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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019848 ID=TCONS_00019848|Name=TCONS_00019848|organism=Clytia hemisphaerica|type=transcript|length=3681bp
TTCAAAAGATTAAAGATGAAAGATTGGACTCAGCTGGCGTGAAAAGAAAG
AGCGATTGCTGATACGTTGAAAATCGACTCGACAAGCAGAGCACTCGGAC
AAAAAACAACCACTTTCTTCAATAAATAATGGAACAAAAGGTAACAAAGT
AAAAAACAGTTAGTCGGCTGATAGTGTTGGAACTTAAAGAGGTCAACGAT
CACTGGTTTAAATGAGGccctagacggttcccgtcgtaaCACTATCACAC
GTAATTTCTTCGCTTTCTGAACGatcttaaaaatcaaaagaatgcTCATC
ACGCcatttttcaattaaaatagcccaaatcatgcaTCACAGACCATGTT
TTTGTCATGTCCTGTATCATACTAAGATACTAGCTCACGGCATAACCAAT
GCAAAATCTTTTTGGAATCACGacttcaagcaaaaaaatttcccaatcAC
ACTATTTCGCAAACCACTGGGGTCTCCTAAATGAACTACAAAATGTCTAC
GTTGCACCGATAAAATAAAACAGTACATCGATACCATTTTAACAAATTAA
TAAACTACAAACTACCAGTTCGCTGCGTCGAAATCTCGGTCTAAGAAGGC
TTTTTGAACTTCACAACGAAAATATGCATCATCCACAATATCACACCAAT
ATTTACAAACAAGAGGAAGTACACCGTGCATCGTTTCCTTTTCTAAGCAA
ACTGATTtaaaaatttggtgtaagatTTCAGGCGGTaaagaattaatttt
tgaaCCATCAGGTATTCTCGAACAAACACGGCAAAGCGGATTTTGTGGTA
AAGTTCCTTTCGAGAGCTCTACGCAGTCCTCATGAAAAAGATTATGACAA
TTAtgacattttttcaatttcgtcATATCAGCAGTGGGCTGGCGACAGCT
ACaatacaaaatttctttccacTCAAACAAAATCCGAGCACCATTGGATA
CCTCATCATTTATTGAAATACTTTCATCTAGCCCACTACCCGTCTCCATA
TATCTCACAAACGCACTCGAAAGTTCTGTGctcttgaaaatatattttga
ggGGTCACTATTTATAGAAAGCAGGTGAGCAATGTATAAACAATACATTG
CGCTGAGGTTAGCCGTTGGTGCTTGTGGAACATCAATTACTTGGAAATTG
ATGCTTTTTCCTGGATATCGAATCAACGAACGTACCGCATTCACAAAAGA
AATTCTATAATTAATCTGCTGATCGTTATTTCTGAGAGATGTTTTCATAA
AAGGgtcaaaaacaaagacattttcgGTGGGAATTCTGGATGCCACAATA
ACAGGAAAACTGCTGCTAACTACAACCCACTGATTCTTGTACAAACGAAT
TATTTGTAAAAAGCCTTCATCACCTCCGTAGAATCGATTTTCGACAACAC
CTTGAAAATCTGTTATTCGTGGatgagaaataaaattcataCAGCTATTC
ATCAAAGTTCCAGAAAATGGGCCTCCGGATAGAATAGCGCTCCTGTCTTT
TATCAAAAGATCAACAGTCCCGTACTCTGTATCACCAAGCTCCCATGCAT
CATTTGGGTCTGCCGAAACTAACCGAGGCTTTTCAAACCCCTCTCCATCT
TCAAAATCTCGACCTACCGTGTCCAAACATCGGCGTTTAGTTATACGCTC
ATCGACTACAAAATCACTGAAACGCTTTTGTTTGTTTCGTTCTGGATTTG
TTGCCTAGCTGGNCGAAAGTTCTGTGctcttgaaaatatattttgaggGG
TCACTATTTATAGAAAGCAGGTGAGCAATGTATAAACAATACATTGCGCT
GAGGTTAGCCGTTGGTGCTTGTGGAACATCAATTACTTGGAAATTGATGC
TTTTTCCTGGATATCGAATCAACGAACGTACCGCATTCACAAAAGAAATT
CTATAATTAATCTGCTGATCGTTATTTCTGAGAGATGTTTTCATAAAAGG
gtcaaaaacaaagacattttcgGTGGGAATTCTGGATGCCACAATAACAG
GAAAACTGCTGCTAACTACAACCCACTGATTCTTGTACAAACGAATTATT
TGTAAAAAGCCTTCATCACCTCCGTAGAATCGATTTTCGACAACACCTTG
AAAATCTGTTATTCGTGGatgagaaataaaattcataCAGCTATTCATCA
AAGTTCCAGAAAATGGGCCTCCGGATAGAATAGCGCTCCTGTCTTTTATC
AAAAGATCAACAGTCCCGTACTCTGTATCACCAAGCTCCCATGCATCATT
TGGGTCTGCCGAAACTAACCGAGGCTTTTCAAACCCCTCTCCATCTTCAA
AATCTCGACCTACCGTGTCCAAACATCGGCGTTTAGTTATACGCTCATCG
ACTACAAAATCACTGAAACGCTTTTGTTTGTTTCGTTCTGGATTTGTTGC
CTAGCTGGTATCGCTAAGGAGATTTCTTCTTCGTTACTAGAATCGGAAGA
AAAATCAGGCACGTTAGAATGCTGAATGCCtgtacaattttcattttttt
ccgaAACATTGTTTATCTGATAATGGTCAGTAGGCCTCCCAATTTTCACT
CTTCCAAACAAATCATAATGAACACCATCAAATCTTTGAAACCTTTTCAA
AATACCATCCACAATCCTACGACTTTTTCCCATATTATAATGCCCCAAAA
TTGATCGGAATAAGAAAATATGATTAATTGGTAAACACATGTTTAAAAAC
TTTGTCGATTCCCTGAATCTTCCATGAAGTTGCTCTTCCACTTGAGAATT
AATTTGGCAATGAAGCTCGGGGATTATGTTTATTCTTCTCAAAACTTCAA
CTTCCGAGCTCGTGTTACCTTCATGAAACCTGTCAAAAAGGCAAAAATGT
TGATCACTACCGGTGACAGGATGACAACGAGGTTCGATGTTTTCATTGTC
AGATAAATGGTTGGTAGGGTTCATCCAAGGAAACGATCTCTCCAAATCTC
CATTTGTTGCATCGGCAACCATTTGAGGATCTTCTGGATCATCAATCCTT
CCATCGAAGGGATAAAATAAGTTCCCTTCCTGATCACCTTTTCCCAGCCG
TAAAGTGTCTTCCCGTCTAGATCCATTGGCGTGGCGCGCAAGCATATGCG
CCAAATCAACTATGATCACATTAGGCACGTATTTAAAGGAGAGAATACCA
TCGACATAATCCCTGCAGCTCTCGGCTCTCAATAGAAATTTAACATAATA
CACAACACCGTGTATACAGGAAAAGCTTAACCATCCCCCAGAATGACCCC
AAAGCTTtgtaaaaacctttttaaacctgCTACCCTCAGTTGGGAGCGCC
TCTTTGATTCGGTTCAAGACATCCATTTTGGACCCATTGGTACTAAAACC
ACACGACCTGGCAatgctttttacttttttagaaCTTTCATTAGTTAGCA
TTTCCAGAATCCTCTCTTCACTCACTTCTCGAAAATCTTCCTCCATGGCA
TCTGTACGGGAAGACACTTTCTTGAATTCGGTATTCAAGAGTTTAGAGGA
GTTTCTTGATTTCTTGTTGATAAAAGGTGACCAATATTTgagatttggtt
tgattttgatGCCATTGAAACCCGGAAAACCCCTACTAACAATTTCAAGC
TCAACGTTTTCCCAAAAATTATCGGAATCAACTTCTCCATCAAAATTCTC
ATCAATTTCATCTGCACCGATATCTTCCATG Run BLAST on NCBI protein sequence of TCONS_00019848-protein >TCONS_00019848-protein ID=TCONS_00019848-protein|Name=TCONS_00019848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=442bp
MEDIGADEIDENFDGEVDSDNFWENVELEIVSRGFPGFNGIKIKPNLKYW
SPFINKKSRNSSKLLNTEFKKVSSRTDAMEEDFREVSEERILEMLTNESS
KKVKSIARSCGFSTNGSKMDVLNRIKEALPTEGSRFKKVFTKLWGHSGGW
LSFSCIHGVVYYVKFLLRAESCRDYVDGILSFKYVPNVIIVDLAHMLARH
ANGSRREDTLRLGKGDQEGNLFYPFDGRIDDPEDPQMVADATNGDLERSF
PWMNPTNHLSDNENIEPRCHPVTGSDQHFCLFDRFHEGNTSSEVEVLRRI
NIIPELHCQINSQVEEQLHGRFRESTKFLNMCLPINHIFLFRSILGHYNM
GKSRRIVDGILKRFQRFDGVHYDLFGRVKIGRPTDHYQINNVSEKNENCT
GIQHSNVPDFSSDSSNEEEISLAIPARQQIQNETNKSVSVIL Run BLAST on NCBI transcript from alignment at sc0000338:42271..45951 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019848 ID=TCONS_00019848|Name=TCONS_00019848|organism=Clytia hemisphaerica|type=transcript|length=3681bp|location=Sequence derived from alignment at sc0000338:42271..45951 (Clytia hemisphaerica)
CATGGAAGATATCGGTGCAGATGAAATTGATGAGAATTTTGATGGAGAAG
TTGATTCCGATAATTTTTGGGAAAACGTTGAGCTTGAAATTGTTAGTAGG
GGTTTTCCGGGTTTCAATGGCatcaaaatcaaaccaaatctcAAATATTG
GTCACCTTTTATCAACAAGAAATCAAGAAACTCCTCTAAACTCTTGAATA
CCGAATTCAAGAAAGTGTCTTCCCGTACAGATGCCATGGAGGAAGATTTT
CGAGAAGTGAGTGAAGAGAGGATTCTGGAAATGCTAACTAATGAAAGttc
taaaaaagtaaaaagcatTGCCAGGTCGTGTGGTTTTAGTACCAATGGGT
CCAAAATGGATGTCTTGAACCGAATCAAAGAGGCGCTCCCAACTGAGGGT
AGcaggtttaaaaaggtttttacaAAGCTTTGGGGTCATTCTGGGGGATG
GTTAAGCTTTTCCTGTATACACGGTGTTGTGTATTATGTTAAATTTCTAT
TGAGAGCCGAGAGCTGCAGGGATTATGTCGATGGTATTCTCTCCTTTAAA
TACGTGCCTAATGTGATCATAGTTGATTTGGCGCATATGCTTGCGCGCCA
CGCCAATGGATCTAGACGGGAAGACACTTTACGGCTGGGAAAAGGTGATC
AGGAAGGGAACTTATTTTATCCCTTCGATGGAAGGATTGATGATCCAGAA
GATCCTCAAATGGTTGCCGATGCAACAAATGGAGATTTGGAGAGATCGTT
TCCTTGGATGAACCCTACCAACCATTTATCTGACAATGAAAACATCGAAC
CTCGTTGTCATCCTGTCACCGGTAGTGATCAACATTTTTGCCTTTTTGAC
AGGTTTCATGAAGGTAACACGAGCTCGGAAGTTGAAGTTTTGAGAAGAAT
AAACATAATCCCCGAGCTTCATTGCCAAATTAATTCTCAAGTGGAAGAGC
AACTTCATGGAAGATTCAGGGAATCGACAAAGTTTTTAAACATGTGTTTA
CCAATTAATCATATTTTCTTATTCCGATCAATTTTGGGGCATTATAATAT
GGGAAAAAGTCGTAGGATTGTGGATGGTATTTTGAAAAGGTTTCAAAGAT
TTGATGGTGTTCATTATGATTTGTTTGGAAGAGTGAAAATTGGGAGGCCT
ACTGACCATTATCAGATAAACAATGTTtcggaaaaaaatgaaaattgtac
aGGCATTCAGCATTCTAACGTGCCTGATTTTTCTTCCGATTCTAGTAACG
AAGAAGAAATCTCCTTAGCGATACCAGCTAGGCAACAAATCCAGAACGAA
ACAAACAAAAGCGTTTCAGTGATTTTGTAGTCGATGAGCGTATAACTAAA
CGCCGATGTTTGGACACGGTAGGTCGAGATTTTGAAGATGGAGAGGGGTT
TGAAAAGCCTCGGTTAGTTTCGGCAGACCCAAATGATGCATGGGAGCTTG
GTGATACAGAGTACGGGACTGTTGATCTTTTGATAAAAGACAGGAGCGCT
ATTCTATCCGGAGGCCCATTTTCTGGAACTTTGATGAATAGCTGtatgaa
ttttatttctcatCCACGAATAACAGATTTTCAAGGTGTTGTCGAAAATC
GATTCTACGGAGGTGATGAAGGCTTTTTACAAATAATTCGTTTGTACAAG
AATCAGTGGGTTGTAGTTAGCAGCAGTTTTCCTGTTATTGTGGCATCCAG
AATTCCCACcgaaaatgtctttgtttttgacCCTTTTATGAAAACATCTC
TCAGAAATAACGATCAGCAGATTAATTATAGAATTTCTTTTGTGAATGCG
GTACGTTCGTTGATTCGATATCCAGGAAAAAGCATCAATTTCCAAGTAAT
TGATGTTCCACAAGCACCAACGGCTAACCTCAGCGCAATGTATTGTTTAT
ACATTGCTCACCTGCTTTCTATAAATAGTGACCcctcaaaatatattttc
aagagCACAGAACTTTCGNCCAGCTAGGCAACAAATCCAGAACGAAACAA
ACAAAAGCGTTTCAGTGATTTTGTAGTCGATGAGCGTATAACTAAACGCC
GATGTTTGGACACGGTAGGTCGAGATTTTGAAGATGGAGAGGGGTTTGAA
AAGCCTCGGTTAGTTTCGGCAGACCCAAATGATGCATGGGAGCTTGGTGA
TACAGAGTACGGGACTGTTGATCTTTTGATAAAAGACAGGAGCGCTATTC
TATCCGGAGGCCCATTTTCTGGAACTTTGATGAATAGCTGtatgaatttt
atttctcatCCACGAATAACAGATTTTCAAGGTGTTGTCGAAAATCGATT
CTACGGAGGTGATGAAGGCTTTTTACAAATAATTCGTTTGTACAAGAATC
AGTGGGTTGTAGTTAGCAGCAGTTTTCCTGTTATTGTGGCATCCAGAATT
CCCACcgaaaatgtctttgtttttgacCCTTTTATGAAAACATCTCTCAG
AAATAACGATCAGCAGATTAATTATAGAATTTCTTTTGTGAATGCGGTAC
GTTCGTTGATTCGATATCCAGGAAAAAGCATCAATTTCCAAGTAATTGAT
GTTCCACAAGCACCAACGGCTAACCTCAGCGCAATGTATTGTTTATACAT
TGCTCACCTGCTTTCTATAAATAGTGACCcctcaaaatatattttcaaga
gCACAGAACTTTCGAGTGCGTTTGTGAGATATATGGAGACGGGTAGTGGG
CTAGATGAAAGTATTTCAATAAATGATGAGGTATCCAATGGTGCTCGGAT
TTTGTTTGAgtggaaagaaattttgtattGTAGCTGTCGCCAGCCCACTG
CTGATATgacgaaattgaaaaaatgtcaTAATTGTCATAATCTTTTTCAT
GAGGACTGCGTAGAGCTCTCGAAAGGAACTTTACCACAAAATCCGCTTTG
CCGTGTTTGTTCGAGAATACCTGATGGttcaaaaattaattctttACCGC
CTGAAatcttacaccaaatttttaAATCAGTTTGCTTAGAAAAGGAAACG
ATGCACGGTGTACTTCCTCTTGTTTGTAAATATTGGTGTGATATTGTGGA
TGATGCATATTTTCGTTGTGAAGTTCAAAAAGCCTTCTTAGACCGAGATT
TCGACGCAGCGAACTGGTAGTTTGTAGTTTATTAATTTGTTAAAATGGTA
TCGATGTACTGTTTTATTTTATCGGTGCAACGTAGACATTTTGTAGTTCA
TTTAGGAGACCCCAGTGGTTTGCGAAATAGTGTgattgggaaattttttt
gcttgaagtCGTGATTCCAAAAAGATTTTGCATTGGTTATGCCGTGAGCT
AGTATCTTAGTATGATACAGGACATGACAAAAACATGGTCTGTGAtgcat
gatttgggctattttaattgaaaaatgGCGTGATGAgcattcttttgatt
tttaagatCGTTCAGAAAGCGAAGAAATTACGTGTGATAGTGttacgacg
ggaaccgtctagggCCTCATTTAAACCAGTGATCGTTGACCTCTTTAAGT
TCCAACACTATCAGCCGACTAACTGTTTTTTACTTTGTTACCTTTTGTTC
CATTATTTATTGAAGAAAGTGGTTGTTTTTTGTCCGAGTGCTCTGCTTGT
CGAGTCGATTTTCAACGTATCAGCAATCGCTCTTTCTTTTCACGCCAGCT
GAGTCCAATCTTTCATCTTTAATCTTTTGAA Coding sequence (CDS) from alignment at sc0000338:42271..45951 >TCONS_00019848 ID=TCONS_00019848|Name=TCONS_00019848|organism=Clytia hemisphaerica|type=CDS|length=1329bp|location=Sequence derived from alignment at sc0000338:42271..45951 (Clytia hemisphaerica)
ATGGAAGATATCGGTGCAGATGAAATTGATGAGAATTTTGATGGAGAAGT
TGATTCCGATAATTTTTGGGAAAACGTTGAGCTTGAAATTGTTAGTAGGG
GTTTTCCGGGTTTCAATGGCatcaaaatcaaaccaaatctcAAATATTGG
TCACCTTTTATCAACAAGAAATCAAGAAACTCCTCTAAACTCTTGAATAC
CGAATTCAAGAAAGTGTCTTCCCGTACAGATGCCATGGAGGAAGATTTTC
GAGAAGTGAGTGAAGAGAGGATTCTGGAAATGCTAACTAATGAAAGttct
aaaaaagtaaaaagcatTGCCAGGTCGTGTGGTTTTAGTACCAATGGGTC
CAAAATGGATGTCTTGAACCGAATCAAAGAGGCGCTCCCAACTGAGGGTA
GcaggtttaaaaaggtttttacaAAGCTTTGGGGTCATTCTGGGGGATGG
TTAAGCTTTTCCTGTATACACGGTGTTGTGTATTATGTTAAATTTCTATT
GAGAGCCGAGAGCTGCAGGGATTATGTCGATGGTATTCTCTCCTTTAAAT
ACGTGCCTAATGTGATCATAGTTGATTTGGCGCATATGCTTGCGCGCCAC
GCCAATGGATCTAGACGGGAAGACACTTTACGGCTGGGAAAAGGTGATCA
GGAAGGGAACTTATTTTATCCCTTCGATGGAAGGATTGATGATCCAGAAG
ATCCTCAAATGGTTGCCGATGCAACAAATGGAGATTTGGAGAGATCGTTT
CCTTGGATGAACCCTACCAACCATTTATCTGACAATGAAAACATCGAACC
TCGTTGTCATCCTGTCACCGGTAGTGATCAACATTTTTGCCTTTTTGACA
GGTTTCATGAAGGTAACACGAGCTCGGAAGTTGAAGTTTTGAGAAGAATA
AACATAATCCCCGAGCTTCATTGCCAAATTAATTCTCAAGTGGAAGAGCA
ACTTCATGGAAGATTCAGGGAATCGACAAAGTTTTTAAACATGTGTTTAC
CAATTAATCATATTTTCTTATTCCGATCAATTTTGGGGCATTATAATATG
GGAAAAAGTCGTAGGATTGTGGATGGTATTTTGAAAAGGTTTCAAAGATT
TGATGGTGTTCATTATGATTTGTTTGGAAGAGTGAAAATTGGGAGGCCTA
CTGACCATTATCAGATAAACAATGTTtcggaaaaaaatgaaaattgtaca
GGCATTCAGCATTCTAACGTGCCTGATTTTTCTTCCGATTCTAGTAACGA
AGAAGAAATCTCCTTAGCGATACCAGCTAGGCAACAAATCCAGAACGAAA
CAAACAAAAGCGTTTCAGTGATTTTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019848-exon-sc0000338-1491911889:42271..45951 | TCONS_00019848-exon-sc0000338-1491911889:42271..45951 | Clytia hemisphaerica | exon |
| TCONS_00019848-exon-sc0000338-1510915933:42271..45951 | TCONS_00019848-exon-sc0000338-1510915933:42271..45951 | Clytia hemisphaerica | exon |
| TCONS_00019848-exon-sc0000338-1575043694:42271..45951 | TCONS_00019848-exon-sc0000338-1575043694:42271..45951 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000338 | supercontig | sc0000338:42271..45951 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR003034 | SAP_dom |
Blast
The following BLAST results are available for this feature:
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