTTTCATGGAAGCTATTgattcaatttaatttacttttctt
CGTAGACAACGCACAAGCAGACATGTTGCACGTTTTTCAGATGCAGAACA
AAGTGACATTTCTTTATCCTACAACCAACATCCTGTCCAAGTCCGTTGTC
TTCGTCCCTCCTAAAGAACGTGAAAAAGAACGAACGGTATCATGAATTAT
TTTCTTaatcggtttgaaaaatccatcGAGCTTTTCTCTTTATGTACTGA
TTCCACGCCCATAAAAGAGCTTTGTTATTGGTTACAAAATAGTTTGAAGA
ATGTTAAGAGCGTTTCCTAGTTAAGCTTTAAGATTGATGATTGATCAGTA
AATCATCGTATCACATTGCACTTGCCTCTTCATTAGTTTACAAAATAACC
CTTGCGCTTGTTGTGTTCTTCTAGAGATCAACAGACGGAGCAACTTCGAT
TAATACTGGTGGATTCTTCTCGCAGTTAAGGTAAAGCAATTGATGATGGG
TTTTTTCATGAGTTTCTTTGTAAACAATTTGTAGGGACGGTTATCGCTAA
CATAGTGACTTAAGTATTCCTTTTCGTGTCAAATTTTCAGAGAGCGAGAA
AACAAACGAGGATTCAATGCGGCCCTTTCAAATGCaaaggtaattttttt
actttatgtTTCATGTTAAttagaaatttacaaaaatctttCATGTTATA
TTGATGTCATAGAGGACTTACTTGCAGAGTTTTGTATATTGTGTTTCTCT
TTAGGACGATTTGGAACAACTAGATGTTCTTCCTCGGTCAAAGAAAGCCA
ACTTTTGTATGAAGAAATCACCAGGTAATGATTTGATGAATGTTCTCGTC
CTCTCCTTGCTATTCTCAAACATTTGACAGTTCGTTAACTCcatcaaaaa
accttttttagccGTCACTATATATGTAcgcaaagaagaagaaaaagctt
ACAATGCTTTGATGTTAGAAGTTGCAACTCTTGACTCGCTTAAAAATGCT
GTAAGTTAAATCTTTTGTTCCCTGATATTTCCTTCCAAGTCGTTGTTAAG
TGATCGAAGTATTAGTGAGCGTGTCACTCTTACTTGTCTGGTAGGCTTTA
ATGTGTtacagtagactcccggttattcgaagctccAAGGGGTTTGagaa
tttacttcgaataaccgggagttcAAATAACTGCAAAATTCATTTTCCCA
CCAGATTCTAAAATTAACCTTAATTGGAGGGGCTTTTCTGAAGTAATTGA
GGCATTGCAGTTCAGTTGAGCGtaataaacacaaagaaattgcTTGAATA
GCGATATATAGCCCTGAATATTGAAACctgatttttaaaggaaaaaaatt
atttcaatcgCAGATCTCCCaataagaaaaattcgaataaccGAGGGTGA
TTTAGACTAGAATGTACCCCAAGGGGAAAAGAAATcgcttcgaataactg
aaagttCAAATAACTGAAGTTCGAATAACCGAAAGTGTTTTTGCCTGGGT
TGAGTAAGCAGATCCAAGGGGAACGCCATCTCACTTCGAATAACCAAATG
TGCAggttcgaataaccgggagtctactgtaTTCGTCAGTGAGACGGAAG
TGGCAACTCATGTGGCTCATTCATTCTAAATAAACAATTTCTCGCGTTTT
TCATTTAAAGATTTCAGTCAAATACAATGTTCCAGAAGAGATGATCAAAC
AGGTCTTTAAGAAGACCAAAAAAGGGTACGGcctgtttttcaataatttc
ttcaaTTACTTGTTTCAcgatgtttttttgtttgtttttttatgttaACT
GTGATGTTTCaaacttcaaaattttgtttcattttattgtGTGATGTTTT
ACTTAATGACCTTGGGCCTTCATGAAGAAACAATTTTGAGTTCTTCTTCG
GTCAGAATCCTACTAAAACTgtttgaagaaaagaaaatcataaaaagtaa
tgcaATTTTGAACATTTGTTCTTTTCCAGGATTTTGGTGTTTGTTGACGA
TCAGTTGGTGGAGCAATTTGTGGATGAAGATGACTTCCTCATTTCCATCG
ACTTCGANCGTATCACATTGCACTTGCCTCTTCATTAGTTTACAAAATAA
CCCTTGCGCTTGTTGTGTTCTTCTAGAGATCAACAGACGGAGCAACTTCT
ATTAATACTGGTGGATTCTTCTCGCAGTTAAGGTAAAGCAATTGATGATG
GGTTTTTTTCATGAGTTTCTGTGTGAACAATTTGTAGGGACGGTTATCGC
TAACAGTAGAGTGACTTAAGTATTCCTTTTCGTGTCAAATTTTCAGAGAG
CGAGAAAACAAACGAGGATTCAATGCGGCCCTTTCAAATGCaaaggtaat
ttttttactttatgtTTCATGTTAAACTAGAAATTTACAAAAACCTTTCA
TGTTATATTGATGTCATAGAGGACTTACTTGCAGAGTTTTGTATATTGTG
TTTCTCTTTAGGACGATTTGGAACAACTAGATGTTCTTCCTCGGTCAAAG
AAAGCCAACTTTTGTATGAAGAAATCACCAGGTAATGATTTGATGAATGT
TCTCGTCTTCTCCTTGCTAATCTCAAACATTTGACAGTTCGTTAACTCca
tcaaaaaacctttttttagccgtcACAATATATGTAcgcaaagaagaaga
aaaagcttACAATGCTTTGATGTTAGAAGTTGCAACTCTTGACTCGCTTA
AAAATGCTGTAAGTTAAATCTTTTGTTTCCTGATATTTCCTTCCAAGTCG
TTGTTAAGTGATCGAAGTATTAGTAAGCGTGTCACTCTAACTTGTCTGGT
AGGCTTTAAATTATAGTGTTATagtagactcccggttattcgaagctccA
AGGGGGTTGAtaatttacttcgaataaccgggagttcAAATAACTGCAAA
ATTCATTTTCTCACCAGATTCTAAACTTAACCTTAATTGGAGGGGCTTTT
CTGAAGTAATTGAGGCAGTTCAGTTGAAAGACAGAAACACAAAGAAATTG
CTTGAATAGCGATATATAGCCCTGAATATTGAAActtggttttttgaaga
aaaaaattatttcaatcgCAGAAAATTAATGTTCTAACTCGACGATCTCC
CAATAAGAGAAATTCGAATAACCGAGGGTGATTTAGCCTATAATGTACCC
CAAGGGGAATAGAAATCGCTTCGAATAACTGAAGTTCAAATAACTGAAGT
TCGAATAACCGAGAGTGTTTTTGCCTGGGTTGAGTAAGCAGATCCAAGGG
GAACGCCATCTCACATCGAATAACCAAATtattcgaataaccgggagtct
actgtaTTCGTCAGTGAGACGGAAGTGGCAACTCATGTGGCTCATTCATT
CTGAATAAACAATTTCTCACGTTTTTCATTTAAAGATTTCAGTCAAATAT
AATGTTCCAGAAGAGATGATCAAACAGGTCTTTAAGAAGACCAAAAAAGG
GTACGGcctatttttcaataatttcttcaaTTACTTGTTTCacgatgttt
tttttgtttgtttttttatgttaACTGTGATGTTTCaaacttcaaaattt
tgtttcattttattgtGTGATGTTTTACTTAATGACCTTGTGCCTTCATG
AAGAAACAATTTTGAGTTCTTCTTTGGTCAGAATCCTACTAAAACTgttt
gaagaaaagaaaatcataaaaagtaatgcaATTTTGAACATCTGTTCTTT
TCCAGGATTTTGGTGTTTGTTGACGATCAGTTGGTGGAGCAATTTGTGGA
TGAAGATGACTTCCTCATTTCCATCGACTTCGATAATCAAATGGGTCATT
TTGAAGTGGTCTTCAATTGCTGATTTAATTTAATTAGTAGGCTTTTCGAG
TTGGTAAATCAGTCGAAAAATTTCGCTCATTCCACTACttcaaaatatct
ttccaacaggtTCCTCGACAATAAGAGTTTTCAttgctttttatttcaaa
atttgtttcgaccgttttttttacttttgcagACTTTTTGTGTTTTAGTG
GCAATCTTTTTTACTGGTAGTATGCATGCATTTCAAAGTAATatttaaaa
tttacttttttattgactttagcttttctaaaatatttttcagggtAGAA
AGGCTAGAATTAATTCTACTCCAGAAAGCAATCCCAATTGCTTCTTCTCC
CCCAGAAAATATTGTTTTTTATTTTGATAAACTTTTTGGAAGTCTTTTTT
ATGAGAAGGTGTTTATTATATTGTAACAGAGAAAAAGAGATAACTCATAA
CATTTGTACATAGAAAGATGATTTGTTTTTATCAAATATTATATCCACCT
CAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011188XLOC_011188Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019883-exon-sc0000339-1491911889:226492..226829TCONS_00019883-exon-sc0000339-1491911889:226492..226829Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:226492..226829TCONS_00019883-exon-sc0000339-1510915933:226492..226829Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:226492..226829TCONS_00019883-exon-sc0000339-1575043694:226492..226829Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:227012..227159TCONS_00019883-exon-sc0000339-1491911889:227012..227159Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:227012..227159TCONS_00019883-exon-sc0000339-1510915933:227012..227159Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:227012..227159TCONS_00019883-exon-sc0000339-1575043694:227012..227159Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:227435..227466TCONS_00019883-exon-sc0000339-1491911889:227435..227466Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:227435..227466TCONS_00019883-exon-sc0000339-1510915933:227435..227466Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:227435..227466TCONS_00019883-exon-sc0000339-1575043694:227435..227466Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:227585..227633TCONS_00019883-exon-sc0000339-1491911889:227585..227633Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:227585..227633TCONS_00019883-exon-sc0000339-1510915933:227585..227633Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:227585..227633TCONS_00019883-exon-sc0000339-1575043694:227585..227633Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:227746..227810TCONS_00019883-exon-sc0000339-1491911889:227746..227810Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:227746..227810TCONS_00019883-exon-sc0000339-1510915933:227746..227810Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:227746..227810TCONS_00019883-exon-sc0000339-1575043694:227746..227810Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:227911..227956TCONS_00019883-exon-sc0000339-1491911889:227911..227956Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:227911..227956TCONS_00019883-exon-sc0000339-1510915933:227911..227956Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:227911..227956TCONS_00019883-exon-sc0000339-1575043694:227911..227956Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:228109..228167TCONS_00019883-exon-sc0000339-1491911889:228109..228167Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:228109..228167TCONS_00019883-exon-sc0000339-1510915933:228109..228167Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:228109..228167TCONS_00019883-exon-sc0000339-1575043694:228109..228167Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:228248..228342TCONS_00019883-exon-sc0000339-1491911889:228248..228342Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:228248..228342TCONS_00019883-exon-sc0000339-1510915933:228248..228342Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:228248..228342TCONS_00019883-exon-sc0000339-1575043694:228248..228342Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:228641..228696TCONS_00019883-exon-sc0000339-1491911889:228641..228696Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:228641..228696TCONS_00019883-exon-sc0000339-1510915933:228641..228696Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:228641..228696TCONS_00019883-exon-sc0000339-1575043694:228641..228696Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:229091..229291TCONS_00019883-exon-sc0000339-1491911889:229091..229291Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:229091..229291TCONS_00019883-exon-sc0000339-1510915933:229091..229291Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:229091..229291TCONS_00019883-exon-sc0000339-1575043694:229091..229291Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:229576..229632TCONS_00019883-exon-sc0000339-1491911889:229576..229632Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:229576..229632TCONS_00019883-exon-sc0000339-1510915933:229576..229632Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:229576..229632TCONS_00019883-exon-sc0000339-1575043694:229576..229632Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:230558..230659TCONS_00019883-exon-sc0000339-1491911889:230558..230659Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:230558..230659TCONS_00019883-exon-sc0000339-1510915933:230558..230659Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:230558..230659TCONS_00019883-exon-sc0000339-1575043694:230558..230659Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:231000..231072TCONS_00019883-exon-sc0000339-1491911889:231000..231072Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:231000..231072TCONS_00019883-exon-sc0000339-1510915933:231000..231072Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:231000..231072TCONS_00019883-exon-sc0000339-1575043694:231000..231072Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:231247..231377TCONS_00019883-exon-sc0000339-1491911889:231247..231377Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:231247..231377TCONS_00019883-exon-sc0000339-1510915933:231247..231377Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:231247..231377TCONS_00019883-exon-sc0000339-1575043694:231247..231377Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:231616..231671TCONS_00019883-exon-sc0000339-1491911889:231616..231671Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:231616..231671TCONS_00019883-exon-sc0000339-1510915933:231616..231671Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:231616..231671TCONS_00019883-exon-sc0000339-1575043694:231616..231671Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:231782..231830TCONS_00019883-exon-sc0000339-1491911889:231782..231830Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:231782..231830TCONS_00019883-exon-sc0000339-1510915933:231782..231830Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:231782..231830TCONS_00019883-exon-sc0000339-1575043694:231782..231830Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:233653..233722TCONS_00019883-exon-sc0000339-1491911889:233653..233722Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:233653..233722TCONS_00019883-exon-sc0000339-1510915933:233653..233722Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:233653..233722TCONS_00019883-exon-sc0000339-1575043694:233653..233722Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:233811..233899TCONS_00019883-exon-sc0000339-1491911889:233811..233899Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:233811..233899TCONS_00019883-exon-sc0000339-1510915933:233811..233899Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:233811..233899TCONS_00019883-exon-sc0000339-1575043694:233811..233899Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:234577..234641TCONS_00019883-exon-sc0000339-1491911889:234577..234641Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:234577..234641TCONS_00019883-exon-sc0000339-1510915933:234577..234641Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:234577..234641TCONS_00019883-exon-sc0000339-1575043694:234577..234641Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1491911889:234897..235497TCONS_00019883-exon-sc0000339-1491911889:234897..235497Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1510915933:234897..235497TCONS_00019883-exon-sc0000339-1510915933:234897..235497Clytia hemisphaericaexon
TCONS_00019883-exon-sc0000339-1575043694:234897..235497TCONS_00019883-exon-sc0000339-1575043694:234897..235497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:226492..235497 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.43132	1.97437	0.667138	0.845755	0	0	0	0	6.97166	6.39832	7.57557	6.9274	6.4207	8.73812	5.07184	5.4363	3.89088	4.12944	2.68491	2.81004	4.18939	2.69283	3.20887	6.56922	0	0	2.77506	2.85642	6.01303	3.5765
Blast
[Close]
BLAST of TCONS_00019883 vs. Swiss-Prot (Human)
Match: GRHL1 (Grainyhead-like protein 1 homolog OS=Homo sapiens GN=GRHL1 PE=1 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 4.752e-71
Identity = 149/375 (39.73%), Postives = 223/375 (59.47%), Query Frame = 1 
Query:  757 YMYVLEAQTSLVQKRGEDSLTYLNKGQFYFISF------EAQHSKAVRVKSIIHLVFRNEKEPDNELTHWRYWYNQQPNPNQRALDI-DMK-SCQNIEDVEEVGYNALAVYWDPNAKSKVSLRINCLSTDFSAQKGVKGIPLHLQIDTFEDFSDATIPTHRAFCQIKVFRDKGAERKNKDEAKTVNKRVVKYLKGSDNAQADMLHVFQMQNKVTFLYPTTNILSKSVVFVPPKE-REKERTRSTDGATSINTGGFFSQLRERENKRGFNAALSNAKDDLEQLDVLPRSKKANFCMKKSPAVTIYVRKEEEKAYNALMLEVATLDSLKNAISVKYNVPEEMIKQVFKKTKKGILVFVDDQLVEQFVDEDDFLISID 1854
            + Y LEA  SL QK G+ ++TYLNKGQFY I+       E  H    +V+S+I +VF  +K  +++L HW+YW+++Q    QR +DI D K S   I ++EE+ YNA++  WD N ++KV + +NCLSTDFS+QKGVKG+PL++Q+DT+   + +  P HRA+CQIKVF DKGAERK +DE +  +KR V       + +  +L   +  + +T   P  ++ ++ V+F+P       +R        S    G  S L     KRG        +DD     V P +K A   +++   V +YVRKE E+ ++ALML+  +L  L  AIS KY+VP + I ++FKK KKGILV +DD +V+ + +ED F + I+
Sbjct:  252 FEYTLEASKSLRQKPGDSTMTYLNKGQFYPITLKEVSSSEGIHHPISKVRSVIMVVFAEDKSREDQLRHWKYWHSRQHTAKQRCIDIADYKESFNTISNIEEIAYNAISFTWDINDEAKVFISVNCLSTDFSSQKGVKGLPLNIQVDTYSYNNRSNKPVHRAYCQIKVFCDKGAERKIRDEERKQSKRKVS------DVKVPLLPSHKRMD-ITVFKPFIDLDTQPVLFIPDVHFANLQRGTHVLPIASEELEGEGSVL-----KRG----PYGTEDDFA---VPPSTKLAR--IEEPKRVLLYVRKESEEVFDALMLKTPSLKGLMEAISDKYDVPHDKIGKIFKKCKKGILVNMDDNIVKHYSNEDTFQLQIE 605
The following BLAST results are available for this feature:
BLAST of TCONS_00019883 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRHL14.752e-7139.73Grainyhead-like protein 1 homolog OS=Homo sapiens ... [more]
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