TCONS_00019864 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019864
Unique NameTCONS_00019864
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019864 ID=TCONS_00019864|Name=TCONS_00019864|organism=Clytia hemisphaerica|type=transcript|length=566bp
TGCAACATCAACAATTTCAACAATTGATGTTGCAGCGGACATCATCTGCT
GTAAgctaaaatttcgtttttctttttaggaaatttttttgggcctgaaA
TGACGTAGGAATGGCTAAAAACAAtacaaaattagaaataaagcaaaatg
ggCAAAATGAGCGATCGAAGAAATTAGGTGTACTGGAGATGGTTCATGTA
GTACTATTACATCTCCGTCCTCCATCCACCGTTCCGGAGTGAAAAGAAAA
AACGAGGAAGTGAGTTTGTGCTTGTGGAAACATATTTTTAGTagtatttc
tatattttttcccAAGAGTTCTACGAATTTCTGAGTTTTCTCGAAAATGC
GGGACATCTTAGGTATGCAGGCGGAATTCGGGACAAAGAGCTTAAATGCG
GGACGGCTGGCAACTATGTTATTAGTCCTATCACAAGCGAAGTCAATGAG
TTTCTACCAATGTAACCGATTTCCTTGTCTCGACTCTAAGACATATTGAT
AAGACATTTGTAAGTGGAAAGTGGAATAATTCTAATTATTTGAATAGATt
ggaagatgaagatgaa
Run BLAST on NCBI

transcript from alignment at sc0000338:308267..308832

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019864 ID=TCONS_00019864|Name=TCONS_00019864|organism=Clytia hemisphaerica|type=transcript|length=566bp|location=Sequence derived from alignment at sc0000338:308267..308832 (Clytia hemisphaerica)
ttcatcttcatcttccaATCTATTCAAATAATTAGAATTATTCCACTTTC
CACTTACAAATGTCTTATCAATATGTCTTAGAGTCGAGACAAGGAAATCG
GTTACATTGGTAGAAACTCATTGACTTCGCTTGTGATAGGACTAATAACA
TAGTTGCCAGCCGTCCCGCATTTAAGCTCTTTGTCCCGAATTCCGCCTGC
ATACCTAAGATGTCCCGCATTTTCGAGAAAACTCAGAAATTCGTAGAACT
CTTgggaaaaaatatagaaatactACTAAAAATATGTTTCCACAAGCACA
AACTCACTTCCTCGTTTTTTCTTTTCACTCCGGAACGGTGGATGGAGGAC
GGAGATGTAATAGTACTACATGAACCATCTCCAGTACACCTAATTTCTTC
GATCGCTCATTTTGcccattttgctttatttctaattttgtaTTGTTTTT
AGCCATTCCTACGTCATttcaggcccaaaaaaatttcctaaaaagaaaaa
cgaaattttagcTTACAGCAGATGATGTCCGCTGCAACATCAATTGTTGA
AATTGTTGATGTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011183XLOC_011183Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019864-exon-sc0000338-1491911889:308267..308832TCONS_00019864-exon-sc0000338-1491911889:308267..308832Clytia hemisphaericaexon
TCONS_00019864-exon-sc0000338-1510915933:308267..308832TCONS_00019864-exon-sc0000338-1510915933:308267..308832Clytia hemisphaericaexon
TCONS_00019864-exon-sc0000338-1575043694:308267..308832TCONS_00019864-exon-sc0000338-1575043694:308267..308832Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000338supercontigsc0000338:308267..308832 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.23349	0.445259	1.35024	1.65125	0.461766	0.174772	0.205029	0	0.0837434	0.622379	0	0.264739	0.132186	0.333471	0.0798708	0.0605578	0.157731	0.436434	0	0.22109	0.361257	0	0.227888	0	0.320091	0.761797	0	0.335064	0.551506	0.112379
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019864 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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