TCONS_00019881 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019881
Unique NameTCONS_00019881
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019881 ID=TCONS_00019881|Name=TCONS_00019881|organism=Clytia hemisphaerica|type=transcript|length=2488bp
tattgcagatttcgatataaaaaTTGCATGGGGAATACCTTCTGTCAATG
TGTATTGTGTGTCAACTATGTAAGCATTGTATATATTGTTGCAATAGGAA
AGAGAAAAGAACAcatatttaataaaaacaagaaaagatTTGGTATGGTT
TGGCTTGCTTGAGGGGAGAGGAATGTCAAACAAGACGCACTCCGAGTCTG
ACTCATCCCCTGAAGAAAACAAGTTGTATATTTCACCAAGTTTCGTGCGT
GATCGCGAGGAGAAAGGATGGCGGTCGTACGCTACCTCCTCCGAACTGAT
GACTACTGCATCTGCCATCTTCAGTCAGATTAACAACCCTTCGCCTGATG
ATGATAATCAAGTCAACTTTTTGTACGACTATTATGGAATGACTGATGAA
ACGAGACAAGAACCTCCCTCTCCTGGTCATTCCCCCGTCACTTGcACTTC
AAAAGAGATAGCAGAACATCATGGTGAGGAAGGCTCATCTTCATCAAGAG
AGCACGAATATGAGGAACACCACGCCTATCACCATCACCACCACCATATC
AATGTCTCGGACAATGTGGATATACCCTTAACCTCCAAAGATAATGTGAG
CCCAGAACTGGAGCCAAGACATAGttTCGCTGAAAAACCAACATTATCCA
TCTTCTCTTCGCAAGCTTCTGAGTCGTCAGCCAACAATCAAAGGAAGTCT
TACAGCTCCATTCCACCTCTCAACAAGAACGAGAAAAGCTCAAGCAGCCA
TGCGAATACTAGCTCGCCAGTCATCGAAACAGAATCTGCACCTAAGTCCA
GTTTCAACCACTATTCTCGCCCGATGCTTTACTATGAAGACAATAATCAA
TTGTCGTTTAGATACATGTACGTTTTGGAAGCACAAACCTCATTGGTGCA
AAAGCGTGGTGAAGATTCTCTGACATACCTCAACAAAGGTCAATTTTATT
TCATCAGTTTTGAGGCTCAACATTCGAAAGCAGTCCGAGTTAAGTCCATC
ATCCACCTTGTATTTCGCAATGAGAAAGAACCCGATAATGAGCTGACTCA
TTGGAGGTACTGGTACAACCAGCAACCCAATCCCAACCAACGAGCTTTGG
ACATCGATATGAAGTCCTGTCAAAACATTGAAGATGTGGAGGAGGTCGGA
TATAACGCTCTCGCTGTTTACTGGGACCCTAATGCAAAATCAAAGGTCTC
TCTGCGCATCAACTGTTTGAGTACCGATTTTTCCGCCCAAAAAGGAGTGA
AGGGCATTCCATTACACTTACAAATTGACACTTTCGAAGATTTTTCTGAC
GCTACCATCCCCACACATCGAGCATTCTGTCAAATCAAAGTGTTCAGAGA
CAAGGGTGCTGAAAGGAAGAACAAAGATGAAGCGAAAACTGTCAACAAAA
GAGTGGTCAAATATTTGAAAGGATCAGACAACGCACAAGCAGACATGTTG
CACGTTTTTCAGATGCAGAACAAAGTGACATTTCTTTATCCTACAACCAA
CATCCTGTCCAAGTCCGTTGTCTTCGTCCCTCCTAAAGAACGTGAAAAAG
AACGAACGAGATCAACAGACGGAGCAACTTCTATTAATACTGGTGGATTC
TTCTCGCAGTTAAGAGAGCGAGAAAACAAACGAGGATTCAATGCGGCCCT
TTCAAATGCaaagGACGATTTGGAACAACTAGATGTTCTTCCTCGGTCAA
AGAAAGCCAACTTTTGTATGAAGAAATCACCAGccgtcACAATATATGTA
cgcaaagaagaagaaaaagcttACAATGCTTTGATGTTAGAAGTTGCAAC
TCTTGACTCGCTTAAAAATGCTATTTCAGTCAAATATAATGTTCCAGAAG
AGATGATCAAACAGGTCTTTAAGAAGACCAAAAAAGGGATTTTGGTGTTT
GTTGACGATCAGTTGGTGGAGCAATTTGTGGATGAAGATGACTTCCTCAT
TTCCATCGACTTCGATAATCAAATGGGTCATTTTGAAGTGGTCTTCAATT
GCTGATTTAATTTAATTAGTAGGCTTTTCGAGTTGGTAAATCAGTCGAAA
AATTTCGCTCATTCCACTACttcaaaatatctttccaacaggtTCCTCGA
CAATAAGAGTTTTCAttgctttttatttcaaaatttgtttcgaccgtttt
ttttacttttgcagACTTTTTGTGTTTTAGTGGCAATCTTTTTTACTGGT
AGTATGCATGCATTTCAAAGTAATatttaaaatttacttttttattgact
ttagcttttctaaaatatttttcagggtAGAAAGGCTAGAATTAATTCTA
CTCCAGAAAGCAATCCCAATTGCTTCTTCTCCCCCAGAAAATATTGTTTT
TTATTTTGATAAACTTTTTGGAAGTCTTTTTTATGAGAAGGTGTTTATTA
TATTGTAACAGAGAAAAAGAGATAACTCATAACATTTGTACATAGAAAGA
TGATTTGTTTTTATCAAATATTATATCCACCTCAATAT
Run BLAST on NCBI

transcript from alignment at sc0000339:223628..235497+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019881 ID=TCONS_00019881|Name=TCONS_00019881|organism=Clytia hemisphaerica|type=transcript|length=11870bp|location=Sequence derived from alignment at sc0000339:223628..235497+ (Clytia hemisphaerica)
tattgcagatttcgatataaaaaTTGCATGGGGAATACCTTCTGTCAATG
TGTATTGTGTGTCAACTATGTAAGCATTGTATATATTGTTGCAATAGGAA
AGAGAAAAGAAGTAAGTCTAGCCTAGCCTAACTGTCAGCTGTCAGGGGGC
GTTAAAAGAACATGAGAACTTATTTAAAGACAAAACACACAGATTTGCCA
AGCTGActgttactcttaggttccaaataaacgggggggggggggggggN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNgggggggggttggaaaattttctagattttaataaacggggggcc
taattgccggggggttggaaattgtacttctgaaacccaaaaataaggct
aaaatcaggctatttagagcaaaataaggggctttctctttgacagctca
aaatattcttagagattattaaatgggggggtcctaataaggtccggggg
agggggttggaaaattttcgaaaaattaacaagcaggggggccgtttatt
tggaacctaagagtacattcTCAGAAACTGTCGCacgttttctcaaaaat
tgtttcCTCCCCAATAACTATCACatcccaaaaaaacataacGTACAGTT
AGTAGGTGGAACTTTGATATTCAGGTATTACgattttacaagctttttag
caatttttgcctcgctagcccAAATCCCACAACATCTTAACTTAAGATGT
CTATCTGTCTGTATGTGTTGTCCAACCAAACGCAccttcagggggggggg
taaacttgctcttgCTTGCTTGCTTGGTGCTTGTTCGAGAGGGGTATATT
TCCAAAAGAATATTATATCCTCCAACCCCTACATTCAAATTCTTTCTTGA
AGAACCCAATGTACTAACGGAAAATTGTTTGGTTTATAAGGTTTTAATGG
CTAGATCATTGGGGTTAAATCTTTGGCTGACTAATCTGAAATCATTAATC
TTAAAACGTAATGCTTATTCTGATTCAGAGGAAATGTCTTTCGCATAGCA
CATGAAAAATTCTGCTAAAAATTCTGCAACATCACTCAATTTAGTTGCAT
TGAATAATACCAACGAAATAGTGGATAAGTCCttgaaaatatctttgaaa
aagtCTTAGAAAAGtacaattttggaaatttcatattttattcTAATTTT
AAAAAGGGCATTTTATTTGGACAATCACAAATATAAACCCCCTAAAATCG
CCTAACTTTTAGGGTTTATCCGTAGTCTGCACCCCTTTATTTTTTGGGGG
CCTTTGGTATGGGGGGAGTACCAAGTTTTGCGTGAAAAGCTGGGGGATTG
GAACGTAGGGGGTATCAAATATGTAGCACCAAAACACAAAAGTGTATAAT
GTTAATAAACACTTGttatattgttatattatggAATTGTTGGCTTGTGC
TTGTATACATTTTGTACTCAGTGATCACTTTGGTAGTATACATAGAGTGA
GTTTCCTTCAAAATTAAAACCCCTTGATGATAaatgtccttgaaaaagca
agtaaaattgttaatttcaaggctgtTAATTATATGTCTACTtattttca
tgtaataaggtaacccacatttttatgaattttcacAAATATGCAGGTAA
GTaaggacaaaaaaaaatttgcagaaGTGTTCTTTTTATCAGATGTTATT
TCAGAAACAGCGAGTTAATTCTTTCttcagaacttttttcaatGAGGCAT
ACTGATAAAGCAAAGGATTCGTTTTCCTAAGTACAGTTAACATTTTGAGA
AGAGAATAAAGCTCAAAACTAATCTTCAATAATATGAACAATAACCAGTC
TCTAAATTTTTTCACTTAGCTTTAAAATAGGGTTAAAATTTTGAGGTTAA
CTTGATAATATTAGCCTTTTTGAGGATAAAAAGCTTTTCCCAATTTTAAA
GACATTAAACTCGCTTTCTAAACTCGTTTTGAACAACATATTATTTTGAA
TGTAGCTTTTAACAAGTATTAagtttcttttggaaaaaaagataCTCAAG
TTGAACTGACTACCATTTTCTTTGCCATGCCCTACATACATACCCTAAAC
TCGGGCTTTTAGGGTATGTCTGTATGTAAATTTCATGACTTCTAGCACCT
TTTCAATAATTCTTGAGCATGAATTTTTCCAGTATCTGTTAATCAGTGAG
TTTAAGTATTGATGAGAATTTGTACTTGTAATTTGTACAAACCTGTGGGA
AACTCTTCAAGTTGTGTGGAAGAACACTGGAAGGACGGGTTTTGAGTAAC
TCACTAAATATATTAGGTATTAAGGCATTTCATTGATCAACTCGGTAGTT
GTTCCATAACGAGATACAGACTTATTGAAGGCTTATTGCTTCTAAAACAT
TATAAttcacaatttaaaaaatgcttttctGCGTTTAGAAGAGTTTTGGC
CTGAAATTAAGGCATCCATCTTTTCTCTGAAAACAAAGGCATTCTTTGAA
TGCTTAAAACCTCTCCTTATTCTTGCTTTCTTATTGAAATTTGATCTTTA
TTATTattctgaaaagaaaacaatgtCATCTCTCGTTTCTTGCACAAAAT
GTTTTCACTCTCGTTGTAGCAcatatttaataaaaacaagaaaagatTTG
GTATGGTTTGGCTTGCTTGAGGGGAGAGGAATGTCAAACAAGACGCACTC
CGAGTCTGACTCATCCCCTGAAGAAAACAAGTTGTATATTTCACCAAGTT
TCGTGCGTGATCGCGAGGAGAAAGGATGGCGGTCGTACGCTACCTCCTCC
GAACTGATGACTACTGCATCTGCCATCTTCAGTCAGATTAACAACCCTTC
GCCTGATGATGATAATCAAGTCAACTTTTTGTACGACTATTATGGAATGA
CTGATGAAACGAGACAAGAACCTCCCTCTCCTGGTCATTCCCCCGTCACT
TGGTAAGTCGTTGCATgacttcctttttttctttttttcaatttctatct
AGAATTTACGTAACAATACTGAATTTTGCGAGGACTTTCTTTCTTCTTAG
TACGCAGTATATAATTAGTTATGTGATCGTTGAGGCCAATGAGTGAAAGT
TTCAtctcatttttttatttattcattcattcagcACTTCAAAAGAGATA
GCAGAACATCATGGTGAGGAAGGCTCATCTTCATCAAGAGAGCACGAATA
TGAGGAACACCACGCCTATCACCATCACCACCACCATATCAATGTCTCGG
ACAATGTGGATATACCCTTAACCTCCAAAGATGTAAGTCGTTAGCTGTAA
TCTCCTCAcatatcaaacaaactgtatgatGTCCTAAAGTTTGAATTAAG
TTTAGTAAAAATTTGGTTCAAACTTGTTTGGAAAATGGACAGCATTGGCT
AGGCTATCGATCTGAGTTTTCGGCGTTGCAGATCCTAAAGGCTATCAACT
GGCAAGTACTTATGGAGCTTTGATAAACTCGTCTCACTGTTGGCTTGTCT
TCAATAACAATCATAGTCATATGCATTTTAAGATAACTTTGTTATGTTTT
GTTTTAGAATGTGAGCCCAGAACTGGAGCCAAGACATAGGTTTGTACTTA
CCActttagaaatttcaaagaccTTCAAATAAGACTACATCAATAGACAG
TCATTAATCAAAATGAACAgaattgaaagtttcaaaaacattttcttctt
tttttagttTCGCTGAAAAACCAACATTATCCATCTTCTCTTCGCAAGCT
TCTGAGGTAAAATAAAAGTTCCTTTTTGAGGGAATAATTAATACTGGGAA
TTGCAATTCCCCACGCATCCTATTGAAATAAGGGTAACCAgtttaacttg
tttttttttaacacaCAGTCGTCAGCCAACAATCAAAGGAAGTCTTACAG
CTCCATTCCACCTCTCAACAAGAACGAGAAAAGGTATTTATAACTCTTCT
ATTCATCTTATTAATAAACTTATCGCCATGCAGTTTTCCTCCTTTCAATT
TCTCACTTTATTGAATCTTATTATTCCTTGCAGCTCAAGCAGCCATGCGA
ATACTAGCTCGCCAGTCATCGAAACAGAAGTAAGTTATCTTTCTATGCCT
CCATTTGTTAGTTAGTAAAATTTGTTAGGTAATTGCTTTTAAATAAACCA
CTCCAATATTTTGTTATTCGACCAGTCATGTTACTcattgtaaaatattt
taaacgaCTACATTGTTTTCTCTTCATTTAGTCTGCACCTAAGTCCAGTT
TCAACCACTATTCTCGCCCGATGCTTTACTATGAAGACAAGTATATatca
ctttctttcttttctcaCCACTCATAATTTGTATGCATTCAACTGGTTTA
CAAACCTTTTGTGTTGTCAGTAATCAATTGTCGTTTAGATACATGTACGT
TTTGGAAGCACAAACCTCATTGGTGCAAAAGCGTGGTGAAGATTCTCTGA
CATACCTCAACAAAGGTAAGCNGTAAAATAAAAGTTCCTTTTTGAGGGAA
TAATTAATACTGGGAATTGCAATTCCCCACGCATCCTATTGAAATAAGGG
TAACCAgtttaacttgtttttttttaacacaCAGTCGTCAGCCAACAATC
AAAGGAAGTCTTACAGCTCCATTCCACCTCTCAACAAGAACGAGAAAAGG
TATTTATAACTCTTCTANGAATTCCATGCTTTGAAATAAGAGTTCTTCTT
TCAGATAATTCTTTGGTACATGATGTTAGTCTGATTAATTTCCCCTCTTT
TCTCGTATGACAGGTCAATTTTATTTCATCAGTTTTGAGGCTCAACATTC
GAAAGCAGTCCGAGTTAAGGTAAGTCGAGTGACATCAATAGCTCTTTTTA
CAAACTACGTCATTAACTTCACACTCATATTAATGTTGCAGCACTTTATC
CCAAATGATCCATTCTATTTACCAAAGTAAAGCTGTTGTCCATGATAACG
TAATGTACGATGAATTAAAGCCCACTTTAGTGACTTCACATCGAGGTTTT
TTATAGCTAAATTTAGGGCTAGACCCTTCTTTGCATTGAATACTTTGAAA
ATGGGCTCAATCATAGAttgtaatttgattttctgaaggttttcttgatt
ttactcacTAAAGCAACTGCGGTGACACGTTGATGGAgtgaaatgaaaca
ttttacTACTTCCGTGGTTTGGTAGCATGCCTTCTCTTCTCTATTTTATC
TTGTTACTTTCAGTCCATCATCCACCTTGTATTTCGCAATGAGAAAGAAC
CCGATAATGAGCTGACTCATTGGAGGTACTGGTACAACCAGCAACCCAAT
CCCAACCAACGAGCTTTGGACATCGATATGAAGTCCTGTCAAAACATTGA
AGATGTGGAGGAGGTCGGATATAACGCTCTCGCTGTTTACTGGGACCCTA
ATGCAAAATCAAAGGTATCTATTTCCTACTTACAGCGCTCTATTTTCCAT
TTTCCGTCTGAAATGAAAAACTGGGCTTTGACCACTGTACTTAAGCTCAA
AATGTTTAGAATAAGCCATTTTTAAGATGTAGGTTAAAAGAGTTTGCTGA
AAATGCTAACTCAAGGTGAAACAGATTTATTTCTTTGATGGGTAAAGTCT
TTGTGACTTTCCCTTCAATTTAATGGTGAGTTAGAATGAATTCATTGAGC
AGATATGTTTGGATTAAAACagattgttctcatttttcacCATTTCAGGT
CTCTCTGCGCATCAACTGTTTGAGTACCGATTTTTCCGCCCAAAAAGGAG
TGAAGGTATATCATCTCACTACTTACAAGATCTTGTTTGTACTCTTTAGA
TGATTTCGATTAGATAACTTCATGTTTGGTGCCATCAATTTATGgcacaa
tgctggacaaaaggttgtagacaaatgaaatttcagtgaaaaatgatgag
aaatagagcaaaatgactcttcgatgtgtctgaaaggggatcgaagttaa
gaaaaatacttttgaagtcgttgcattgcttttgaattgcttttgaggga
accgcaagcaaaaaatcagcgttttgatactggtgtaagccagttaatNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttggaaagcacccagaa
cctcttgggaacttgtttttgatcgatattgaagtattttgcaaatattg
cagaagtctacaaaccttttgtccagcattgcaGAATTTTTTAGAGCACA
ATAtttgtatctgcattttcttttGTAGACATGACACGCTATACGAAGCG
ACTTTTTGTTTCTTCTAAAATGTAATCTAGGGCATTCCATTACACTTACA
AATTGACACTTTCGAAGATTTTTCTGACGCTACCATCCCCACACATCGAG
CATTCTGTCAAATCAAAGTGTTCAGAGACAAGGTAACTAGAAAAATCGCT
TTCTTCGCTTGAATGCTGGAGTTTCCAGTTTGTTGTTTGAATACTTCGAA
GACATTTAACCAAGACTACTGTTTAATCTGGGAAATAGTAAAACGTCGAC
TTGCGTTtgaagttgcttataaaaagttcGTATCCTCGATGGAAGCAAAA
CTAACGTGTTTCttggtttttgttattttatagAAAGTACAGGCAAGTAA
GGAAACTAAAAGTCAAACCTGTTTAAGATCTCCTGTAAAACGAGTTCATT
TACTATTCCTTGTTTTCTTCGTGTATAACGAGACGACATCGAGTATAAAG
CTTTTCCATTCTTCCCTAATAGGGTGCTGAAAGGAAGAACAAAGATGAAG
CGAAAACTGTCAACAAAAGAGTGGTCAAATATTTGAAAGGATCAGGTTTG
TTCTCTTACTTCTAATTCATCTTCAGAGAAACTGATATCAAGCACCaaca
atgaatttttttcttcatatctGTTCATGTTAGGGGTGAGGGCCAGCACA
TTTACATCGGTGTGTATTGCCCAGTTTCATGGAAGCTATTgattcaattt
aatttacttttcttCGTAGACAACGCACAAGCAGACATGTTGCACGTTTT
TCAGATGCAGAACAAAGTGACATTTCTTTATCCTACAACCAACATCCTGT
CCAAGTCCGTTGTCTTCGTCCCTCCTAAAGAACGTGAAAAAGAACGAACG
GTATCATGAATTATTTTCTTaatcggtttgaaaaatccatcGAGCTTTTC
TCTTTATGTACTGATTCCACGCCCATAAAAGAGCTTTGTTATTGGTTACA
AAATAGTTTGAAGAATGTTAAGAGCGTTTCCTAGTTAAGCTTTAAGATTG
ATGATTGATCAGTAAATCATCGTATCACATTGCACTTGCCTCTTCATTAG
TTTACAAAATAACCCTTGCGCTTGTTGTGTTCTTCTAGAGATCAACAGAC
GGAGCAACTTCGATTAATACTGGTGGATTCTTCTCGCAGTTAAGGTAAAG
CAATTGATGATGGGTTTTTTCATGAGTTTCTTTGTAAACAATTTGTAGGG
ACGGTTATCGCTAACATAGTGACTTAAGTATTCCTTTTCGTGTCAAATTT
TCAGAGAGCGAGAAAACAAACGAGGATTCAATGCGGCCCTTTCAAATGCa
aaggtaatttttttactttatgtTTCATGTTAAttagaaatttacaaaaa
tctttCATGTTATATTGATGTCATAGAGGACTTACTTGCAGAGTTTTGTA
TATTGTGTTTCTCTTTAGGACGATTTGGAACAACTAGATGTTCTTCCTCG
GTCAAAGAAAGCCAACTTTTGTATGAAGAAATCACCAGGTAATGATTTGA
TGAATGTTCTCGTCCTCTCCTTGCTATTCTCAAACATTTGACAGTTCGTT
AACTCcatcaaaaaaccttttttagccGTCACTATATATGTAcgcaaaga
agaagaaaaagcttACAATGCTTTGATGTTAGAAGTTGCAACTCTTGACT
CGCTTAAAAATGCTGTAAGTTAAATCTTTTGTTCCCTGATATTTCCTTCC
AAGTCGTTGTTAAGTGATCGAAGTATTAGTGAGCGTGTCACTCTTACTTG
TCTGGTAGGCTTTAATGTGTtacagtagactcccggttattcgaagctcc
AAGGGGTTTGagaatttacttcgaataaccgggagttcAAATAACTGCAA
AATTCATTTTCCCACCAGATTCTAAAATTAACCTTAATTGGAGGGGCTTT
TCTGAAGTAATTGAGGCATTGCAGTTCAGTTGAGCGtaataaacacaaag
aaattgcTTGAATAGCGATATATAGCCCTGAATATTGAAACctgattttt
aaaggaaaaaaattatttcaatcgCAGATCTCCCaataagaaaaattcga
ataaccGAGGGTGATTTAGACTAGAATGTACCCCAAGGGGAAAAGAAATc
gcttcgaataactgaaagttCAAATAACTGAAGTTCGAATAACCGAAAGT
GTTTTTGCCTGGGTTGAGTAAGCAGATCCAAGGGGAACGCCATCTCACTT
CGAATAACCAAATGTGCAggttcgaataaccgggagtctactgtaTTCGT
CAGTGAGACGGAAGTGGCAACTCATGTGGCTCATTCATTCTAAATAAACA
ATTTCTCGCGTTTTTCATTTAAAGATTTCAGTCAAATACAATGTTCCAGA
AGAGATGATCAAACAGGTCTTTAAGAAGACCAAAAAAGGGTACGGcctgt
ttttcaataatttcttcaaTTACTTGTTTCAcgatgtttttttgtttgtt
tttttatgttaACTGTGATGTTTCaaacttcaaaattttgtttcatttta
ttgtGTGATGTTTTACTTAATGACCTTGGGCCTTCATGAAGAAACAATTT
TGAGTTCTTCTTCGGTCAGAATCCTACTAAAACTgtttgaagaaaagaaa
atcataaaaagtaatgcaATTTTGAACATTTGTTCTTTTCCAGGATTTTG
GTGTTTGTTGACGATCAGTTGGTGGAGCAATTTGTGGATGAAGATGACTT
CCTCATTTCCATCGACTTCGANCGTATCACATTGCACTTGCCTCTTCATT
AGTTTACAAAATAACCCTTGCGCTTGTTGTGTTCTTCTAGAGATCAACAG
ACGGAGCAACTTCTATTAATACTGGTGGATTCTTCTCGCAGTTAAGGTAA
AGCAATTGATGATGGGTTTTTTTCATGAGTTTCTGTGTGAACAATTTGTA
GGGACGGTTATCGCTAACAGTAGAGTGACTTAAGTATTCCTTTTCGTGTC
AAATTTTCAGAGAGCGAGAAAACAAACGAGGATTCAATGCGGCCCTTTCA
AATGCaaaggtaatttttttactttatgtTTCATGTTAAACTAGAAATTT
ACAAAAACCTTTCATGTTATATTGATGTCATAGAGGACTTACTTGCAGAG
TTTTGTATATTGTGTTTCTCTTTAGGACGATTTGGAACAACTAGATGTTC
TTCCTCGGTCAAAGAAAGCCAACTTTTGTATGAAGAAATCACCAGGTAAT
GATTTGATGAATGTTCTCGTCTTCTCCTTGCTAATCTCAAACATTTGACA
GTTCGTTAACTCcatcaaaaaacctttttttagccgtcACAATATATGTA
cgcaaagaagaagaaaaagcttACAATGCTTTGATGTTAGAAGTTGCAAC
TCTTGACTCGCTTAAAAATGCTGTAAGTTAAATCTTTTGTTTCCTGATAT
TTCCTTCCAAGTCGTTGTTAAGTGATCGAAGTATTAGTAAGCGTGTCACT
CTAACTTGTCTGGTAGGCTTTAAATTATAGTGTTATagtagactcccggt
tattcgaagctccAAGGGGGTTGAtaatttacttcgaataaccgggagtt
cAAATAACTGCAAAATTCATTTTCTCACCAGATTCTAAACTTAACCTTAA
TTGGAGGGGCTTTTCTGAAGTAATTGAGGCAGTTCAGTTGAAAGACAGAA
ACACAAAGAAATTGCTTGAATAGCGATATATAGCCCTGAATATTGAAAct
tggttttttgaagaaaaaaattatttcaatcgCAGAAAATTAATGTTCTA
ACTCGACGATCTCCCAATAAGAGAAATTCGAATAACCGAGGGTGATTTAG
CCTATAATGTACCCCAAGGGGAATAGAAATCGCTTCGAATAACTGAAGTT
CAAATAACTGAAGTTCGAATAACCGAGAGTGTTTTTGCCTGGGTTGAGTA
AGCAGATCCAAGGGGAACGCCATCTCACATCGAATAACCAAATtattcga
ataaccgggagtctactgtaTTCGTCAGTGAGACGGAAGTGGCAACTCAT
GTGGCTCATTCATTCTGAATAAACAATTTCTCACGTTTTTCATTTAAAGA
TTTCAGTCAAATATAATGTTCCAGAAGAGATGATCAAACAGGTCTTTAAG
AAGACCAAAAAAGGGTACGGcctatttttcaataatttcttcaaTTACTT
GTTTCacgatgttttttttgtttgtttttttatgttaACTGTGATGTTTC
aaacttcaaaattttgtttcattttattgtGTGATGTTTTACTTAATGAC
CTTGTGCCTTCATGAAGAAACAATTTTGAGTTCTTCTTTGGTCAGAATCC
TACTAAAACTgtttgaagaaaagaaaatcataaaaagtaatgcaATTTTG
AACATCTGTTCTTTTCCAGGATTTTGGTGTTTGTTGACGATCAGTTGGTG
GAGCAATTTGTGGATGAAGATGACTTCCTCATTTCCATCGACTTCGATAA
TCAAATGGGTCATTTTGAAGTGGTCTTCAATTGCTGATTTAATTTAATTA
GTAGGCTTTTCGAGTTGGTAAATCAGTCGAAAAATTTCGCTCATTCCACT
ACttcaaaatatctttccaacaggtTCCTCGACAATAAGAGTTTTCAttg
ctttttatttcaaaatttgtttcgaccgttttttttacttttgcagACTT
TTTGTGTTTTAGTGGCAATCTTTTTTACTGGTAGTATGCATGCATTTCAA
AGTAATatttaaaatttacttttttattgactttagcttttctaaaatat
ttttcagggtAGAAAGGCTAGAATTAATTCTACTCCAGAAAGCAATCCCA
ATTGCTTCTTCTCCCCCAGAAAATATTGTTTTTTATTTTGATAAACTTTT
TGGAAGTCTTTTTTATGAGAAGGTGTTTATTATATTGTAACAGAGAAAAA
GAGATAACTCATAACATTTGTACATAGAAAGATGATTTGTTTTTATCAAA
TATTATATCCACCTCAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011188XLOC_011188Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019881-exon-sc0000339-1491911889:223628..223738TCONS_00019881-exon-sc0000339-1491911889:223628..223738Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:223628..223738TCONS_00019881-exon-sc0000339-1510915933:223628..223738Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:223628..223738TCONS_00019881-exon-sc0000339-1575043694:223628..223738Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:226497..226829TCONS_00019881-exon-sc0000339-1491911889:226497..226829Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:226497..226829TCONS_00019881-exon-sc0000339-1510915933:226497..226829Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:226497..226829TCONS_00019881-exon-sc0000339-1575043694:226497..226829Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:227012..227159TCONS_00019881-exon-sc0000339-1491911889:227012..227159Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:227012..227159TCONS_00019881-exon-sc0000339-1510915933:227012..227159Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:227012..227159TCONS_00019881-exon-sc0000339-1575043694:227012..227159Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:227435..227466TCONS_00019881-exon-sc0000339-1491911889:227435..227466Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:227435..227466TCONS_00019881-exon-sc0000339-1510915933:227435..227466Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:227435..227466TCONS_00019881-exon-sc0000339-1575043694:227435..227466Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:227585..227633TCONS_00019881-exon-sc0000339-1491911889:227585..227633Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:227585..227633TCONS_00019881-exon-sc0000339-1510915933:227585..227633Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:227585..227633TCONS_00019881-exon-sc0000339-1575043694:227585..227633Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:227746..227810TCONS_00019881-exon-sc0000339-1491911889:227746..227810Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:227746..227810TCONS_00019881-exon-sc0000339-1510915933:227746..227810Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:227746..227810TCONS_00019881-exon-sc0000339-1575043694:227746..227810Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:227911..227956TCONS_00019881-exon-sc0000339-1491911889:227911..227956Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:227911..227956TCONS_00019881-exon-sc0000339-1510915933:227911..227956Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:227911..227956TCONS_00019881-exon-sc0000339-1575043694:227911..227956Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:228109..228167TCONS_00019881-exon-sc0000339-1491911889:228109..228167Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:228109..228167TCONS_00019881-exon-sc0000339-1510915933:228109..228167Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:228109..228167TCONS_00019881-exon-sc0000339-1575043694:228109..228167Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:228248..228342TCONS_00019881-exon-sc0000339-1491911889:228248..228342Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:228248..228342TCONS_00019881-exon-sc0000339-1510915933:228248..228342Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:228248..228342TCONS_00019881-exon-sc0000339-1575043694:228248..228342Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:228641..228696TCONS_00019881-exon-sc0000339-1491911889:228641..228696Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:228641..228696TCONS_00019881-exon-sc0000339-1510915933:228641..228696Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:228641..228696TCONS_00019881-exon-sc0000339-1575043694:228641..228696Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:229091..229291TCONS_00019881-exon-sc0000339-1491911889:229091..229291Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:229091..229291TCONS_00019881-exon-sc0000339-1510915933:229091..229291Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:229091..229291TCONS_00019881-exon-sc0000339-1575043694:229091..229291Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:229576..229632TCONS_00019881-exon-sc0000339-1491911889:229576..229632Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:229576..229632TCONS_00019881-exon-sc0000339-1510915933:229576..229632Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:229576..229632TCONS_00019881-exon-sc0000339-1575043694:229576..229632Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:230558..230659TCONS_00019881-exon-sc0000339-1491911889:230558..230659Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:230558..230659TCONS_00019881-exon-sc0000339-1510915933:230558..230659Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:230558..230659TCONS_00019881-exon-sc0000339-1575043694:230558..230659Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:231000..231072TCONS_00019881-exon-sc0000339-1491911889:231000..231072Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:231000..231072TCONS_00019881-exon-sc0000339-1510915933:231000..231072Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:231000..231072TCONS_00019881-exon-sc0000339-1575043694:231000..231072Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:231247..231377TCONS_00019881-exon-sc0000339-1491911889:231247..231377Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:231247..231377TCONS_00019881-exon-sc0000339-1510915933:231247..231377Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:231247..231377TCONS_00019881-exon-sc0000339-1575043694:231247..231377Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:233318..233373TCONS_00019881-exon-sc0000339-1491911889:233318..233373Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:233318..233373TCONS_00019881-exon-sc0000339-1510915933:233318..233373Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:233318..233373TCONS_00019881-exon-sc0000339-1575043694:233318..233373Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:233488..233536TCONS_00019881-exon-sc0000339-1491911889:233488..233536Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:233488..233536TCONS_00019881-exon-sc0000339-1510915933:233488..233536Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:233488..233536TCONS_00019881-exon-sc0000339-1575043694:233488..233536Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:233653..233722TCONS_00019881-exon-sc0000339-1491911889:233653..233722Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:233653..233722TCONS_00019881-exon-sc0000339-1510915933:233653..233722Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:233653..233722TCONS_00019881-exon-sc0000339-1575043694:233653..233722Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:233811..233899TCONS_00019881-exon-sc0000339-1491911889:233811..233899Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:233811..233899TCONS_00019881-exon-sc0000339-1510915933:233811..233899Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:233811..233899TCONS_00019881-exon-sc0000339-1575043694:233811..233899Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:234577..234641TCONS_00019881-exon-sc0000339-1491911889:234577..234641Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:234577..234641TCONS_00019881-exon-sc0000339-1510915933:234577..234641Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:234577..234641TCONS_00019881-exon-sc0000339-1575043694:234577..234641Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1491911889:234897..235497TCONS_00019881-exon-sc0000339-1491911889:234897..235497Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1510915933:234897..235497TCONS_00019881-exon-sc0000339-1510915933:234897..235497Clytia hemisphaericaexon
TCONS_00019881-exon-sc0000339-1575043694:234897..235497TCONS_00019881-exon-sc0000339-1575043694:234897..235497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:223628..235497 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.84706	7.0788	2.4845	1.60915	30.5632	22.5055	35.3851	40.3829	18.1255	17.7411	16.1469	19.5351	24.7256	30.7174	18.9412	23.7084	15.0859	14.0374	12.9071	9.3566	14.6514	15.4621	14.2409	12.5009	20.7483	21.0314	6.41171	7.5661	10.8496	11.9797
Blast
[Close]
BLAST of TCONS_00019881 vs. Swiss-Prot (Human)
Match: GRHL1 (Grainyhead-like protein 1 homolog OS=Homo sapiens GN=GRHL1 PE=1 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 7.512e-71
Identity = 149/375 (39.73%), Postives = 223/375 (59.47%), Query Frame = 2 
Query:  863 YMYVLEAQTSLVQKRGEDSLTYLNKGQFYFISF------EAQHSKAVRVKSIIHLVFRNEKEPDNELTHWRYWYNQQPNPNQRALDI-DMK-SCQNIEDVEEVGYNALAVYWDPNAKSKVSLRINCLSTDFSAQKGVKGIPLHLQIDTFEDFSDATIPTHRAFCQIKVFRDKGAERKNKDEAKTVNKRVVKYLKGSDNAQADMLHVFQMQNKVTFLYPTTNILSKSVVFVPPKE-REKERTRSTDGATSINTGGFFSQLRERENKRGFNAALSNAKDDLEQLDVLPRSKKANFCMKKSPAVTIYVRKEEEKAYNALMLEVATLDSLKNAISVKYNVPEEMIKQVFKKTKKGILVFVDDQLVEQFVDEDDFLISID 1960
            + Y LEA  SL QK G+ ++TYLNKGQFY I+       E  H    +V+S+I +VF  +K  +++L HW+YW+++Q    QR +DI D K S   I ++EE+ YNA++  WD N ++KV + +NCLSTDFS+QKGVKG+PL++Q+DT+   + +  P HRA+CQIKVF DKGAERK +DE +  +KR V       + +  +L   +  + +T   P  ++ ++ V+F+P       +R        S    G  S L     KRG        +DD     V P +K A   +++   V +YVRKE E+ ++ALML+  +L  L  AIS KY+VP + I ++FKK KKGILV +DD +V+ + +ED F + I+
Sbjct:  252 FEYTLEASKSLRQKPGDSTMTYLNKGQFYPITLKEVSSSEGIHHPISKVRSVIMVVFAEDKSREDQLRHWKYWHSRQHTAKQRCIDIADYKESFNTISNIEEIAYNAISFTWDINDEAKVFISVNCLSTDFSSQKGVKGLPLNIQVDTYSYNNRSNKPVHRAYCQIKVFCDKGAERKIRDEERKQSKRKVS------DVKVPLLPSHKRMD-ITVFKPFIDLDTQPVLFIPDVHFANLQRGTHVLPIASEELEGEGSVL-----KRG----PYGTEDDFA---VPPSTKLAR--IEEPKRVLLYVRKESEEVFDALMLKTPSLKGLMEAISDKYDVPHDKIGKIFKKCKKGILVNMDDNIVKHYSNEDTFQLQIE 605
The following BLAST results are available for this feature:
BLAST of TCONS_00019881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRHL17.512e-7139.73Grainyhead-like protein 1 homolog OS=Homo sapiens ... [more]
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