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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019837 ID=TCONS_00019837|Name=TCONS_00019837|organism=Clytia hemisphaerica|type=transcript|length=751bp
TAAACTTTTAGCGTGAGCGAAATTGGAGACGGAGGAAAATTGGAGACCAT
TGTCGAAATCAAGATTGATCTGGTCAAACTACTGAGACTAGACAGAGATT
TTGACAACTACCATGTTCAATCAGAAGTTGCATATCAGCTAGGACACACA
GGAACTTTTGTTATAACTTACAAAAATGGTACTCCAGTGAAGAACTCACC
AAACACCAGAGgtcttgatttttggattggaaaaacactttttagGGCTA
TAGCCATCGAGGCTTACAAAGTCTTTAAGCCAACCTCCTATAATGTAATC
AAAGCTGATTACATTATAGGAGATGACACTGATGATGATGAATATCCCGA
GATCGATCAAGCAGACAAGTTACCTTTAAGATTAAATGTTCCAGAAGATG
GTTTTGGGTCCCTGTCAGGGAAATTGAAAGACCAAGCCGACAAACTGGAT
AAAATTGAAGAATTATTAACAGCAAACAAATCATCAGTTCCTGAAGATCA
AATAGTCTCCAAGGAAGATTTGGCTGTCGTGTTTAAGTGCCTGATTTGTC
ACGAGTCGCGACCAAAGAAGTACTggtcttgttttttttgtggaaTTTTC
TTAGGTTGTTTTGCTTGTGCAGAAAAATTAGACAAATGCCCGATATGCAG
AACTGAATTTAAATGCCGTGTCTGCACTGTCAAAATGGTCAAACACCCCC
TTATTCTGCCTGGAATAGAGCAGTTTATCCCGGAAGCACCACCAATCTCA
C Run BLAST on NCBI transcript from alignment at sc0000338:51301..55081- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019837 ID=TCONS_00019837|Name=TCONS_00019837|organism=Clytia hemisphaerica|type=transcript|length=3781bp|location=Sequence derived from alignment at sc0000338:51301..55081- (Clytia hemisphaerica)
TAAACTTTTAGCGTGAGCGAAATTGGAGACGGAGGAAAATTGGAGACCAT
TGTCGAAATCAAGATTGATCTGGTCAAACTACTGAGACTAGACAGAGATT
TTGACAACTACCATGTTCAATCAGAAGTTGCATATCAGCTAGGACACACA
GGAACTTTTGTTATAACTTACAAAAATGGTACTCCAGTGAAGAACTCACC
AAACACCAGAGGTAAAGTGGCTAGTTTGAAACGCATTTCACAACAAATGT
CAGCTTTAATTACTTTTTTAAAGGTCTAAATCTATACATGTGCTTTAGTA
TTCTGGATCGTGTAATACTTGTATTATATATTACACCTATATCACTCATG
GTATAAGAGTTTTCTTTTCAAGAGTTACAGGACTATGATTTGTTTGACCT
GCATTACCAACTAGGAGTAAACTTAGTGAAATATCTTGGTTGTGGAAAAA
GCAAGTTAGGTTATGTATAGGTTCGTTGGGATGCTCTTTTTGCGGGCTAT
CTTTTCAGTATGCCACTTTTTTGGATTAGAAAAATTGACAGCAGTCTAAA
GGATATCATTCCAAAGGGAATTAGTTCAAGGGTGGCATCACAACTCGGTC
TTTTAAGTTAAGGTGCACCTTAATTTTTGAGTTTCATAACTTCGTTTTTT
AAGGTATACATTAAATGTTTTACTTAATTTTTTACCCAACCAAGTTGGTC
AATCATACTGTTATGTGCATGCATAATTTATTGTTTTTTAAACTGTTAAC
AATTCAACACTGCATGGCTTTTTTAGAAGTCTCAAAAACCTTTAGAAGTC
TCCAGACGTTGCTTTTCTTTGAGCCTATAGATTCATTATATCCTAAAGCA
AGAAACTAAAGAAAACCTAAAGTGGTCTAAATTCATGAATACTTTTTAAC
TTGCATTCAAGTTATTTTAAACCCAGATAATAGTCTTTTTTTTCTCATAC
CTATATATTATCATCTAAGATTAGAGAAGCAATAATAACCTGTGGCAATT
GAATCTTTAAAATTTTCCACTTCTCACTATGTAAAAATAAATTTAACAAA
AATGGATANAAATCTTTAAAAATTTCCACTTCTCACTATGTAAAAATAAT
CTAGTCCAGTAGAATTTAGGGTCAACCTAGAAAAATTTATTATAAAAGGT
TTCTATTATACCGTTGGAAAGATAATTTTATCAGCTTTCAAATGAGGGAT
AGAGTCAATTTTTTTGTCATGGGGAAAAAAAGTTCTGGACCAAAGAGTAA
GAGGGGGATTTCTAAGCAAAAAGCAGTGACCCATTAAAAATGTCAATTTA
AAAAGTTTTTAAACAGCTAAATTTTGATGGTTCCATCTGATAGAGCTGGA
AGAGAAGATGTCCAAAATGGGGTCATTTGTAAAATTTGGTTAACCAAACC
CTGAGAAAATAGCCATAATGGCTGAAAAATCGTCATTTTTAATGCTGACG
TCAACACTTTAAAAATTAATTTCAGCACTCAAAACCACTTTCAACGGATG
CGTCTCGAAGAGTACTATCGAATAGAGGTATAGTTTGTTGAGGTACCATG
GCGAGATCTTGAGATATTTGCATTTCAAATTTTGCTGATTCAGCATATTT
GAGCGATTTTGATGGTTTTTTGCTGAGTCATCAAGTGGTTTTGAGTGCTG
AAATTAATTTTTAAAGTGTTGACGTCAGTATTAAAAATGACGATTTTTCA
GCCATTATGGCTATTTTCTCAGGGTTTGGTTAACCAAATTTTACAAATGA
CCCCATTTTGGACATCTTCTCTTCCAGCTCTATCAGATGGAACCATCAAA
ATTAGCTGTTTAAAAACTTTTAAAATTGATATTTTTAACGCGAATTTCTA
CTGGACTATTCCGCTCTATTTGATTGCAAATAAAATTCCATGACACAGCA
TTCAAAAAGTAGAATGATTGGGCTTTCCAAATATAACATTATTATACACT
ACTAGCCGGTACCCGGCGTCGCACGCCGGTTTAGCCAAAATTACAGGGAA
AAATTATCTTCAAAGTTTGACTCTGTCCCTCCCAAGTCACGTATCTTTTA
ACCATATTTTGAAAAAGATTTTTAAATTGTTGCTAAAATGATCAGAAAGG
GCGTTGTTCAAACTATACCATACCGGCGACCTGCGACGTCCTAAGGCTTT
GCAATTAGATTTTTTTCTCGCTTCGCTCGCTTTACATTTGCCGTACTTGT
TGATGATTATGAAAACTTTGATGTCAAGATAAGAGGGGTGAAATTATAGA
CATGACACGAGATTCGTCGAAAAAAGGCAGCCCGTGGGTACTTAGGCAAG
AGAAGGATACGGGCATGAGCCGTTCTTAAGGATGCCTTTTTAAAAATGGC
AGTCCCTGTAAGGGTTGGAAAAATTAGAAAATCAAACTTCAGTCCCACTA
AGAGTCGGTAAAAATAGGGAAAAAAATTCAACTTTTTACCCCCCAGAAAG
ATAGAAATTTAATCAAATTAGTCCCAATAAGGGAAGTAAACTTCACAAAA
TTTCGCTTGTTTCTTCTTCTCTCTAGTCTCACTAAGGGTCCAAGGGCCAA
AAGTCAGGCAGCTAGGCACCTTCGTCTTAACTTTTCGAATTTAACAATGA
ATGACTTAGATTTACAGCAATATAATTATCGACATAGATGTTTATAAGTC
CCTTTTTACGAAGAAAGATCTCTTGTTTTTACCGCCTTTCGAGTGTATTG
TTAATGTTGCTGTTTAGTTGTTCCAACAAACTTGTCTTGTGATTCTTATG
TTTTTGTTTTAAATGTTTTAAATTTGTTCTTTTCTAAAACAGATTTGGTT
TGAAAGATTTTCTTTTGTTTTGTTTTGAAACGAATTCGAATGTCTCAAAT
CAAATAAGGTCGTTAATTACATTCGAAAGCATAAAACAAAAGAATAGAGA
GAAAAAAAGAAAAAAACATAAGAGGCGGGCTCGGGCACGTCTGGGCAGAT
ATTATAATCTATCAATCAAAACAAACTTATCGAACAACTCAAAGTCTTTA
TAAAACGGCGCGAATCTGATTTAACACATTTTTGGAGCAAGAAGCAAAAG
TCATCTTTTAAAAGAACAAAACTTTGCTTGCGAAAACGAAAGTGACACAC
AAACAAACAAAATGACATACAGACTACGGCTATTAATATATAGATAAAAC
TCAATTCGAAGAAAGCAAATTAAAGTATAATTGACCAACTTGGTTGTGTA
AAAAAATTTGCCTGAAAATATTTTTTTCTCTTTTTCTCCAGGTCTTGATT
TTTGGATTGGAAAAACACTTTTTAGGGCTATAGCCATCGAGGCTTACAAA
GTCTTTAAGCCAACCTCCTATAATGTAATCAAAGCTGATTACATTATAGG
AGATGACACTGATGATGATGAATATCCCGAGATCGATCAAGCAGACAAGT
TACCTTTAAGATTAAATGTTCCAGAAGATGGTTTTGGGTCCCTGTCAGGG
AAATTGAAAGACCAAGCCGACAAACTGGATAAAATTGAAGAATTATTAAC
AGCAAACAAATCATCAGTTCCTGAAGATCAAATAGTCTCCAAGGAAGATT
TGGCTGTCGTGTTTAAGTGCCTGATTTGTCACGAGTCGCGACCAAAGAAG
TACTGGTCTTGTTTTTTTTGTGGAATTTTCTTAGGTTGTTTTGCTTGTGC
AGAAAAATTAGACAAATGCCCGATATGCAGAACTGAATTTAAATGCCGTG
TCTGCACTGTCAAAATGGTCAAACACCCCCTTATTCTGCCTGGAATAGAG
CAGTTTATCCCGGAAGCACCACCAATCTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019837-exon-sc0000338-1575043694:54871..55081 | TCONS_00019837-exon-sc0000338-1575043694:54871..55081 | Clytia hemisphaerica | exon |
| TCONS_00019837-exon-sc0000338-1575043694:51301..51840 | TCONS_00019837-exon-sc0000338-1575043694:51301..51840 | Clytia hemisphaerica | exon |
| TCONS_00019837-exon-sc0000338-1510915933:54871..55081 | TCONS_00019837-exon-sc0000338-1510915933:54871..55081 | Clytia hemisphaerica | exon |
| TCONS_00019837-exon-sc0000338-1510915933:51301..51840 | TCONS_00019837-exon-sc0000338-1510915933:51301..51840 | Clytia hemisphaerica | exon |
| TCONS_00019837-exon-sc0000338-1491911889:54871..55081 | TCONS_00019837-exon-sc0000338-1491911889:54871..55081 | Clytia hemisphaerica | exon |
| TCONS_00019837-exon-sc0000338-1491911889:51301..51840 | TCONS_00019837-exon-sc0000338-1491911889:51301..51840 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000338 | supercontig | sc0000338:51301..55081 - |
Blast
The following BLAST results are available for this feature:
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