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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019847 ID=TCONS_00019847|Name=TCONS_00019847|organism=Clytia hemisphaerica|type=transcript|length=1054bp
TCGAAAAGGAAATATGCATTTGAGAGTTTTTGATGATCTAACTTGAGGTC
GATCACGAATTGGAGAGATTGAATATAGGAATTCAAAGAATTATTCTGAA
GAGTGTGTCCTCGAAGATGCATACAAATGTCGAAACCGAGCAAAAGAGAG
TCGTTGAAATTATGTATACCATCCCTGCTCTCTTGATATCGATAAAATAT
CTTACAACTAGAACAAAACCGGTGATAGGTGACGAAACCTGTGTAAACTT
TATTTGCAGTTATCAGTCGTGCATTTCTAGATGCTATTTTAGGAGCAGAT
AAATCTTGGTTACAGTAATAACACACTGTTTCGGAAGGAAAAAGCTCTTT
CGGGGTTTCAGAGATGTCGATATGCCTTTTCTCAGTCAAATCAACGTCTG
AATAAGCTTTTTCACTACGAATGTATTTACACATGCGAGAATAATCGATT
TCTGGAAAATTGTCGTTAGAAGGCTCCGATTTATCACTGAAGCCAAGCTG
CCCGTTCTCTTCGCATGTAGGTACAGGCTCTTCAGTGACTTCATTAACTT
CAGGACAAATTGGAGATAACAAATTCTCAATACTCAAATAACATAATGCC
AATGCTTTGTGGACACAAATGTATGATCGACGAGTACAACCACAATCCAA
TTGCCCGGTCGAGCGATTATAATTAACTACAAACCTTTTCAGCACAGCAT
TATAATGCTTTTTATGCGTGAAAACAGAAATATGGATGTAATTTGGAAAG
ATCCAGGGAACAAGTACTGGCTTAAGAAGAGAATTGGCAGCATGCAACAA
GTTTACACATTCTTCCACTGTTTCCTCTTTCAAAGTGGAAGAAATCATTT
CTCCATCGGCGGCTTCTCGAATAGCTTCCTCACTCAATTGAGGGAATTGT
GGGATCTCAGCAGAGTCTACATCACGAATATGTTTACAAACTAACTGGTT
GAGATTACTCAAACTTGAGACACCAAAATCAGTGTTACACCTCTCAGACT
CACAATACACCTTTGGAGGGGTAGAATGTATCAACCTTTGTACGGGTATT
GGAT Run BLAST on NCBI protein sequence of TCONS_00019847-protein >TCONS_00019847-protein ID=TCONS_00019847-protein|Name=TCONS_00019847-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
PIPVQRLIHSTPPKVYCESERCNTDFGVSSLSNLNQLVCKHIRDVDSAEI
PQFPQLSEEAIREAADGEMISSTLKEETVEECVNLLHAANSLLKPVLVPW
IFPNYIHISVFTHKKHYNAVLKRFVVNYNRSTGQLDCGCTRRSYICVHKA
LALCYLSIENLLSPICPEVNEVTEEPVPTCEENGQLGFSDKSEPSNDNFP
EIDYSRMCKYIRSEKAYSDVDLTEKRHIDISETPKELFPSETVCYYCNQD
LSAPKIASRNARLITANKVYTGFVTYHRFCSSCKIFYRYQESRDGIHNFN
DSLLLGFDICMHLRGHTLQNNSLNSYIQSLQFVIDLKLDHQKLSNAYFLF Run BLAST on NCBI transcript from alignment at sc0000338:41115..42168 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019847 ID=TCONS_00019847|Name=TCONS_00019847|organism=Clytia hemisphaerica|type=transcript|length=1054bp|location=Sequence derived from alignment at sc0000338:41115..42168 (Clytia hemisphaerica)
ATCCAATACCCGTACAAAGGTTGATACATTCTACCCCTCCAAAGGTGTAT
TGTGAGTCTGAGAGGTGTAACACTGATTTTGGTGTCTCAAGTTTGAGTAA
TCTCAACCAGTTAGTTTGTAAACATATTCGTGATGTAGACTCTGCTGAGA
TCCCACAATTCCCTCAATTGAGTGAGGAAGCTATTCGAGAAGCCGCCGAT
GGAGAAATGATTTCTTCCACTTTGAAAGAGGAAACAGTGGAAGAATGTGT
AAACTTGTTGCATGCTGCCAATTCTCTTCTTAAGCCAGTACTTGTTCCCT
GGATCTTTCCAAATTACATCCATATTTCTGTTTTCACGCATAAAAAGCAT
TATAATGCTGTGCTGAAAAGGTTTGTAGTTAATTATAATCGCTCGACCGG
GCAATTGGATTGTGGTTGTACTCGTCGATCATACATTTGTGTCCACAAAG
CATTGGCATTATGTTATTTGAGTATTGAGAATTTGTTATCTCCAATTTGT
CCTGAAGTTAATGAAGTCACTGAAGAGCCTGTACCTACATGCGAAGAGAA
CGGGCAGCTTGGCTTCAGTGATAAATCGGAGCCTTCTAACGACAATTTTC
CAGAAATCGATTATTCTCGCATGTGTAAATACATTCGTAGTGAAAAAGCT
TATTCAGACGTTGATTTGACTGAGAAAAGGCATATCGACATCTCTGAAAC
CCCGAAAGAGCTTTTTCCTTCCGAAACAGTGTGTTATTACTGTAACCAAG
ATTTATCTGCTCCTAAAATAGCATCTAGAAATGCACGACTGATAACTGCA
AATAAAGTTTACACAGGTTTCGTCACCTATCACCGGTTTTGTTCTAGTTG
TAAGATATTTTATCGATATCAAGAGAGCAGGGATGGTATACATAATTTCA
ACGACTCTCTTTTGCTCGGTTTCGACATTTGTATGCATCTTCGAGGACAC
ACTCTTCAGAATAATTCTTTGAATTCCTATATTCAATCTCTCCAATTCGT
GATCGACCTCAAGTTAGATCATCAAAAACTCTCAAATGCATATTTCCTTT
TCGA Coding sequence (CDS) from alignment at sc0000338:41115..42168 >TCONS_00019847 ID=TCONS_00019847|Name=TCONS_00019847|organism=Clytia hemisphaerica|type=CDS|length=1050bp|location=Sequence derived from alignment at sc0000338:41115..42168 (Clytia hemisphaerica)
CCAATACCCGTACAAAGGTTGATACATTCTACCCCTCCAAAGGTGTATTG
TGAGTCTGAGAGGTGTAACACTGATTTTGGTGTCTCAAGTTTGAGTAATC
TCAACCAGTTAGTTTGTAAACATATTCGTGATGTAGACTCTGCTGAGATC
CCACAATTCCCTCAATTGAGTGAGGAAGCTATTCGAGAAGCCGCCGATGG
AGAAATGATTTCTTCCACTTTGAAAGAGGAAACAGTGGAAGAATGTGTAA
ACTTGTTGCATGCTGCCAATTCTCTTCTTAAGCCAGTACTTGTTCCCTGG
ATCTTTCCAAATTACATCCATATTTCTGTTTTCACGCATAAAAAGCATTA
TAATGCTGTGCTGAAAAGGTTTGTAGTTAATTATAATCGCTCGACCGGGC
AATTGGATTGTGGTTGTACTCGTCGATCATACATTTGTGTCCACAAAGCA
TTGGCATTATGTTATTTGAGTATTGAGAATTTGTTATCTCCAATTTGTCC
TGAAGTTAATGAAGTCACTGAAGAGCCTGTACCTACATGCGAAGAGAACG
GGCAGCTTGGCTTCAGTGATAAATCGGAGCCTTCTAACGACAATTTTCCA
GAAATCGATTATTCTCGCATGTGTAAATACATTCGTAGTGAAAAAGCTTA
TTCAGACGTTGATTTGACTGAGAAAAGGCATATCGACATCTCTGAAACCC
CGAAAGAGCTTTTTCCTTCCGAAACAGTGTGTTATTACTGTAACCAAGAT
TTATCTGCTCCTAAAATAGCATCTAGAAATGCACGACTGATAACTGCAAA
TAAAGTTTACACAGGTTTCGTCACCTATCACCGGTTTTGTTCTAGTTGTA
AGATATTTTATCGATATCAAGAGAGCAGGGATGGTATACATAATTTCAAC
GACTCTCTTTTGCTCGGTTTCGACATTTGTATGCATCTTCGAGGACACAC
TCTTCAGAATAATTCTTTGAATTCCTATATTCAATCTCTCCAATTCGTGA
TCGACCTCAAGTTAGATCATCAAAAACTCTCAAATGCATATTTCCTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019847-exon-sc0000338-1491911889:41115..42168 | TCONS_00019847-exon-sc0000338-1491911889:41115..42168 | Clytia hemisphaerica | exon |
| TCONS_00019847-exon-sc0000338-1510915933:41115..42168 | TCONS_00019847-exon-sc0000338-1510915933:41115..42168 | Clytia hemisphaerica | exon |
| TCONS_00019847-exon-sc0000338-1575043694:41115..42168 | TCONS_00019847-exon-sc0000338-1575043694:41115..42168 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000338 | supercontig | sc0000338:41115..42168 . |
Blast
The following BLAST results are available for this feature:
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