TCONS_00019882 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019882
Unique NameTCONS_00019882
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1894

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019882 ID=TCONS_00019882|Name=TCONS_00019882|organism=Clytia hemisphaerica|type=transcript|length=1894bp
TGTAAGCATTGTATATATTGTTGCAATAGGAAAGAGAAAAGAACAcatat
ttaataaaaacaagaaaagatTTGGTATGGTTTGGCTTGCTTGAGGGGAG
AGGAATGTCAAACAAGACGCACTCCGAGTCTGACTCATCCCCTGAAGAAA
ACAAGTTGTATATTTCACCAAGTTTCGTGCGTGATCGCGAGGAGAAAGGA
TGGCGGTCGTACGCTACCTCCTCCGAACTGATGACTACTGCATCTGCCAT
CTTCAGTCAGATTAACAACCCTTCGCCTGATGATGATAATCAAGTCAACT
TTTTGTACGACTATTATGGAATGACTGATGAAACGAGACAAGAACCTCCC
TCTCCTGGTCATTCCCCCGTCACTTGcACTTCAAAAGAGATAGCAGAACA
TCATGGTGAGGAAGGCTCATCTTCATCAAGAGAGCACGAATATGAGGAAC
ACCACGCCTATCACCATCACCACCACCATATCAATGTCTCGGACAATGTG
GATATACCCTTAACCTCCAAAGATAATGTGAGCCCAGAACTGGAGCCAAG
ACATAGttTCGCTGAAAAACCAACATTATCCATCTTCTCTTCGCAAGCTT
CTGAGTCGTCAGCCAACAATCAAAGGAAGTCTTACAGCTCCATTCCACCT
CTCAACAAGAACGAGAAAAGCTCAAGCAGCCATGCGAATACTAGCTCGCC
AGTCATCGAAACAGAATCTGCACCTAAGTCCAGTTTCAACCACTATTCTC
GCCCGATGCTTTACTATGAAGACAATAATCAATTGTCGTTTAGATACATG
TACGTTTTGGAAGCACAAACCTCATTGGTGCAAAAGCGTGGTGAAGATTC
TCTGACATACCTCAACAAAGGTCAATTTTATTTCATCAGTTTTGAGGCTC
AACATTCGAAAGCAGTCCGAGTTAAGTCCATCATCCACCTTGTATTTCGC
AATGAGAAAGAACCCGATAATGAGCTGACTCATTGGAGGTACTGGTACAA
CCAGCAACCCAATCCCAACCAACGAGCTTTGGACATCGATATGAAGTCCT
GTCAAAACATTGAAGATGTGGAGGAGGTCGGATATAACGCTCTCGCTGTT
TACTGGGACCCTAATGCAAAATCAAAGGTCTCTCTGCGCATCAACTGTTT
GAGTACCGATTTTTCCGCCCAAAAAGGAGTGAAGGGCATTCCATTACACT
TACAAATTGACACTTTCGAAGATTTTTCTGACGCTACCATCCCCACACAT
CGAGCATTCTGTCAAATCAAAGTGTTCAGAGACAAGGGTGCTGAAAGGAA
GAACAAAGATGAAGCGAAAACTGTCAACAAAAGAGTGGTCAAATATTTGA
AAGGATCAGACAACGCACAAGCAGACATGTTGCACGTTTTTCAGATGCAG
AACAAAGTGACATTTCTTTATCCTACAACCAACATCCTGTCCAAGTCCGT
TGTCTTCGTCCCTCCTAAAGAACGTGAAAAAGAACGAACGAGATCAACAG
ACGGAGCAACTTCGATTAATACTGGTGGATTCTTCTCGCAGTTAAGAGAG
CGAGAAAACAAACGAGGATTCAATGCGGCCCTTTCAAATGCaaagGACGA
TTTGGAACAACTAGATGTTCTTCCTCGGTCAAAGAAAGCCAACTTTTGTA
TGAAGAAATCACCAGccGTCACTATATATGTAcgcaaagaagaagaaaaa
gcttACAATGCTTTGATGTTAGAAGTTGCAACTCTTGACTCGCTTAAAAA
TGCTATTTCAGTCAAATACAATGTTCCAGAAGAGATGATCAAACAGGTCT
TTAAGAAGACCAAAAAAGGGATTTTGGTGTTTGTTGACGATCAGTTGGTG
GAGCAATTTGTGGATGAAGATGACTTCCTCATTTCCATCGACTT
Run BLAST on NCBI

transcript from alignment at sc0000339:223696..233245+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019882 ID=TCONS_00019882|Name=TCONS_00019882|organism=Clytia hemisphaerica|type=transcript|length=9550bp|location=Sequence derived from alignment at sc0000339:223696..233245+ (Clytia hemisphaerica)
TGTAAGCATTGTATATATTGTTGCAATAGGAAAGAGAAAAGAAGTAAGTC
TAGCCTAGCCTAACTGTCAGCTGTCAGGGGGCGTTAAAAGAACATGAGAA
CTTATTTAAAGACAAAACACACAGATTTGCCAAGCTGActgttactctta
ggttccaaataaacgggggggggggggggggNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggggggggttgg
aaaattttctagattttaataaacggggggcctaattgccggggggttgg
aaattgtacttctgaaacccaaaaataaggctaaaatcaggctatttaga
gcaaaataaggggctttctctttgacagctcaaaatattcttagagatta
ttaaatgggggggtcctaataaggtccgggggagggggttggaaaatttt
cgaaaaattaacaagcaggggggccgtttatttggaacctaagagtacat
tcTCAGAAACTGTCGCacgttttctcaaaaattgtttcCTCCCCAATAAC
TATCACatcccaaaaaaacataacGTACAGTTAGTAGGTGGAACTTTGAT
ATTCAGGTATTACgattttacaagctttttagcaatttttgcctcgctag
cccAAATCCCACAACATCTTAACTTAAGATGTCTATCTGTCTGTATGTGT
TGTCCAACCAAACGCAccttcaggggggggggtaaacttgctcttgCTTG
CTTGCTTGGTGCTTGTTCGAGAGGGGTATATTTCCAAAAGAATATTATAT
CCTCCAACCCCTACATTCAAATTCTTTCTTGAAGAACCCAATGTACTAAC
GGAAAATTGTTTGGTTTATAAGGTTTTAATGGCTAGATCATTGGGGTTAA
ATCTTTGGCTGACTAATCTGAAATCATTAATCTTAAAACGTAATGCTTAT
TCTGATTCAGAGGAAATGTCTTTCGCATAGCACATGAAAAATTCTGCTAA
AAATTCTGCAACATCACTCAATTTAGTTGCATTGAATAATACCAACGAAA
TAGTGGATAAGTCCttgaaaatatctttgaaaaagtCTTAGAAAAGtaca
attttggaaatttcatattttattcTAATTTTAAAAAGGGCATTTTATTT
GGACAATCACAAATATAAACCCCCTAAAATCGCCTAACTTTTAGGGTTTA
TCCGTAGTCTGCACCCCTTTATTTTTTGGGGGCCTTTGGTATGGGGGGAG
TACCAAGTTTTGCGTGAAAAGCTGGGGGATTGGAACGTAGGGGGTATCAA
ATATGTAGCACCAAAACACAAAAGTGTATAATGTTAATAAACACTTGtta
tattgttatattatggAATTGTTGGCTTGTGCTTGTATACATTTTGTACT
CAGTGATCACTTTGGTAGTATACATAGAGTGAGTTTCCTTCAAAATTAAA
ACCCCTTGATGATAaatgtccttgaaaaagcaagtaaaattgttaatttc
aaggctgtTAATTATATGTCTACTtattttcatgtaataaggtaacccac
atttttatgaattttcacAAATATGCAGGTAAGTaaggacaaaaaaaaat
ttgcagaaGTGTTCTTTTTATCAGATGTTATTTCAGAAACAGCGAGTTAA
TTCTTTCttcagaacttttttcaatGAGGCATACTGATAAAGCAAAGGAT
TCGTTTTCCTAAGTACAGTTAACATTTTGAGAAGAGAATAAAGCTCAAAA
CTAATCTTCAATAATATGAACAATAACCAGTCTCTAAATTTTTTCACTTA
GCTTTAAAATAGGGTTAAAATTTTGAGGTTAACTTGATAATATTAGCCTT
TTTGAGGATAAAAAGCTTTTCCCAATTTTAAAGACATTAAACTCGCTTTC
TAAACTCGTTTTGAACAACATATTATTTTGAATGTAGCTTTTAACAAGTA
TTAagtttcttttggaaaaaaagataCTCAAGTTGAACTGACTACCATTT
TCTTTGCCATGCCCTACATACATACCCTAAACTCGGGCTTTTAGGGTATG
TCTGTATGTAAATTTCATGACTTCTAGCACCTTTTCAATAATTCTTGAGC
ATGAATTTTTCCAGTATCTGTTAATCAGTGAGTTTAAGTATTGATGAGAA
TTTGTACTTGTAATTTGTACAAACCTGTGGGAAACTCTTCAAGTTGTGTG
GAAGAACACTGGAAGGACGGGTTTTGAGTAACTCACTAAATATATTAGGT
ATTAAGGCATTTCATTGATCAACTCGGTAGTTGTTCCATAACGAGATACA
GACTTATTGAAGGCTTATTGCTTCTAAAACATTATAAttcacaatttaaa
aaatgcttttctGCGTTTAGAAGAGTTTTGGCCTGAAATTAAGGCATCCA
TCTTTTCTCTGAAAACAAAGGCATTCTTTGAATGCTTAAAACCTCTCCTT
ATTCTTGCTTTCTTATTGAAATTTGATCTTTATTATTattctgaaaagaa
aacaatgtCATCTCTCGTTTCTTGCACAAAATGTTTTCACTCTCGTTGTA
GCAcatatttaataaaaacaagaaaagatTTGGTATGGTTTGGCTTGCTT
GAGGGGAGAGGAATGTCAAACAAGACGCACTCCGAGTCTGACTCATCCCC
TGAAGAAAACAAGTTGTATATTTCACCAAGTTTCGTGCGTGATCGCGAGG
AGAAAGGATGGCGGTCGTACGCTACCTCCTCCGAACTGATGACTACTGCA
TCTGCCATCTTCAGTCAGATTAACAACCCTTCGCCTGATGATGATAATCA
AGTCAACTTTTTGTACGACTATTATGGAATGACTGATGAAACGAGACAAG
AACCTCCCTCTCCTGGTCATTCCCCCGTCACTTGGTAAGTCGTTGCATga
cttcctttttttctttttttcaatttctatctAGAATTTACGTAACAATA
CTGAATTTTGCGAGGACTTTCTTTCTTCTTAGTACGCAGTATATAATTAG
TTATGTGATCGTTGAGGCCAATGAGTGAAAGTTTCAtctcatttttttat
ttattcattcattcagcACTTCAAAAGAGATAGCAGAACATCATGGTGAG
GAAGGCTCATCTTCATCAAGAGAGCACGAATATGAGGAACACCACGCCTA
TCACCATCACCACCACCATATCAATGTCTCGGACAATGTGGATATACCCT
TAACCTCCAAAGATGTAAGTCGTTAGCTGTAATCTCCTCAcatatcaaac
aaactgtatgatGTCCTAAAGTTTGAATTAAGTTTAGTAAAAATTTGGTT
CAAACTTGTTTGGAAAATGGACAGCATTGGCTAGGCTATCGATCTGAGTT
TTCGGCGTTGCAGATCCTAAAGGCTATCAACTGGCAAGTACTTATGGAGC
TTTGATAAACTCGTCTCACTGTTGGCTTGTCTTCAATAACAATCATAGTC
ATATGCATTTTAAGATAACTTTGTTATGTTTTGTTTTAGAATGTGAGCCC
AGAACTGGAGCCAAGACATAGGTTTGTACTTACCActttagaaatttcaa
agaccTTCAAATAAGACTACATCAATAGACAGTCATTAATCAAAATGAAC
AgaattgaaagtttcaaaaacattttcttctttttttagttTCGCTGAAA
AACCAACATTATCCATCTTCTCTTCGCAAGCTTCTGAGGTAAAATAAAAG
TTCCTTTTTGAGGGAATAATTAATACTGGGAATTGCAATTCCCCACGCAT
CCTATTGAAATAAGGGTAACCAgtttaacttgtttttttttaacacaCAG
TCGTCAGCCAACAATCAAAGGAAGTCTTACAGCTCCATTCCACCTCTCAA
CAAGAACGAGAAAAGGTATTTATAACTCTTCTATTCATCTTATTAATAAA
CTTATCGCCATGCAGTTTTCCTCCTTTCAATTTCTCACTTTATTGAATCT
TATTATTCCTTGCAGCTCAAGCAGCCATGCGAATACTAGCTCGCCAGTCA
TCGAAACAGAAGTAAGTTATCTTTCTATGCCTCCATTTGTTAGTTAGTAA
AATTTGTTAGGTAATTGCTTTTAAATAAACCACTCCAATATTTTGTTATT
CGACCAGTCATGTTACTcattgtaaaatattttaaacgaCTACATTGTTT
TCTCTTCATTTAGTCTGCACCTAAGTCCAGTTTCAACCACTATTCTCGCC
CGATGCTTTACTATGAAGACAAGTATATatcactttctttcttttctcaC
CACTCATAATTTGTATGCATTCAACTGGTTTACAAACCTTTTGTGTTGTC
AGTAATCAATTGTCGTTTAGATACATGTACGTTTTGGAAGCACAAACCTC
ATTGGTGCAAAAGCGTGGTGAAGATTCTCTGACATACCTCAACAAAGGTA
AGCNGTAAAATAAAAGTTCCTTTTTGAGGGAATAATTAATACTGGGAATT
GCAATTCCCCACGCATCCTATTGAAATAAGGGTAACCAgtttaacttgtt
tttttttaacacaCAGTCGTCAGCCAACAATCAAAGGAAGTCTTACAGCT
CCATTCCACCTCTCAACAAGAACGAGAAAAGGTATTTATAACTCTTCTAN
GAATTCCATGCTTTGAAATAAGAGTTCTTCTTTCAGATAATTCTTTGGTA
CATGATGTTAGTCTGATTAATTTCCCCTCTTTTCTCGTATGACAGGTCAA
TTTTATTTCATCAGTTTTGAGGCTCAACATTCGAAAGCAGTCCGAGTTAA
GGTAAGTCGAGTGACATCAATAGCTCTTTTTACAAACTACGTCATTAACT
TCACACTCATATTAATGTTGCAGCACTTTATCCCAAATGATCCATTCTAT
TTACCAAAGTAAAGCTGTTGTCCATGATAACGTAATGTACGATGAATTAA
AGCCCACTTTAGTGACTTCACATCGAGGTTTTTTATAGCTAAATTTAGGG
CTAGACCCTTCTTTGCATTGAATACTTTGAAAATGGGCTCAATCATAGAt
tgtaatttgattttctgaaggttttcttgattttactcacTAAAGCAACT
GCGGTGACACGTTGATGGAgtgaaatgaaacattttacTACTTCCGTGGT
TTGGTAGCATGCCTTCTCTTCTCTATTTTATCTTGTTACTTTCAGTCCAT
CATCCACCTTGTATTTCGCAATGAGAAAGAACCCGATAATGAGCTGACTC
ATTGGAGGTACTGGTACAACCAGCAACCCAATCCCAACCAACGAGCTTTG
GACATCGATATGAAGTCCTGTCAAAACATTGAAGATGTGGAGGAGGTCGG
ATATAACGCTCTCGCTGTTTACTGGGACCCTAATGCAAAATCAAAGGTAT
CTATTTCCTACTTACAGCGCTCTATTTTCCATTTTCCGTCTGAAATGAAA
AACTGGGCTTTGACCACTGTACTTAAGCTCAAAATGTTTAGAATAAGCCA
TTTTTAAGATGTAGGTTAAAAGAGTTTGCTGAAAATGCTAACTCAAGGTG
AAACAGATTTATTTCTTTGATGGGTAAAGTCTTTGTGACTTTCCCTTCAA
TTTAATGGTGAGTTAGAATGAATTCATTGAGCAGATATGTTTGGATTAAA
ACagattgttctcatttttcacCATTTCAGGTCTCTCTGCGCATCAACTG
TTTGAGTACCGATTTTTCCGCCCAAAAAGGAGTGAAGGTATATCATCTCA
CTACTTACAAGATCTTGTTTGTACTCTTTAGATGATTTCGATTAGATAAC
TTCATGTTTGGTGCCATCAATTTATGgcacaatgctggacaaaaggttgt
agacaaatgaaatttcagtgaaaaatgatgagaaatagagcaaaatgact
cttcgatgtgtctgaaaggggatcgaagttaagaaaaatacttttgaagt
cgttgcattgcttttgaattgcttttgagggaaccgcaagcaaaaaatca
gcgttttgatactggtgtaagccagttaatNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNttggaaagcacccagaacctcttgggaacttgttt
ttgatcgatattgaagtattttgcaaatattgcagaagtctacaaacctt
ttgtccagcattgcaGAATTTTTTAGAGCACAATAtttgtatctgcattt
tcttttGTAGACATGACACGCTATACGAAGCGACTTTTTGTTTCTTCTAA
AATGTAATCTAGGGCATTCCATTACACTTACAAATTGACACTTTCGAAGA
TTTTTCTGACGCTACCATCCCCACACATCGAGCATTCTGTCAAATCAAAG
TGTTCAGAGACAAGGTAACTAGAAAAATCGCTTTCTTCGCTTGAATGCTG
GAGTTTCCAGTTTGTTGTTTGAATACTTCGAAGACATTTAACCAAGACTA
CTGTTTAATCTGGGAAATAGTAAAACGTCGACTTGCGTTtgaagttgctt
ataaaaagttcGTATCCTCGATGGAAGCAAAACTAACGTGTTTCttggtt
tttgttattttatagAAAGTACAGGCAAGTAAGGAAACTAAAAGTCAAAC
CTGTTTAAGATCTCCTGTAAAACGAGTTCATTTACTATTCCTTGTTTTCT
TCGTGTATAACGAGACGACATCGAGTATAAAGCTTTTCCATTCTTCCCTA
ATAGGGTGCTGAAAGGAAGAACAAAGATGAAGCGAAAACTGTCAACAAAA
GAGTGGTCAAATATTTGAAAGGATCAGGTTTGTTCTCTTACTTCTAATTC
ATCTTCAGAGAAACTGATATCAAGCACCaacaatgaatttttttcttcat
atctGTTCATGTTAGGGGTGAGGGCCAGCACATTTACATCGGTGTGTATT
GCCCAGTTTCATGGAAGCTATTgattcaatttaatttacttttcttCGTA
GACAACGCACAAGCAGACATGTTGCACGTTTTTCAGATGCAGAACAAAGT
GACATTTCTTTATCCTACAACCAACATCCTGTCCAAGTCCGTTGTCTTCG
TCCCTCCTAAAGAACGTGAAAAAGAACGAACGGTATCATGAATTATTTTC
TTaatcggtttgaaaaatccatcGAGCTTTTCTCTTTATGTACTGATTCC
ACGCCCATAAAAGAGCTTTGTTATTGGTTACAAAATAGTTTGAAGAATGT
TAAGAGCGTTTCCTAGTTAAGCTTTAAGATTGATGATTGATCAGTAAATC
ATCGTATCACATTGCACTTGCCTCTTCATTAGTTTACAAAATAACCCTTG
CGCTTGTTGTGTTCTTCTAGAGATCAACAGACGGAGCAACTTCGATTAAT
ACTGGTGGATTCTTCTCGCAGTTAAGGTAAAGCAATTGATGATGGGTTTT
TTCATGAGTTTCTTTGTAAACAATTTGTAGGGACGGTTATCGCTAACATA
GTGACTTAAGTATTCCTTTTCGTGTCAAATTTTCAGAGAGCGAGAAAACA
AACGAGGATTCAATGCGGCCCTTTCAAATGCaaaggtaatttttttactt
tatgtTTCATGTTAAttagaaatttacaaaaatctttCATGTTATATTGA
TGTCATAGAGGACTTACTTGCAGAGTTTTGTATATTGTGTTTCTCTTTAG
GACGATTTGGAACAACTAGATGTTCTTCCTCGGTCAAAGAAAGCCAACTT
TTGTATGAAGAAATCACCAGGTAATGATTTGATGAATGTTCTCGTCCTCT
CCTTGCTATTCTCAAACATTTGACAGTTCGTTAACTCcatcaaaaaacct
tttttagccGTCACTATATATGTAcgcaaagaagaagaaaaagcttACAA
TGCTTTGATGTTAGAAGTTGCAACTCTTGACTCGCTTAAAAATGCTGTAA
GTTAAATCTTTTGTTCCCTGATATTTCCTTCCAAGTCGTTGTTAAGTGAT
CGAAGTATTAGTGAGCGTGTCACTCTTACTTGTCTGGTAGGCTTTAATGT
GTtacagtagactcccggttattcgaagctccAAGGGGTTTGagaattta
cttcgaataaccgggagttcAAATAACTGCAAAATTCATTTTCCCACCAG
ATTCTAAAATTAACCTTAATTGGAGGGGCTTTTCTGAAGTAATTGAGGCA
TTGCAGTTCAGTTGAGCGtaataaacacaaagaaattgcTTGAATAGCGA
TATATAGCCCTGAATATTGAAACctgatttttaaaggaaaaaaattattt
caatcgCAGATCTCCCaataagaaaaattcgaataaccGAGGGTGATTTA
GACTAGAATGTACCCCAAGGGGAAAAGAAATcgcttcgaataactgaaag
ttCAAATAACTGAAGTTCGAATAACCGAAAGTGTTTTTGCCTGGGTTGAG
TAAGCAGATCCAAGGGGAACGCCATCTCACTTCGAATAACCAAATGTGCA
ggttcgaataaccgggagtctactgtaTTCGTCAGTGAGACGGAAGTGGC
AACTCATGTGGCTCATTCATTCTAAATAAACAATTTCTCGCGTTTTTCAT
TTAAAGATTTCAGTCAAATACAATGTTCCAGAAGAGATGATCAAACAGGT
CTTTAAGAAGACCAAAAAAGGGTACGGcctgtttttcaataatttcttca
aTTACTTGTTTCAcgatgtttttttgtttgtttttttatgttaACTGTGA
TGTTTCaaacttcaaaattttgtttcattttattgtGTGATGTTTTACTT
AATGACCTTGGGCCTTCATGAAGAAACAATTTTGAGTTCTTCTTCGGTCA
GAATCCTACTAAAACTgtttgaagaaaagaaaatcataaaaagtaatgca
ATTTTGAACATTTGTTCTTTTCCAGGATTTTGGTGTTTGTTGACGATCAG
TTGGTGGAGCAATTTGTGGATGAAGATGACTTCCTCATTTCCATCGACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011188XLOC_011188Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019882-exon-sc0000339-1491911889:223696..223738TCONS_00019882-exon-sc0000339-1491911889:223696..223738Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:223696..223738TCONS_00019882-exon-sc0000339-1510915933:223696..223738Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:223696..223738TCONS_00019882-exon-sc0000339-1575043694:223696..223738Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:226497..226829TCONS_00019882-exon-sc0000339-1491911889:226497..226829Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:226497..226829TCONS_00019882-exon-sc0000339-1510915933:226497..226829Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:226497..226829TCONS_00019882-exon-sc0000339-1575043694:226497..226829Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:227012..227159TCONS_00019882-exon-sc0000339-1491911889:227012..227159Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:227012..227159TCONS_00019882-exon-sc0000339-1510915933:227012..227159Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:227012..227159TCONS_00019882-exon-sc0000339-1575043694:227012..227159Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:227435..227466TCONS_00019882-exon-sc0000339-1491911889:227435..227466Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:227435..227466TCONS_00019882-exon-sc0000339-1510915933:227435..227466Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:227435..227466TCONS_00019882-exon-sc0000339-1575043694:227435..227466Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:227585..227633TCONS_00019882-exon-sc0000339-1491911889:227585..227633Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:227585..227633TCONS_00019882-exon-sc0000339-1510915933:227585..227633Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:227585..227633TCONS_00019882-exon-sc0000339-1575043694:227585..227633Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:227746..227810TCONS_00019882-exon-sc0000339-1491911889:227746..227810Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:227746..227810TCONS_00019882-exon-sc0000339-1510915933:227746..227810Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:227746..227810TCONS_00019882-exon-sc0000339-1575043694:227746..227810Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:227911..227956TCONS_00019882-exon-sc0000339-1491911889:227911..227956Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:227911..227956TCONS_00019882-exon-sc0000339-1510915933:227911..227956Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:227911..227956TCONS_00019882-exon-sc0000339-1575043694:227911..227956Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:228109..228167TCONS_00019882-exon-sc0000339-1491911889:228109..228167Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:228109..228167TCONS_00019882-exon-sc0000339-1510915933:228109..228167Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:228109..228167TCONS_00019882-exon-sc0000339-1575043694:228109..228167Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:228248..228342TCONS_00019882-exon-sc0000339-1491911889:228248..228342Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:228248..228342TCONS_00019882-exon-sc0000339-1510915933:228248..228342Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:228248..228342TCONS_00019882-exon-sc0000339-1575043694:228248..228342Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:228641..228696TCONS_00019882-exon-sc0000339-1491911889:228641..228696Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:228641..228696TCONS_00019882-exon-sc0000339-1510915933:228641..228696Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:228641..228696TCONS_00019882-exon-sc0000339-1575043694:228641..228696Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:229091..229291TCONS_00019882-exon-sc0000339-1491911889:229091..229291Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:229091..229291TCONS_00019882-exon-sc0000339-1510915933:229091..229291Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:229091..229291TCONS_00019882-exon-sc0000339-1575043694:229091..229291Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:229576..229632TCONS_00019882-exon-sc0000339-1491911889:229576..229632Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:229576..229632TCONS_00019882-exon-sc0000339-1510915933:229576..229632Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:229576..229632TCONS_00019882-exon-sc0000339-1575043694:229576..229632Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:230558..230659TCONS_00019882-exon-sc0000339-1491911889:230558..230659Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:230558..230659TCONS_00019882-exon-sc0000339-1510915933:230558..230659Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:230558..230659TCONS_00019882-exon-sc0000339-1575043694:230558..230659Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:231000..231072TCONS_00019882-exon-sc0000339-1491911889:231000..231072Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:231000..231072TCONS_00019882-exon-sc0000339-1510915933:231000..231072Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:231000..231072TCONS_00019882-exon-sc0000339-1575043694:231000..231072Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:231247..231377TCONS_00019882-exon-sc0000339-1491911889:231247..231377Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:231247..231377TCONS_00019882-exon-sc0000339-1510915933:231247..231377Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:231247..231377TCONS_00019882-exon-sc0000339-1575043694:231247..231377Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:231616..231671TCONS_00019882-exon-sc0000339-1491911889:231616..231671Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:231616..231671TCONS_00019882-exon-sc0000339-1510915933:231616..231671Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:231616..231671TCONS_00019882-exon-sc0000339-1575043694:231616..231671Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:231782..231830TCONS_00019882-exon-sc0000339-1491911889:231782..231830Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:231782..231830TCONS_00019882-exon-sc0000339-1510915933:231782..231830Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:231782..231830TCONS_00019882-exon-sc0000339-1575043694:231782..231830Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:231946..232015TCONS_00019882-exon-sc0000339-1491911889:231946..232015Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:231946..232015TCONS_00019882-exon-sc0000339-1510915933:231946..232015Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:231946..232015TCONS_00019882-exon-sc0000339-1575043694:231946..232015Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:232103..232191TCONS_00019882-exon-sc0000339-1491911889:232103..232191Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:232103..232191TCONS_00019882-exon-sc0000339-1510915933:232103..232191Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:232103..232191TCONS_00019882-exon-sc0000339-1575043694:232103..232191Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:232852..232916TCONS_00019882-exon-sc0000339-1491911889:232852..232916Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:232852..232916TCONS_00019882-exon-sc0000339-1510915933:232852..232916Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:232852..232916TCONS_00019882-exon-sc0000339-1575043694:232852..232916Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1491911889:233171..233245TCONS_00019882-exon-sc0000339-1491911889:233171..233245Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1510915933:233171..233245TCONS_00019882-exon-sc0000339-1510915933:233171..233245Clytia hemisphaericaexon
TCONS_00019882-exon-sc0000339-1575043694:233171..233245TCONS_00019882-exon-sc0000339-1575043694:233171..233245Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:223696..233245 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.766	15.2128	4.65676	5.69932	30.1017	27.7182	36.0836	35.8782	28.6046	33.3198	28.2724	32.8621	39.6183	47.3673	42.638	50.8	30.8943	30.5113	20.5229	23.6095	19.3241	22.1977	19.3303	20.8387	15.725	16.3233	9.39806	9.89198	17.4598	17.7339
Blast
[Close]
BLAST of TCONS_00019882 vs. Swiss-Prot (Human)
Match: GRHL1 (Grainyhead-like protein 1 homolog OS=Homo sapiens GN=GRHL1 PE=1 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 2.721e-72
Identity = 149/375 (39.73%), Postives = 223/375 (59.47%), Query Frame = 3 
Query:  795 YMYVLEAQTSLVQKRGEDSLTYLNKGQFYFISF------EAQHSKAVRVKSIIHLVFRNEKEPDNELTHWRYWYNQQPNPNQRALDI-DMK-SCQNIEDVEEVGYNALAVYWDPNAKSKVSLRINCLSTDFSAQKGVKGIPLHLQIDTFEDFSDATIPTHRAFCQIKVFRDKGAERKNKDEAKTVNKRVVKYLKGSDNAQADMLHVFQMQNKVTFLYPTTNILSKSVVFVPPKE-REKERTRSTDGATSINTGGFFSQLRERENKRGFNAALSNAKDDLEQLDVLPRSKKANFCMKKSPAVTIYVRKEEEKAYNALMLEVATLDSLKNAISVKYNVPEEMIKQVFKKTKKGILVFVDDQLVEQFVDEDDFLISID 1892
            + Y LEA  SL QK G+ ++TYLNKGQFY I+       E  H    +V+S+I +VF  +K  +++L HW+YW+++Q    QR +DI D K S   I ++EE+ YNA++  WD N ++KV + +NCLSTDFS+QKGVKG+PL++Q+DT+   + +  P HRA+CQIKVF DKGAERK +DE +  +KR V       + +  +L   +  + +T   P  ++ ++ V+F+P       +R        S    G  S L     KRG        +DD     V P +K A   +++   V +YVRKE E+ ++ALML+  +L  L  AIS KY+VP + I ++FKK KKGILV +DD +V+ + +ED F + I+
Sbjct:  252 FEYTLEASKSLRQKPGDSTMTYLNKGQFYPITLKEVSSSEGIHHPISKVRSVIMVVFAEDKSREDQLRHWKYWHSRQHTAKQRCIDIADYKESFNTISNIEEIAYNAISFTWDINDEAKVFISVNCLSTDFSSQKGVKGLPLNIQVDTYSYNNRSNKPVHRAYCQIKVFCDKGAERKIRDEERKQSKRKVS------DVKVPLLPSHKRMD-ITVFKPFIDLDTQPVLFIPDVHFANLQRGTHVLPIASEELEGEGSVL-----KRG----PYGTEDDFA---VPPSTKLAR--IEEPKRVLLYVRKESEEVFDALMLKTPSLKGLMEAISDKYDVPHDKIGKIFKKCKKGILVNMDDNIVKHYSNEDTFQLQIE 605
The following BLAST results are available for this feature:
BLAST of TCONS_00019882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRHL12.721e-7239.73Grainyhead-like protein 1 homolog OS=Homo sapiens ... [more]
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