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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019856 ID=TCONS_00019856|Name=TCONS_00019856|organism=Clytia hemisphaerica|type=transcript|length=1156bp
atatttttttattctaaaatcaCTTATCAACTATGGTATATCTTATAATG
GAAACTGTTTCTTGAAGGCTGCAGAGTTTGATCTTATCCTCAATGAATCT
CTGGTCCTTGATTGGTGAAACTGAAACTCCTTGTCCTTTAGAATAGAAGC
CCAAGCTGCTCGGCCATACTTTTGGATAcctaaattcaaaaaatggtccT
CTTCGCTTgtaaatttgatattctttGTCTTTTTAGTCGATGCATTTGTT
TCATTTACATTTTTTGTCGCCATTACTGGTGCCATTGCTTTCAATGGTAG
TTGCGAAATTACGGGTGATGTAGTGGTTGTAGGAGTCGAAGTAAAATCTG
TTGATGTATCAAAATCATCATCAATTGGTTGGTACGGATCAAGATACTTA
GAACAAGTGGGTTCTTGATTAATTTCTGTTGTTTGGTTGGCTGCAATTGG
TGGGATTGTAGAAATGAtttcttgacttttttctaaCACTTTCGGATCAA
AATTACTATCCAGATTGTGAATAAATTAATAAGATTGTCTGTATCACCTC
TTCCTCCTTTCGTCATTTTATCCATGCATTTTTTCCCTTCGATTGCCACC
TGTCTTGAATGTTTCTTCTTATAGTATATCTTGGCAACTTGTGAACTGTG
TTTCTGGTCCTCTGATACGAATCTCTGTTCTTCAATTGATAACCTTTCAC
TGCTTTCTGTTTCAATGATTTGACGGTATCGAGTTGGATTTATATATCTC
TGGATTGCTTGATGAACGATCATGATCATTGCATTAGTTAGTGACTGAAA
CTGAGTTCCATTCGACGATATCAACACATAATCACAACTAGGTGACAACC
GAGGTCGAACAAATTCGATATACATGTCAATAATATCTAATACATCTTGT
GTAAAAATCAATGTATCGAATAGGTATGTTGCCGAAGTTTTAAATTCAGT
TTGATCgacaaaaccttcattttccttggcCTTTTTAATCATGTTAACAG
TCAAGTACTGAAAGGTCATTGGTCTCGTACACTTAACTCTGAGAAACAAT
AAGGTAGTGATAAATCTTGTAGAGAAAACTAAATCACCTTTTGTAACAAC
ACCGTTTTGTCGACAATTTTCTATTACTCCTTTAAATTTTGGTAGGTGAA
ATGGTA Run BLAST on NCBI protein sequence of TCONS_00019856-protein >TCONS_00019856-protein ID=TCONS_00019856-protein|Name=TCONS_00019856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
PFHLPKFKGVIENCRQNGVVTKGDLVFSTRFITTLLFLRVKCTRPMTFQY
LTVNMIKKAKENEGFVDQTEFKTSATYLFDTLIFTQDVLDIIDMYIEFVR
PRLSPSCDYVLISSNGTQFQSLTNAMIMIVHQAIQRYINPTRYRQIIETE
SSERLSIEEQRFVSEDQKHSSQVAKIYYKKKHSRQVAIEGKKCMDKMTKG
GRGDTDNLINLFTIWIVILIRKC Run BLAST on NCBI transcript from alignment at sc0000338:190478..191633 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019856 ID=TCONS_00019856|Name=TCONS_00019856|organism=Clytia hemisphaerica|type=transcript|length=1156bp|location=Sequence derived from alignment at sc0000338:190478..191633 (Clytia hemisphaerica)
TACCATTTCACCTACCAAAATTTAAAGGAGTAATAGAAAATTGTCGACAA
AACGGTGTTGTTACAAAAGGTGATTTAGTTTTCTCTACAAGATTTATCAC
TACCTTATTGTTTCTCAGAGTTAAGTGTACGAGACCAATGACCTTTCAGT
ACTTGACTGTTAACATGATTAAAAAGgccaaggaaaatgaaggttttgtc
GATCAAACTGAATTTAAAACTTCGGCAACATACCTATTCGATACATTGAT
TTTTACACAAGATGTATTAGATATTATTGACATGTATATCGAATTTGTTC
GACCTCGGTTGTCACCTAGTTGTGATTATGTGTTGATATCGTCGAATGGA
ACTCAGTTTCAGTCACTAACTAATGCAATGATCATGATCGTTCATCAAGC
AATCCAGAGATATATAAATCCAACTCGATACCGTCAAATCATTGAAACAG
AAAGCAGTGAAAGGTTATCAATTGAAGAACAGAGATTCGTATCAGAGGAC
CAGAAACACAGTTCACAAGTTGCCAAGATATACTATAAGAAGAAACATTC
AAGACAGGTGGCAATCGAAGGGAAAAAATGCATGGATAAAATGACGAAAG
GAGGAAGAGGTGATACAGACAATCTTATTAATTTATTCACAATCTGGATA
GTAATTTTGATCCGAAAGTGttagaaaaaagtcaagaaaTCATTTCTACA
ATCCCACCAATTGCAGCCAACCAAACAACAGAAATTAATCAAGAACCCAC
TTGTTCTAAGTATCTTGATCCGTACCAACCAATTGATGATGATTTTGATA
CATCAACAGATTTTACTTCGACTCCTACAACCACTACATCACCCGTAATT
TCGCAACTACCATTGAAAGCAATGGCACCAGTAATGGCGACAAAAAATGT
AAATGAAACAAATGCATCGACTAAAAAGACaaagaatatcaaatttacAA
GCGAAGAggaccattttttgaatttaggTATCCAAAAGTATGGCCGAGCA
GCTTGGGCTTCTATTCTAAAGGACAAGGAGTTTCAGTTTCACCAATCAAG
GACCAGAGATTCATTGAGGATAAGATCAAACTCTGCAGCCTTCAAGAAAC
AGTTTCCATTATAAGATATACCATAGTTGATAAGtgattttagaataaaa
aaatat Coding sequence (CDS) from alignment at sc0000338:190478..191633 >TCONS_00019856 ID=TCONS_00019856|Name=TCONS_00019856|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0000338:190478..191633 (Clytia hemisphaerica)
CCATTTCACCTACCAAAATTTAAAGGAGTAATAGAAAATTGTCGACAAAA
CGGTGTTGTTACAAAAGGTGATTTAGTTTTCTCTACAAGATTTATCACTA
CCTTATTGTTTCTCAGAGTTAAGTGTACGAGACCAATGACCTTTCAGTAC
TTGACTGTTAACATGATTAAAAAGgccaaggaaaatgaaggttttgtcGA
TCAAACTGAATTTAAAACTTCGGCAACATACCTATTCGATACATTGATTT
TTACACAAGATGTATTAGATATTATTGACATGTATATCGAATTTGTTCGA
CCTCGGTTGTCACCTAGTTGTGATTATGTGTTGATATCGTCGAATGGAAC
TCAGTTTCAGTCACTAACTAATGCAATGATCATGATCGTTCATCAAGCAA
TCCAGAGATATATAAATCCAACTCGATACCGTCAAATCATTGAAACAGAA
AGCAGTGAAAGGTTATCAATTGAAGAACAGAGATTCGTATCAGAGGACCA
GAAACACAGTTCACAAGTTGCCAAGATATACTATAAGAAGAAACATTCAA
GACAGGTGGCAATCGAAGGGAAAAAATGCATGGATAAAATGACGAAAGGA
GGAAGAGGTGATACAGACAATCTTATTAATTTATTCACAATCTGGATAGT
AATTTTGATCCGAAAGTGttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019856-exon-sc0000338-1491911889:190478..191633 | TCONS_00019856-exon-sc0000338-1491911889:190478..191633 | Clytia hemisphaerica | exon |
| TCONS_00019856-exon-sc0000338-1510915933:190478..191633 | TCONS_00019856-exon-sc0000338-1510915933:190478..191633 | Clytia hemisphaerica | exon |
| TCONS_00019856-exon-sc0000338-1575043694:190478..191633 | TCONS_00019856-exon-sc0000338-1575043694:190478..191633 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000338 | supercontig | sc0000338:190478..191633 . |
Blast
The following BLAST results are available for this feature:
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