TCONS_00019849 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019849
Unique NameTCONS_00019849
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019849 ID=TCONS_00019849|Name=TCONS_00019849|organism=Clytia hemisphaerica|type=transcript|length=449bp
GTGGATAATTGTGTGGAAGTATcccaaaatttgccaaaaagaTTTCGTGA
CTTGCAACACATTTTTTAAACTGAACGGCAATTTTTTCTGTGGGTTTTGT
CTTGTGCCCTTGTGCTNTTTGGAAGATTTTCAGTAGGCAAGGCAAAAAGT
TTGAGCTTCCTTAATCCTGTCCTTGTGTATTCAAAATCAGACTCGGTGAA
ATGCAGGGAACAAAACCAGACCTTCGACTCATCTATTCTACTTTGATTTG
AAGGCACTTGTCAACAACACGATACTTTTTAATAATATCAACCAATTGCT
TTTTCCAATCCCTATCTATTGCTTTGGAAGGTAATTTAAACAAACTAACT
CCCTTGTACTGAGGTAAACCTGAATAGACAGGACAACCAGGAAAAACACA
ACAAGTCCCACTCGTTCTCACCATTTTTTTgaggttgtttttatttttt
Run BLAST on NCBI

transcript from alignment at sc0000338:49842..50290

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019849 ID=TCONS_00019849|Name=TCONS_00019849|organism=Clytia hemisphaerica|type=transcript|length=449bp|location=Sequence derived from alignment at sc0000338:49842..50290 (Clytia hemisphaerica)
aaaaaataaaaacaacctcAAAAAAATGGTGAGAACGAGTGGGACTTGTT
GTGTTTTTCCTGGTTGTCCTGTCTATTCAGGTTTACCTCAGTACAAGGGA
GTTAGTTTGTTTAAATTACCTTCCAAAGCAATAGATAGGGATTGGAAAAA
GCAATTGGTTGATATTATTAAAAAGTATCGTGTTGTTGACAAGTGCCTTC
AAATCAAAGTAGAATAGATGAGTCGAAGGTCTGGTTTTGTTCCCTGCATT
TCACCGAGTCTGATTTTGAATACACAAGGACAGGATTAAGGAAGCTCAAA
CTTTTTGCCTTGCCTACTGAAAATCTTCCAAANAGCACAAGGGCACAAGA
CAAAACCCACAGAAAAAATTGCCGTTCAGTTTAAAAAATGTGTTGCAAGT
CACGAAAtctttttggcaaattttgggATACTTCCACACAATTATCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011168XLOC_011168Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019849-exon-sc0000338-1491911889:49842..50290TCONS_00019849-exon-sc0000338-1491911889:49842..50290Clytia hemisphaericaexon
TCONS_00019849-exon-sc0000338-1510915933:49842..50290TCONS_00019849-exon-sc0000338-1510915933:49842..50290Clytia hemisphaericaexon
TCONS_00019849-exon-sc0000338-1575043694:49842..50290TCONS_00019849-exon-sc0000338-1575043694:49842..50290Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000338supercontigsc0000338:49842..50290 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.229768	0.170958	0.191844	0.361593	1.55919	1.14115	1.06096	1.83556	1.43749	2.23706	0.564403	1.31742	1.58263	1.44902	0.469534	0.338873	0	0.598345	2.10688	2.78277	1.5562	1.34979	0.338984	0.747704	0.476136	1.55811	1.54762	0.592825	0.725498	0.900262
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019849 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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