TCONS_00019841 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019841
Unique NameTCONS_00019841
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019841 ID=TCONS_00019841|Name=TCONS_00019841|organism=Clytia hemisphaerica|type=transcript|length=457bp
TGAATCAATTTCTGACACtcttaagtgctttaaagtgaTAAAATAGATGT
TTCATTATATATAATCTAGTCCAATAAGCTATCCTAATGgcaaaattgag
caaaaatttgggtttttaagggattttttatcaaaaatacccCCAAAATA
GCGGAAAATAGCGatttttgagctttcataactTTTAAAGGCCAATTCAa
gactttgaaatttggcaaaattaaaAACGAACAGAAAGATAGCCTGTACA
TTGGAAATTAAACAACAAAGATttgtacaaaaacaaaaagaagtgATAGC
CAGCAATGTTGATGAAGAAGATGCAGCCAAGCTAGCAACCAGCAACAAAG
TTATCGGGTGTGTATCTGCTTGCAAAAAATCCCACCAAGGGCCAATCACT
ACAATTGAAGAGCTTGACACCCTGGTTCAAGACTGGAATGGTACAGAAAA
AGGGCTT
Run BLAST on NCBI

transcript from alignment at sc0000338:3486..3942

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019841 ID=TCONS_00019841|Name=TCONS_00019841|organism=Clytia hemisphaerica|type=transcript|length=457bp|location=Sequence derived from alignment at sc0000338:3486..3942 (Clytia hemisphaerica)
AAGCCCTTTTTCTGTACCATTCCAGTCTTGAACCAGGGTGTCAAGCTCTT
CAATTGTAGTGATTGGCCCTTGGTGGGATTTTTTGCAAGCAGATACACAC
CCGATAACTTTGTTGCTGGTTGCTAGCTTGGCTGCATCTTCTTCATCAAC
ATTGCTGGCTATcacttctttttgtttttgtacaaATCTTTGTTGTTTAA
TTTCCAATGTACAGGCTATCTTTCTGTTCGTTtttaattttgccaaattt
caaagtctTGAATTGGCCTTTAAAagttatgaaagctcaaaaatCGCTAT
TTTCCGCTATTTTGGgggtatttttgataaaaaatcccttaaaaacccaa
atttttgctcaattttgcCATTAGGATAGCTTATTGGACTAGATTATATA
TAATGAAACATCTATTTTAtcactttaaagcacttaagaGTGTCAGAAAT
TGATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011160XLOC_011160Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019841-exon-sc0000338-1491911889:3486..3942TCONS_00019841-exon-sc0000338-1491911889:3486..3942Clytia hemisphaericaexon
TCONS_00019841-exon-sc0000338-1510915933:3486..3942TCONS_00019841-exon-sc0000338-1510915933:3486..3942Clytia hemisphaericaexon
TCONS_00019841-exon-sc0000338-1575043694:3486..3942TCONS_00019841-exon-sc0000338-1575043694:3486..3942Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000338supercontigsc0000338:3486..3942 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.63069	0.406895	0	0.294124	2.56283	1.16307	3.41963	1.68697	3.03304	1.46086	2.32853	1.7799	2.2361	1.77348	2.21047	1.26217	2.06127	1.7612	1.6652	3.42447	3.00637	1.44827	0	0.9	3.27632	4.30996	2.11634	2.86433	2.0365	1.15926
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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