TCONS_00019825 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019825
Unique NameTCONS_00019825
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019825 ID=TCONS_00019825|Name=TCONS_00019825|organism=Clytia hemisphaerica|type=transcript|length=345bp
CTTCAAAGAGTCATACCAAACGAGGTAAATATCAAATCGGATCTCCATCG
ATTGagattattttatcaaaaagaaaatctcTCCACATCATCAATCAAAA
GGATCAGAGACCGTTACAAACTTATCTTAAAGAAGATTatagaacaaaaa
caaaacaccaACTTTCTGGTAGTTGACGAAAATGCTGCCAGTATAATAGA
ACATGAAAATTTGGGAGAATTCTGCCAAAATTCCTCTGGAAATTGTAAAC
CTCTGAGgGTTACCGCTGATGGAAATTGTCTTTTTAATGctgtttcaaag
aaattatGTGGCAGTGAAAAATTACACCTCGTCCTACGCGTTTTA
Run BLAST on NCBI

protein sequence of TCONS_00019825-protein

>TCONS_00019825-protein ID=TCONS_00019825-protein|Name=TCONS_00019825-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
LQRVIPNEVNIKSDLHRLRLFYQKENLSTSSIKRIRDRYKLILKKIIEQK
QNTNFLVVDENAASIIEHENLGEFCQNSSGNCKPLRVTADGNCLFNAVSK
KLCGSEKLHLVLRVL
Run BLAST on NCBI

transcript from alignment at sc0000338:130293..131225+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019825 ID=TCONS_00019825|Name=TCONS_00019825|organism=Clytia hemisphaerica|type=transcript|length=933bp|location=Sequence derived from alignment at sc0000338:130293..131225+ (Clytia hemisphaerica)
CTTCAAAGAGTCATACCAAACGAGGTAAATATCAAATCGGATCTCCATCG
ATTGagattattttatcaaaaagaaaatctcTCCACATCATCAATCAAAA
GGATCAGAGACCGTTACAAACTTATCTTAAAGAAGATTatagaacaaaaa
caaaacaccaACTTTCTGGTAGTTGACGAAAATGCTGCCAGTATAATAGA
ACATGAAAATTTGGGAGAATTCTGCCAAAATTCCTCTGGAAATTGTAAAC
CTCTGAGGTAAGCtatcatttcttttgtaaaaattcAAGCTATTGCTAGG
GATGGTCCCAGGGGGTTGTGCGTGCCAGACCTCCAAACCCTGACGcctag
agagacttttttacaaaatattttctctggtttttgaaaaaatcctacca
gtagagagacttttttacaaaagattttccaaaagtCAAAGAGACTAAAT
TTAAACCTTTCTGATATTTCCGACCCTTAAGCTTAAGGCACAAAGGCACA
TAGCACATAGACGGCCAGTTAAAGATTACCCGTGGGTAATTTGACAACCG
GAATCCGCTGGGCAATCGTTCACACGGGAACGTCCCATAGCGCacctttt
tattaaaaaaatatgtgtaTATCTTTTTACTGCATAaatcttttgagaaa
ttttttcacatcgATGATGTTCTAATAATAGATCAGAGAATCACTCCTGT
AAAAATTGTAATTGTAGAATATTTTTTACGAAAGAATGATTTTTGaatcg
ataaataattgatTTCACAACAAGCACAAAGTTTTCAACTCCTCTGCCAA
CTATTTTGGGGTAGACTTTaaataatcttttttctttttattcaggGTTA
CCGCTGATGGAAATTGTCTTTTTAATGctgtttcaaagaaattatGTGGC
AGTGAAAAATTACACCTCGTCCTACGCGTTTTA

Coding sequence (CDS) from alignment at sc0000338:130293..131225+

>TCONS_00019825 ID=TCONS_00019825|Name=TCONS_00019825|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at sc0000338:130293..131225+ (Clytia hemisphaerica)
CTTCAAAGAGTCATACCAAACGAGGTAAATATCAAATCGGATCTCCATCG
ATTGagattattttatcaaaaagaaaatctcTCCACATCATCAATCAAAA
GGATCAGAGACCGTTACAAACTTATCTTAAAGAAGATTatagaacaaaaa
caaaacaccaACTTTCTGGTAGTTGACGAAAATGCTGCCAGTATAATAGA
ACATGAAAATTTGGGAGAATTCTGCCAAAATTCCTCTGGAAATTGTAAAC
CTCTGAGgGTTACCGCTGATGGAAATTGTCTTTTTAATGctgtttcaaag
aaattatGTGGCAGTGAAAAATTACACCTCGTCCTACGCGTTTTACTTCA
AAGAGTCATACCAAACGAGGTAAATATCAAATCGGATCTCCATCGATTGa
gattattttatcaaaaagaaaatctcTCCACATCATCAATCAAAAGGATC
AGAGACCGTTACAAACTTATCTTAAAGAAGATTatagaacaaaaacaaaa
caccaACTTTCTGGTAGTTGACGAAAATGCTGCCAGTATAATAGAACATG
AAAATTTGGGAGAATTCTGCCAAAATTCCTCTGGAAATTGTAAACCTCTG
AGgGTTACCGCTGATGGAAATTGTCTTTTTAATGctgtttcaaagaaatt
atGTGGCAGTGAAAAATTACACCTCGTCCTACGCGTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011152XLOC_011152Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019825-proteinTCONS_00019825-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019825-exon-sc0000338-1491911889:130293..130549TCONS_00019825-exon-sc0000338-1491911889:130293..130549Clytia hemisphaericaexon
TCONS_00019825-exon-sc0000338-1510915933:130293..130549TCONS_00019825-exon-sc0000338-1510915933:130293..130549Clytia hemisphaericaexon
TCONS_00019825-exon-sc0000338-1575043694:130293..130549TCONS_00019825-exon-sc0000338-1575043694:130293..130549Clytia hemisphaericaexon
TCONS_00019825-exon-sc0000338-1491911889:131138..131225TCONS_00019825-exon-sc0000338-1491911889:131138..131225Clytia hemisphaericaexon
TCONS_00019825-exon-sc0000338-1510915933:131138..131225TCONS_00019825-exon-sc0000338-1510915933:131138..131225Clytia hemisphaericaexon
TCONS_00019825-exon-sc0000338-1575043694:131138..131225TCONS_00019825-exon-sc0000338-1575043694:131138..131225Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000338supercontigsc0000338:130293..131225 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0.528582	0	0	0	0.444383	0.794819	0.783321	2.40864	0.277305	1.4509	0	1.84535	0.299103	0.815783	0.280079	0	0	0.381744	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003323OTU_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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