TCONS_00019824 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019824
Unique NameTCONS_00019824
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length643

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019824 ID=TCONS_00019824|Name=TCONS_00019824|organism=Clytia hemisphaerica|type=transcript|length=643bp
AAGAACCAAATTCAAGTGGAGACTGGTAAGGTGGTTCTTCTGAAAGATTT
GAGTAACCTGGTGCAAAAGAGTCAGAACAAAGATACATATGATGATGTCA
TAAATATGCTAAGAAACCAATATGGTTGCACTGTGGAAATGAACGTGAGT
GAAAATGGAGATTTTATCGGGCTCTTCTTTCAGGACGAGGTAATGAAGAa
agattttgcttcatttcCAGAAGTCATGTGCATTGACGCCACATATAAAC
TACTGGAAATTCGATTAccagtgtatatttttttagtGGAGGATTCGATG
GGTCTCAGTGAGGTAGTTGGGGTTTCTGTTTTGGTCAATgagatgaaaga
gacaatcgtCTGGCTTATCGATACATTTAAAAAGCTGAACCCCAGTAAAG
TCAGAGTTGTAATGGCAGATAAAGATTTTAATGAACGTGACACCATTTCA
AAATTATGGTGTTGTCCAGTGCTAATTTGCCTTTTTCATTCTCTCAAAGC
TTTTAAAAGGGGCATAGCTGACCTAAAAATATCCAAAACCGATTCAGACA
CAGCCAAAGAACTGTTTGAAAAGATGTGTTATTCTTTTTCCATGGATGTT
TACAATGACACGTACAAAGATTTGAAAGCTTTGGGAAAGACGC
Run BLAST on NCBI

protein sequence of TCONS_00019824-protein

>TCONS_00019824-protein ID=TCONS_00019824-protein|Name=TCONS_00019824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
KNQIQVETGKVVLLKDLSNLVQKSQNKDTYDDVINMLRNQYGCTVEMNVS
ENGDFIGLFFQDEVMKKDFASFPEVMCIDATYKLLEIRLPVYIFLVEDSM
GLSEVVGVSVLVNEMKETIVWLIDTFKKLNPSKVRVVMADKDFNERDTIS
KLWCCPVLICLFHSLKAFKRGIADLKISKTDSDTAKELFEKMCYSFSMDV
YNDTYKDLKALGKT
Run BLAST on NCBI

transcript from alignment at sc0000338:10543..12621+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019824 ID=TCONS_00019824|Name=TCONS_00019824|organism=Clytia hemisphaerica|type=transcript|length=2079bp|location=Sequence derived from alignment at sc0000338:10543..12621+ (Clytia hemisphaerica)
AAGAACCAAATTCAAGTGGAGACTGGTAAGGTGGTTCTTCTGAAAGATTT
GAGTAACCTGGTGCAAAAGAGTCAGAACAAAGATACATATGATGATGTCA
TAAATATGCTAAGAAACCAATATGGTATGTATTTCATTAGCTTTTCAATG
AGCACAAAAATTTCCTGTATTGTATGTTTGAAATAAGCGTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGACGATGACAACCTTC
CTTCTTTTAGGTTGCACTGTGGAAATGAACGTGAGTGAAAATGGAGATTT
TATCGGGCTCTTCTTTCAGGACGAGGTAATGAAGAaagattttgcttcat
ttcCAGAAGTCATGTGCATTGACGCCACATATAAACTACTGGAAATTCGA
TTAccagtgtatatttttttagtGGAGGATTCGATGGGTCTCAGTGAGGT
AGTTGGGGTTTCTGTTTTGGTCAATgagatgaaagagacaatcgtCTGGC
TTATCGATACATTTAAAAAGCTGAACCCCAGTAAAGTCAGAGTTGTAATG
GCAGATAAAGATTTTAATGAACGTGACACCATTTCAAAATTATGGTGTTG
TCCAGTGCTAATTTGCCTTTTTCATTCTCTCAAAGCTTTTAAAAGGGGCA
TAGCTGACCTAAAAATATCCAAAACCGATTCAGACACAGCCAAAGAACTG
TTTGAAAAGATGTGTTATTCTTTTTCCATGGATGTTTACAATGACACGTA
CAAAGATTTGAAAGCTTTGGGAAAGACGC

Coding sequence (CDS) from alignment at sc0000338:10543..12621+

>TCONS_00019824 ID=TCONS_00019824|Name=TCONS_00019824|organism=Clytia hemisphaerica|type=CDS|length=1284bp|location=Sequence derived from alignment at sc0000338:10543..12621+ (Clytia hemisphaerica)
AAGAACCAAATTCAAGTGGAGACTGGTAAGGTGGTTCTTCTGAAAGATTT
GAGTAACCTGGTGCAAAAGAGTCAGAACAAAGATACATATGATGATGTCA
TAAATATGCTAAGAAACCAATATGGTTGCACTGTGGAAATGAACGTGAGT
GAAAATGGAGATTTTATCGGGCTCTTCTTTCAGGACGAGGTAATGAAGAa
agattttgcttcatttcCAGAAGTCATGTGCATTGACGCCACATATAAAC
TACTGGAAATTCGATTAccagtgtatatttttttagtGGAGGATTCGATG
GGTCTCAGTGAGGTAGTTGGGGTTTCTGTTTTGGTCAATgagatgaaaga
gacaatcgtCTGGCTTATCGATACATTTAAAAAGCTGAACCCCAGTAAAG
TCAGAGTTGTAATGGCAGATAAAGATTTTAATGAACGTGACACCATTTCA
AAATTATGGTGTTGTCCAGTGCTAATTTGCCTTTTTCATTCTCTCAAAGC
TTTTAAAAGGGGCATAGCTGACCTAAAAATATCCAAAACCGATTCAGACA
CAGCCAAAGAACTGTTTGAAAAGATGTGTTATTCTTTTTCCATGGATGTT
TACAATGACACGTACAAAGATTTGAAAGCTTTGGGAAAGACGAAGAACCA
AATTCAAGTGGAGACTGGTAAGGTGGTTCTTCTGAAAGATTTGAGTAACC
TGGTGCAAAAGAGTCAGAACAAAGATACATATGATGATGTCATAAATATG
CTAAGAAACCAATATGGTTGCACTGTGGAAATGAACGTGAGTGAAAATGG
AGATTTTATCGGGCTCTTCTTTCAGGACGAGGTAATGAAGAaagattttg
cttcatttcCAGAAGTCATGTGCATTGACGCCACATATAAACTACTGGAA
ATTCGATTAccagtgtatatttttttagtGGAGGATTCGATGGGTCTCAG
TGAGGTAGTTGGGGTTTCTGTTTTGGTCAATgagatgaaagagacaatcg
tCTGGCTTATCGATACATTTAAAAAGCTGAACCCCAGTAAAGTCAGAGTT
GTAATGGCAGATAAAGATTTTAATGAACGTGACACCATTTCAAAATTATG
GTGTTGTCCAGTGCTAATTTGCCTTTTTCATTCTCTCAAAGCTTTTAAAA
GGGGCATAGCTGACCTAAAAATATCCAAAACCGATTCAGACACAGCCAAA
GAACTGTTTGAAAAGATGTGTTATTCTTTTTCCATGGATGTTTACAATGA
CACGTACAAAGATTTGAAAGCTTTGGGAAAGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011151XLOC_011151Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019824-proteinTCONS_00019824-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019824-exon-sc0000338-1491911889:10543..10666TCONS_00019824-exon-sc0000338-1491911889:10543..10666Clytia hemisphaericaexon
TCONS_00019824-exon-sc0000338-1510915933:10543..10666TCONS_00019824-exon-sc0000338-1510915933:10543..10666Clytia hemisphaericaexon
TCONS_00019824-exon-sc0000338-1575043694:10543..10666TCONS_00019824-exon-sc0000338-1575043694:10543..10666Clytia hemisphaericaexon
TCONS_00019824-exon-sc0000338-1491911889:12103..12621TCONS_00019824-exon-sc0000338-1491911889:12103..12621Clytia hemisphaericaexon
TCONS_00019824-exon-sc0000338-1510915933:12103..12621TCONS_00019824-exon-sc0000338-1510915933:12103..12621Clytia hemisphaericaexon
TCONS_00019824-exon-sc0000338-1575043694:12103..12621TCONS_00019824-exon-sc0000338-1575043694:12103..12621Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000338supercontigsc0000338:10543..12621 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	6.39839	5.57776	5.45451	7.23485	2.60091	1.79004	2.57104	2.55468	2.72892	3.66078	0	0	0	0.0628986	0	0	0.0790366	0	0	0.124519	1.06674	4.96378	0.11209	0	0.454963	0.184882
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018289MULE_transposase_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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