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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019826 ID=TCONS_00019826|Name=TCONS_00019826|organism=Clytia hemisphaerica|type=transcript|length=2077bp
TAAActgaacattttgaatttcccagaGGCACACAAAGAGATTATATTTT
GGAGAGATAATATTTCTATGTTAAACAAAAGGAGCACAATTAGCATTTGT
CAAAGCAAAACTGTTATAAAGTCTGATGCAAGCGATCATGGTATAGGTGC
TATTTTATTTGAAGCAAGTGGAAGAAAAGAATGTTTTCGTATGTTTGACG
AAGGAGAAGTATCTAAAAACTCGACTTGGCGTGAACTTGAAGCTATTCGA
TTTAGTCTTCAATCTTTTGCACCTAAAATATCAGGGAAGTCTATTTCTTG
GCAAACCGATAATATGGCAGCAAAATATATTTGCTCGAGTGGTAGTAACA
AATCCGATTTTAACGATCTATCAAGGCTTTTCAGTATAGACTTAGAAGTG
AGCTGGATATCTAGACGTTTCAATGCCTCTGCTGACTACATTTCTAAGTT
AGTAGACACCGATGATTGGGAGATCACAGACGAATTCTTTGAACTTATAG
ATGGTTTATGGGGTCCCCTGAATATTGATAGATTTGCTAGTTATAATAAC
ACTAAATGTGAGCGATTCAACTCGAAATTCTACGTTCCTGGGACGGAAGC
GGTGGATACATTTACGCAGTATTGGCGTTTTGAAAACAACCTTTAGGTTC
CTCCGGCTAATTTAATCACCCGGGTGCTGAGAACTATCATATCTACGCAT
GGTATTAGAGGGGTTTTGATAATTCCGTATTGGCGTTCCGCTCCATTTTG
GTCACTGCTTCAAAACGGAccgatattttcaagttttgtaGTCGATCATA
TGGTTTTCAAAGATACTGCTGGTATTCTGAAGTTGGGCAACTACAAGTAT
TCCCTTCTCGGTTCTCCTCATTATCGTGGGAGTATTGTGGCATTTTTAAT
AAAGAGTTGAGTTTTGGGTTCTGGGCCTTATTGGATAAGCTGTCCCACCT
TCCCAAGTACTTTCGCCCAGGTGGGCAGGGTTAGCCTTAGAGGTAACCCA
TTATTCATTAGATTTTTGGACCTAGATGGGGTCCTCCTATACTCAACCGG
GttgagagaaaaagaaagtGTAACTGGGTTACACTGTGTAACTGGGTTAC
ACCGTGGCTGGGCCACTTGCTCAGAAGGTTTTGTAAGAAAAATTGGCCTA
ATCAGGTTATTTAACCCAGGCTGATTAATTCTGCACTTTTAGGATCCAGC
TCGCTTCAAATCGTTAACCAGGTACAGGACGACCACCTGAAGGAACTAGC
GCACGGTTTACAAGACGTGTTGTCGAAATCAAGAGCGAATAACACAATAA
AGAAATATGCTTCAAGCGTTGGTCAAACTGGAGTNAGAGTCTTGTGAAAC
GAATTGGGGTGAATGAAAAGCTATTTGGGACCCACAGCATGCGTCGTGGA
GGAGCCACATGTGCCGCCAACAACGGGGTAAAGGATCGTCTTTTCCAGAA
ACANTCTGAAGGAACTAGCGCACGGTTTACAAGACGTGTTGTCGAAATCA
AGAGCGAGTAACACAATAAAGAAATATGCTACCTACTTCAAGCGTTGGTC
AAACTGGAGTGCAAAGTTCGATGAAGTTGTTGAATTCCCTGCCAAAGACG
TACACGTGGTGCTGTTTTTCGTCAGCCTCATACAGTCAGGAATGTCATTC
TCTGTGATCGAAAGCTGTTTTTACGCAATCAAACACACTCATAATGTCAA
TAACCAACCTGACCCAACAGATTCAGTATTGGCCAGTTATGCCTTAGAGG
CAGCAAAACGTACTTGTTCCAAGCNATATGATAATTATTTAGAGTGCATT
TGATGTCTAATTCTATGAGGCTAGGCCTCTGATGTTATAAAGATGGCTAT
GTGGATGATAATCTGAAACAGCTtatgtctgttttttttttgggggctAG
GCCTCTAAAAGTTTTACAGTATATGATGATTATTTAGAGCATTTGATGTC
TAATTCTGCGAGGCTAGGCTCTGGTgttatttcttatattttcaaTCGCG
TTCTTCTGTTACAACTATTTACAGGGCTTTCTAGACGACCCACTAACGTA
ATAAGAAGAGATGAaagtaaaatgata Run BLAST on NCBI protein sequence of TCONS_00019826-protein >TCONS_00019826-protein ID=TCONS_00019826-protein|Name=TCONS_00019826-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
KLNILNFPEAHKEIIFWRDNISMLNKRSTISICQSKTVIKSDASDHGIGA
ILFEASGRKECFRMFDEGEVSKNSTWRELEAIRFSLQSFAPKISGKSISW
QTDNMAAKYICSSGSNKSDFNDLSRLFSIDLEVSWISRRFNASADYISKL
VDTDDWEITDEFFELIDGLWGPLNIDRFASYNNTKCERFNSKFYVPGTEA
VDTFTQYWRFENNL Run BLAST on NCBI transcript from alignment at sc0000338:232115..234316+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019826 ID=TCONS_00019826|Name=TCONS_00019826|organism=Clytia hemisphaerica|type=transcript|length=2202bp|location=Sequence derived from alignment at sc0000338:232115..234316+ (Clytia hemisphaerica)
TAAActgaacattttgaatttcccagaGGCACACAAAGAGATTATATTTT
GGAGAGATAATATTTCTATGTTAAACAAAAGGAGCACAATTAGCATTTGT
CAAAGCAAAACTGTTATAAAGTCTGATGCAAGCGATCATGGTATAGGTGC
TATTTTATTTGAAGCAAGTGGAAGAAAAGAATGTTTTCGTATGTTTGACG
AAGGAGAAGTATCTAAAAACTCGACTTGGCGTGAACTTGAAGCTATTCGA
TTTAGTCTTCAATCTTTTGCACCTAAAATATCAGGGAAGTCTATTTCTTG
GCAAACCGATAATATGGCAGCAAAATATATTTGCTCGAGTGGTAGTAACA
AATCCGATTTTAACGATCTATCAAGGCTTTTCAGTATAGACTTAGAAGTG
AGCTGGATATCTAGACGTTTCAATGCCTCTGCTGACTACATTTCTAAGTT
AGTAGACACCGATGATTGGGAGATCACAGACGAATTCTTTGAACTTATAG
ATGGTTTATGGGGTCCCCTGAATATTGATAGATTTGCTAGTTATAATAAC
ACTAAATGTGAGCGATTCAACTCGAAATTCTACGTTCCTGGGACGGAAGC
GGTGGATACATTTACGCAGTATTGGCGTTTTGAAAACAACCTTTAGGTTC
CTCCGGCTAATTTAATCACCCGGGTGCTGAGAACTATCATATCTACGCAT
GGTATTAGAGGGGTTTTGATAATTCCGTATTGGCGTTCCGCTCCATTTTG
GTCACTGCTTCAAAACGGAccgatattttcaagttttgtaGTCGATCATA
TGGTTTTCAAAGATACTGCTGGTATTCTGAAGTTGGGCAACTACAAGTAT
TCCCTTCTCGGTTCTCCTCATTATCGTGGGAGTATTGTGGCATTTTTAAT
AAAGAGTTGAGTTTTGGGTTCTGGGCCTTATTGGATAAGCTGTCCCACCT
TCCCAAGTACTTTCGCCCAGGTGGGCAGGGTTNCGGTTCTCCTCATTATC
GTGGGAGTATTGTGGCATTTTTAATAAAGAGTTGAGTTTTGGGTTCTGGG
CCTTATTGGATAAGCTGTCCCACCTTCCTAAGTATTTTCGCCCAGGTGGG
CAGGGTTAGCCTTAGAGGTAACCCATTATTCATTAGATTTTTGGACCTAG
ATGGGGTCCTCCTATACTCAACCGGGttgagagaaaaagaaagtGTAACT
GGGTTACACTGTGTAACTGGGTTACACCGTGGCTGGGCCACTTGCTCAGA
AGGTTTTGTAAGAAAAATTGGCCTAATCAGGTTATTTAACCCAGGCTGAT
TAATTCTGCACTTTTAGGATCCAGCTCGCTTCAAATCGTTAACCAGGTAC
AGGACGACCACCTGAAGGAACTAGCGCACGGTTTACAAGACGTGTTGTCG
AAATCAAGAGCGAATAACACAATAAAGAAATATGCTTCAAGCGTTGGTCA
AACTGGAGTNAGAGTCTTGTGAAACGAATTGGGGTGAATGAAAAGCTATT
TGGGACCCACAGCATGCGTCGTGGAGGAGCCACATGTGCCGCCAACAACG
GGGTAAAGGATCGTCTTTTCCAGAAACANTCTGAAGGAACTAGCGCACGG
TTTACAAGACGTGTTGTCGAAATCAAGAGCGAGTAACACAATAAAGAAAT
ATGCTACCTACTTCAAGCGTTGGTCAAACTGGAGTGCAAAGTTCGATGAA
GTTGTTGAATTCCCTGCCAAAGACGTACACGTGGTGCTGTTTTTCGTCAG
CCTCATACAGTCAGGAATGTCATTCTCTGTGATCGAAAGCTGTTTTTACG
CAATCAAACACACTCATAATGTCAATAACCAACCTGACCCAACAGATTCA
GTATTGGCCAGTTATGCCTTAGAGGCAGCAAAACGTACTTGTTCCAAGCN
ATATGATAATTATTTAGAGTGCATTTGATGTCTAATTCTATGAGGCTAGG
CCTCTGATGTTATAAAGATGGCTATGTGGATGATAATCTGAAACAGCTta
tgtctgttttttttttgggggctAGGCCTCTAAAAGTTTTACAGTATATG
ATGATTATTTAGAGCATTTGATGTCTAATTCTGCGAGGCTAGGCTCTGGT
gttatttcttatattttcaaTCGCGTTCTTCTGTTACAACTATTTACAGG
GCTTTCTAGACGACCCACTAACGTAATAAGAAGAGATGAaagtaaaatga
ta Coding sequence (CDS) from alignment at sc0000338:232115..234316+ >TCONS_00019826 ID=TCONS_00019826|Name=TCONS_00019826|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at sc0000338:232115..234316+ (Clytia hemisphaerica)
AAActgaacattttgaatttcccagaGGCACACAAAGAGATTATATTTTG
GAGAGATAATATTTCTATGTTAAACAAAAGGAGCACAATTAGCATTTGTC
AAAGCAAAACTGTTATAAAGTCTGATGCAAGCGATCATGGTATAGGTGCT
ATTTTATTTGAAGCAAGTGGAAGAAAAGAATGTTTTCGTATGTTTGACGA
AGGAGAAGTATCTAAAAACTCGACTTGGCGTGAACTTGAAGCTATTCGAT
TTAGTCTTCAATCTTTTGCACCTAAAATATCAGGGAAGTCTATTTCTTGG
CAAACCGATAATATGGCAGCAAAATATATTTGCTCGAGTGGTAGTAACAA
ATCCGATTTTAACGATCTATCAAGGCTTTTCAGTATAGACTTAGAAGTGA
GCTGGATATCTAGACGTTTCAATGCCTCTGCTGACTACATTTCTAAGTTA
GTAGACACCGATGATTGGGAGATCACAGACGAATTCTTTGAACTTATAGA
TGGTTTATGGGGTCCCCTGAATATTGATAGATTTGCTAGTTATAATAACA
CTAAATGTGAGCGATTCAACTCGAAATTCTACGTTCCTGGGACGGAAGCG
GTGGATACATTTACGCAGTATTGGCGTTTTGAAAACAACCTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019826-exon-sc0000338-1491911889:232115..233084 | TCONS_00019826-exon-sc0000338-1491911889:232115..233084 | Clytia hemisphaerica | exon |
| TCONS_00019826-exon-sc0000338-1510915933:232115..233084 | TCONS_00019826-exon-sc0000338-1510915933:232115..233084 | Clytia hemisphaerica | exon |
| TCONS_00019826-exon-sc0000338-1575043694:232115..233084 | TCONS_00019826-exon-sc0000338-1575043694:232115..233084 | Clytia hemisphaerica | exon |
| TCONS_00019826-exon-sc0000338-1491911889:233210..234316 | TCONS_00019826-exon-sc0000338-1491911889:233210..234316 | Clytia hemisphaerica | exon |
| TCONS_00019826-exon-sc0000338-1510915933:233210..234316 | TCONS_00019826-exon-sc0000338-1510915933:233210..234316 | Clytia hemisphaerica | exon |
| TCONS_00019826-exon-sc0000338-1575043694:233210..234316 | TCONS_00019826-exon-sc0000338-1575043694:233210..234316 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000338 | supercontig | sc0000338:232115..234316 + |
Blast
The following BLAST results are available for this feature:
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