TCONS_00019853 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019853
Unique NameTCONS_00019853
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length843

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019853 ID=TCONS_00019853|Name=TCONS_00019853|organism=Clytia hemisphaerica|type=transcript|length=843bp
GGAAGATTCATTATTTGAGATGAGGCCATAAAACTCCCCAGAAATGTAGC
CCTGCCATATCCTGatcaaatgcaaaaaaaatttctgatctAGGAAGTCT
ATTTGTGAAAATATCTAAAGAATGGCAAACAGCGTAAAAGCGAGAAATCT
AAGGAAAAATATCAACACACTAAGATAAAGCCAGTAAGGTGAAATATTAC
AATGAAATCAATATGAAATGATGCTAAGGGTGAAACCAGATTTATCTTTT
ACATAATCAAAATAAGAGTTAGTTTCTTGAGCAATCTGTTCAAATATAGC
ATCAGTGAAAAATAGCTGTAAAAATTGGAAAGGTGTTTCTGGTACTGAAG
CCAACCGGCAAGGTCCAGTACTCTCAGTAAATTGTACGTCGACATTGGAG
TTGGCTATAATTACATCTTCTGATACAGTTTTCCAACCAGGATTACCATc
aagtttctttttctttcctccAGCAGAGTTAGGTTGTTTGTCAGCATTAC
GTTTTCGCCCATTTCCACGAACACCGCCTCGACTACTTCCACGACCACCG
CCTCGACTACTTCCACGACCACCGCCTCGACTACTTCCACGACCACCGCC
TCGACTACTTCCCCGGCCACATCTACCACCTCGTCCACGACTACTACAGC
CACGTTCCAACCTGGCATTGACCCCTTGACTTTCAGAAGGTATAGATGGA
TTTTCAAGTGAGGCATCACAAGCTTCATCTTGGATTTCATTTGCATGGGT
AATCTGACTGTCGTCGTGAGATTCAACTACAGTTTCGGTTGTTGTCGGTT
CATCTACGTTGTTTACGACAGGATCAGGAATGCGGTCAACCCC
Run BLAST on NCBI

protein sequence of TCONS_00019853-protein

>TCONS_00019853-protein ID=TCONS_00019853-protein|Name=TCONS_00019853-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
GVDRIPDPVVNNVDEPTTTETVVESHDDSQITHANEIQDEACDASLENPS
IPSESQGVNARLERGCSSRGRGGRCGRGSSRGGGRGSSRGGGRGSSRGGG
RGSSRGGVRGNGRKRNADKQPNSAGGKKKKLDGNPGWKTVSEDVIIANSN
VDVQFTESTGPCRLASVPETPFQFLQLFFTDAIFEQIAQETNSYFDYVKD
KSGFTLSIISY
Run BLAST on NCBI

transcript from alignment at sc0000338:121432..122274

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019853 ID=TCONS_00019853|Name=TCONS_00019853|organism=Clytia hemisphaerica|type=transcript|length=843bp|location=Sequence derived from alignment at sc0000338:121432..122274 (Clytia hemisphaerica)
GGGGTTGACCGCATTCCTGATCCTGTCGTAAACAACGTAGATGAACCGAC
AACAACCGAAACTGTAGTTGAATCTCACGACGACAGTCAGATTACCCATG
CAAATGAAATCCAAGATGAAGCTTGTGATGCCTCACTTGAAAATCCATCT
ATACCTTCTGAAAGTCAAGGGGTCAATGCCAGGTTGGAACGTGGCTGTAG
TAGTCGTGGACGAGGTGGTAGATGTGGCCGGGGAAGTAGTCGAGGCGGTG
GTCGTGGAAGTAGTCGAGGCGGTGGTCGTGGAAGTAGTCGAGGCGGTGGT
CGTGGAAGTAGTCGAGGCGGTGTTCGTGGAAATGGGCGAAAACGTAATGC
TGACAAACAACCTAACTCTGCTggaggaaagaaaaagaaacttgATGGTA
ATCCTGGTTGGAAAACTGTATCAGAAGATGTAATTATAGCCAACTCCAAT
GTCGACGTACAATTTACTGAGAGTACTGGACCTTGCCGGTTGGCTTCAGT
ACCAGAAACACCTTTCCAATTTTTACAGCTATTTTTCACTGATGCTATAT
TTGAACAGATTGCTCAAGAAACTAACTCTTATTTTGATTATGTAAAAGAT
AAATCTGGTTTCACCCTTAGCATCATTTCATATTGATTTCATTGTAATAT
TTCACCTTACTGGCTTTATCTTAGTGTGTTGATATTTTTCCTTAGATTTC
TCGCTTTTACGCTGTTTGCCATTCTTTAGATATTTTCACAAATAGACTTC
CTagatcagaaattttttttgcatttgatCAGGATATGGCAGGGCTACAT
TTCTGGGGAGTTTTATGGCCTCATCTCAAATAATGAATCTTCC

Coding sequence (CDS) from alignment at sc0000338:121432..122274

>TCONS_00019853 ID=TCONS_00019853|Name=TCONS_00019853|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0000338:121432..122274 (Clytia hemisphaerica)
GGGGTTGACCGCATTCCTGATCCTGTCGTAAACAACGTAGATGAACCGAC
AACAACCGAAACTGTAGTTGAATCTCACGACGACAGTCAGATTACCCATG
CAAATGAAATCCAAGATGAAGCTTGTGATGCCTCACTTGAAAATCCATCT
ATACCTTCTGAAAGTCAAGGGGTCAATGCCAGGTTGGAACGTGGCTGTAG
TAGTCGTGGACGAGGTGGTAGATGTGGCCGGGGAAGTAGTCGAGGCGGTG
GTCGTGGAAGTAGTCGAGGCGGTGGTCGTGGAAGTAGTCGAGGCGGTGGT
CGTGGAAGTAGTCGAGGCGGTGTTCGTGGAAATGGGCGAAAACGTAATGC
TGACAAACAACCTAACTCTGCTggaggaaagaaaaagaaacttgATGGTA
ATCCTGGTTGGAAAACTGTATCAGAAGATGTAATTATAGCCAACTCCAAT
GTCGACGTACAATTTACTGAGAGTACTGGACCTTGCCGGTTGGCTTCAGT
ACCAGAAACACCTTTCCAATTTTTACAGCTATTTTTCACTGATGCTATAT
TTGAACAGATTGCTCAAGAAACTAACTCTTATTTTGATTATGTAAAAGAT
AAATCTGGTTTCACCCTTAGCATCATTTCATATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011172XLOC_011172Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019853-exon-sc0000338-1491911889:121432..122274TCONS_00019853-exon-sc0000338-1491911889:121432..122274Clytia hemisphaericaexon
TCONS_00019853-exon-sc0000338-1510915933:121432..122274TCONS_00019853-exon-sc0000338-1510915933:121432..122274Clytia hemisphaericaexon
TCONS_00019853-exon-sc0000338-1575043694:121432..122274TCONS_00019853-exon-sc0000338-1575043694:121432..122274Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019853-proteinTCONS_00019853-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000338supercontigsc0000338:121432..122274 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0559586	0.163705	0.0633592	0	0.22639	0.0596321	0.0719436	0.134705	0.565863	0.116819	0.226774	0.149072	0.0744326	0	0.158876	0.272797	0.0840158	0.12917	0	0	0.108208	0	0.064161	0.0583317	0.0600803	0.0536202	0.0767303	0	0.0621097	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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